/usr/share/perl5/Genome/Model/Tools/Music/Bmr.pm is in libgenome-model-tools-music-perl 0.04-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 | package Genome::Model::Tools::Music::Bmr;
use warnings;
use strict;
use Genome;
our $VERSION = $Genome::Model::Tools::Music::VERSION;
class Genome::Model::Tools::Music::Bmr {
#is => ['Command::Tree','Genome::Model::Tools::Music::Base'],
is => ['Command::Tree'],
doc => "Calculate gene coverages and background mutation rates."
};
sub _doc_copyright_years {
(2010,2011);
}
sub _doc_license {
my $self = shift;
my (@y) = $self->_doc_copyright_years;
return <<EOS
Copyright (C) $y[0]-$y[1] Washington University in St. Louis.
It is released under the Lesser GNU Public License (LGPL) version 3. See the
associated LICENSE file in this distribution.
EOS
}
sub _doc_authors {
return " Cyriac Kandoth, Ph.D.";
}
=cut
sub _doc_credits {
# used to compose man pages
# (return a list of strings)
return ('','None at this time.');
}
=cut
sub _doc_see_also {
return <<EOS
B<genome-music-bmr-calc-covg>(1),
B<genome-music-bmr-calc-bmr>(1),
B<genome-music>(1),
B<genome>(1)
EOS
}
sub _doc_manual_body {
return shift->help_detail;
}
sub help_detail {
return "These tools are part of the MuSiC suite.\n";
}
1;
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