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<div class="contentContainer"><a href="#_A_">A</a> <a href="#_C_">C</a> <a href="#_D_">D</a> <a href="#_E_">E</a> <a href="#_G_">G</a> <a href="#_H_">H</a> <a href="#_M_">M</a> <a href="#_O_">O</a> <a href="#_S_">S</a> <a href="#_T_">T</a> <a href="#_W_">W</a> <a name="_A_">
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<h2 class="title">A</h2>
<dl>
<dt><a href="./ch/usi/inf/sape/hac/agglomeration/AgglomerationMethod.html" title="interface in ch.usi.inf.sape.hac.agglomeration"><span class="strong">AgglomerationMethod</span></a> - Interface in <a href="./ch/usi/inf/sape/hac/agglomeration/package-summary.html">ch.usi.inf.sape.hac.agglomeration</a></dt>
<dd>
<div class="block">An AgglomerationMethod represents the Lance-Williams dissimilarity update formula
used for hierarchical agglomerative clustering.</div>
</dd>
<dt><a href="./ch/usi/inf/sape/hac/agglomeration/AverageLinkage.html" title="class in ch.usi.inf.sape.hac.agglomeration"><span class="strong">AverageLinkage</span></a> - Class in <a href="./ch/usi/inf/sape/hac/agglomeration/package-summary.html">ch.usi.inf.sape.hac.agglomeration</a></dt>
<dd>
<div class="block">The "average", "group average", "unweighted average", or
"Unweighted Pair Group Method using Arithmetic averages (UPGMA)",
is a graph-based approach.</div>
</dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/agglomeration/AverageLinkage.html#AverageLinkage()">AverageLinkage()</a></span> - Constructor for class ch.usi.inf.sape.hac.agglomeration.<a href="./ch/usi/inf/sape/hac/agglomeration/AverageLinkage.html" title="class in ch.usi.inf.sape.hac.agglomeration">AverageLinkage</a></dt>
<dd> </dd>
</dl>
<a name="_C_">
<!-- -->
</a>
<h2 class="title">C</h2>
<dl>
<dt><a href="./ch/usi/inf/sape/hac/agglomeration/CentroidLinkage.html" title="class in ch.usi.inf.sape.hac.agglomeration"><span class="strong">CentroidLinkage</span></a> - Class in <a href="./ch/usi/inf/sape/hac/agglomeration/package-summary.html">ch.usi.inf.sape.hac.agglomeration</a></dt>
<dd>
<div class="block">The "centroid" or "Unweighted Pair-Group Method using Centroids (UPGMC)"
method is a geometric approach that links the centroids of clusters.</div>
</dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/agglomeration/CentroidLinkage.html#CentroidLinkage()">CentroidLinkage()</a></span> - Constructor for class ch.usi.inf.sape.hac.agglomeration.<a href="./ch/usi/inf/sape/hac/agglomeration/CentroidLinkage.html" title="class in ch.usi.inf.sape.hac.agglomeration">CentroidLinkage</a></dt>
<dd> </dd>
<dt><a href="./ch/usi/inf/sape/hac/package-summary.html">ch.usi.inf.sape.hac</a> - package ch.usi.inf.sape.hac</dt>
<dd> </dd>
<dt><a href="./ch/usi/inf/sape/hac/agglomeration/package-summary.html">ch.usi.inf.sape.hac.agglomeration</a> - package ch.usi.inf.sape.hac.agglomeration</dt>
<dd> </dd>
<dt><a href="./ch/usi/inf/sape/hac/dendrogram/package-summary.html">ch.usi.inf.sape.hac.dendrogram</a> - package ch.usi.inf.sape.hac.dendrogram</dt>
<dd> </dd>
<dt><a href="./ch/usi/inf/sape/hac/experiment/package-summary.html">ch.usi.inf.sape.hac.experiment</a> - package ch.usi.inf.sape.hac.experiment</dt>
