/usr/bin/genome is in libgenome-perl 0.06-1.
This file is owned by root:root, with mode 0o755.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 | #!/usr/bin/env perl
use strict;
use warnings;
BEGIN {
# This allows the gmt command to self-serve as a tab completer for the bash shell.
# When "gmt" is run by bash as a tab completer, the code below will service the
# tab-completion request and then exit before doing any real work.
# The code is in an eval to prevent problems on systems which do not have Getopt::Complete
# installed. The code is in a BEGIN block to ensure it still runs before anything else.
if ($ENV{COMP_LINE}) {
eval "use Getopt::Complete::Cache class => 'Genome::Model::Tools', above => 1;";
exit if ($@);
}
};
use above 'Genome';
use Genome::Model::Tools;
Genome::Model::Tools->execute_with_shell_params_and_exit();
=pod
=head1 NAME
genome - bioinformatics tools for genomics
=head1 SYNOPSIS
# get a top-level list
genome
# see the MuSiC tools
genome music
# run the MuSiC smg-test tool (for example)
genome music smg-test
=head1 DESCRIPTION
The B<genome> command gives command-line access to any of the genome modeling tools
which are installed on the current system.
Each installed tool group is a sub-command.
Just type B<genome> and press <ENTER> for a the top-level list and drill down.
=head1 DEVELOPMENT
Installing any new Perl module with a name starting with Genome::Model::Tools will add to the tree.
=head1 AUTHORS
This software is developed by the analysis and engineering teams at
The Genome Center at Washington Univiersity in St. Louis, with funding from
the National Human Genome Research Institute. Richard K. Wilson, P.I.
Scott Abbott
Travis Abbott
Edward Belter
Paul Bender
Anthony Brummett
Todd C. Carter
Matthew Callaway
C.J. Carey
Lynn Carmichael
Ken Chen
Eric Clark
Kevin Crouse
Indraniel Das
Nathan Dees
Eric deMello
Brian Derickson
Alice Diec
David Dooling
Feiyu Du
Adam Dukes
James Eldred
Xian Fan
Ian Ferguson
Chris Harris
Amy Hawkins
Todd Hepler
Xin Hong
Shunfang Hou
Jasreet Hundal
Erik Hvatum
Mark Johnson
Krisha-Latha Kanchi
Cyriac Kandoth
Phil Kimmey
Michael Kiwala
Daniel Koboldt
Karthik Kota
Kim Kyung
David Larson
Sai Lek
Shawn Leonard
Shin Leong
Ling Lin
Justin Lolofie
Robert Long
Charles Lu
John Martin
Josh McMichael
Rick Meyer
Thomas Mooney
William Nash
Nathan Nutter
Ben Oberkfell
John Osborne
Josh Peck
Jerome Peirick
Craig Pohl
Ryan Richt
Noorus Sahar Abubucker
Gabriel Sanderson
William Schierding
Jon Schindler
William Schroeder
Christopher Schuster
Xiaoqi Shi
Scott Smith
Sasi Suruliraj
Kenneth Swanson
Jason Walker
John Wallis
Jim Weible
Mike Wendl
Todd Wylie
=head1 LICENSE
Copyright (C) 2007-2011 Washington University in St. Louis.
It is released under the Lesser GNU Public License (LGPL) version 3. See the
associated LICENSE file in this distribution.
=head1 BUGS
For defects with any software in the genome namespace,
contact genome-dev ~at~ genome.wustl.edu.
=cut
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