This file is indexed.

/usr/share/perl5/Globus/GRAM/StdioMerger.pm is in globus-gram-job-manager-scripts 6.7-3.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
package Globus::GRAM::StdioMerger;

use strict;
use Globus::Core::Paths;
use File::Copy;

sub SEEK_SET {0;} # ugly non-portable hack to avoid "use Fcntl"

sub new
{
    my $proto = shift;
    my $class = ref($proto) || $proto;
    my $dir = shift;
    my $stdout = shift;
    my $stderr = shift;
    my $self  = {};

    $self->{STDOUT_FILES} = [];
    $self->{STDERR_FILES} = [];
    $self->{STDOUT} = $stdout;
    $self->{STDERR} = $stderr;
    $self->{DIR} = $dir;

    $self->{MERGE_FILENAME} = "$dir/stdio_merge_metadata";

    bless $self, $class;

    if( -s $self->{MERGE_FILENAME})
    {
	$self->load_state();
    }

    return $self;
}

sub add_file
{
    my $self = shift;
    my $type = shift;
    my $array;
    my $index;
    my $format = "\%s/std\%s\%03d";
    my $new_name;

    if($type eq 'out')
    {
	$array = $self->{STDOUT_FILES};
    }
    else
    {
	$array = $self->{STDERR_FILES};
    }
    $index = scalar(@{$array});

    $new_name = sprintf($format, $self->{DIR}, $type, $index);

    if($new_name eq '')
    {
	return undef;
    }

    push(@{$array}, [ "$type", $new_name, 0 ]);

    $self->store_state();

    return $new_name;
}

sub poll
{
    my $self = shift;
    my $final = shift;

    local(*FH);
    open(FH, '>>' . $self->{STDERR});

    $self->poll_list('STDOUT', $final);
    $self->poll_list('STDERR', $final);

    $self->store_state();
    close(FH);
}

sub poll_list
{
    my $self = shift;
    my $which = shift;
    my $final = shift;

    local(*OUT);
    open(OUT, '>>' . $self->{$which});
    select((select(OUT),$|=1)[$[]); # autoflush=1

    foreach my $record (@{$self->{$which . '_FILES'}})
    {
        my @stat = CORE::stat($record->[1]);
        next if @stat == 0;

        local(*FH);
        open(FH, '<'. $record->[1]);

	# We want to merge up to the last newline ... but if
	# we're in the DONE state, then we want to poll until
	# EOF
	do
	{
	    if($stat[7] > $record->[2])
	    {
		my($buffer, $buffersize, $writable);

		# file has grown... merge in new data
		$buffersize = $stat[7] - $record->[2];
		$buffersize = 4096 if $buffersize > 4096;

                seek(FH, $record->[2], SEEK_SET);
                read(FH, $buffer, $buffersize);

		$writable = $buffer;

		# We want to do line buffering, so we'll just 
		# strip off all data after the last newline
		if(! $final)
		{
		    my @writable;

		    @writable = split(//, $writable);
		    while(@writable)
		    {
			$_ = pop(@writable);
			if($_ eq "\n")
			{
			    push(@writable, "\n");
			    last;
			}
		    }
		    $writable = join('', @writable);
		}
		$record->[2] += length($writable);

		print OUT $writable;
	    }
	}
	while($final && ($record->[2] < $stat[7]));
        close(FH);
    }
    close(OUT);
}

sub store_state
{
    my $self = shift;
    my $tmp_filename = $self->{MERGE_FILENAME} . '.tmp';
    my $format = '%s "%s" %s' . "\n";

    local(*TMP);
    open(TMP, '>' . $tmp_filename);

    foreach(@{$self->{STDOUT_FILES}}, @{$self->{STDERR_FILES}})
    {
	printf TMP $format, $_->[0], $_->[1], $_->[2];
    }
    close(TMP);

    rename($tmp_filename, $self->{MERGE_FILENAME});

    return 0;
}

sub load_state
{
    my $self = shift;

    local(*IN);
    open(IN, '<' . $self->{MERGE_FILENAME});

    while(<IN>)
    {
	m/^(out|err)\s+"([^"]+)"\s+([0-9]+)$/ or next;
	my ($type, $local_filename, $offset) = ($1, $2, $3);

	if($type eq 'out')
	{
	    push(@{$self->{STDOUT_FILES}}, [$type, $local_filename, $offset]);
	}
	elsif($type eq 'err')
	{
	    push(@{$self->{STDERR_FILES}}, [$type, $local_filename, $offset]);
	}
    }
    close IN;

    return 0;
}

sub pipe_out_cmd
{
    my @result;
    local(*READ);

    my $pid = open( READ, "-|" );
    return undef unless defined $pid;

    if ( $pid )
    {
        # parent
        chomp(@result = <READ>);
        close(READ);
    } else {
        # child
        open( STDERR, '>>/dev/null' );
        select(STDERR); $|=1;
        select(STDOUT); $|=1;
        if (!  exec { $_[0] } @_ )
        {
            exit(127);
        }
    }
    wantarray ? @result : $result[0];
}

1;