<dd> </dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/HierarchicalAgglomerativeClusterer.html#cluster(ch.usi.inf.sape.hac.ClusteringBuilder)">cluster(ClusteringBuilder)</a></span> - Method in class ch.usi.inf.sape.hac.<a href="./ch/usi/inf/sape/hac/HierarchicalAgglomerativeClusterer.html" title="class in ch.usi.inf.sape.hac">HierarchicalAgglomerativeClusterer</a></dt>
<dd> </dd>
<dt><a href="./ch/usi/inf/sape/hac/ClusteringBuilder.html" title="interface in ch.usi.inf.sape.hac"><span class="strong">ClusteringBuilder</span></a> - Interface in <a href="./ch/usi/inf/sape/hac/package-summary.html">ch.usi.inf.sape.hac</a></dt>
<dd>
<div class="block">HierarchicalAgglomerativeClusterer.cluster() takes a ClusteringBuilder as its argument,
calling its merge() method whenever it merges two clusters.</div>
</dd>
<dt><a href="./ch/usi/inf/sape/hac/ClusteringBuilderMultiplexer.html" title="class in ch.usi.inf.sape.hac"><span class="strong">ClusteringBuilderMultiplexer</span></a> - Class in <a href="./ch/usi/inf/sape/hac/package-summary.html">ch.usi.inf.sape.hac</a></dt>
<dd>
<div class="block">A ClusteringBuilderMultiplexer is a ClusteringBuilder that forwards calls to two other ClusteringBuilders.</div>
</dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/ClusteringBuilderMultiplexer.html#ClusteringBuilderMultiplexer(ch.usi.inf.sape.hac.ClusteringBuilder, ch.usi.inf.sape.hac.ClusteringBuilder)">ClusteringBuilderMultiplexer(ClusteringBuilder, ClusteringBuilder)</a></span> - Constructor for class ch.usi.inf.sape.hac.<a href="./ch/usi/inf/sape/hac/ClusteringBuilderMultiplexer.html" title="class in ch.usi.inf.sape.hac">ClusteringBuilderMultiplexer</a></dt>
<dd> </dd>
<dt><a href="./ch/usi/inf/sape/hac/ClusteringMatrixBuilder.html" title="class in ch.usi.inf.sape.hac"><span class="strong">ClusteringMatrixBuilder</span></a> - Class in <a href="./ch/usi/inf/sape/hac/package-summary.html">ch.usi.inf.sape.hac</a></dt>
<dd>
<div class="block">A ClusteringMatrixBuilder builds a matrix in which
each row represents a step in the clustering
and each column represents an observation or cluster.</div>
</dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/ClusteringMatrixBuilder.html#ClusteringMatrixBuilder(int)">ClusteringMatrixBuilder(int)</a></span> - Constructor for class ch.usi.inf.sape.hac.<a href="./ch/usi/inf/sape/hac/ClusteringMatrixBuilder.html" title="class in ch.usi.inf.sape.hac">ClusteringMatrixBuilder</a></dt>
<dd> </dd>
<dt><a href="./ch/usi/inf/sape/hac/agglomeration/CompleteLinkage.html" title="class in ch.usi.inf.sape.hac.agglomeration"><span class="strong">CompleteLinkage</span></a> - Class in <a href="./ch/usi/inf/sape/hac/agglomeration/package-summary.html">ch.usi.inf.sape.hac.agglomeration</a></dt>
<dd>
<div class="block">The "complete", "maximum", "clique",
"furthest neighbor", or "furthest distance" method is a graph-based approach.</div>
</dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/agglomeration/CompleteLinkage.html#CompleteLinkage()">CompleteLinkage()</a></span> - Constructor for class ch.usi.inf.sape.hac.agglomeration.<a href="./ch/usi/inf/sape/hac/agglomeration/CompleteLinkage.html" title="class in ch.usi.inf.sape.hac.agglomeration">CompleteLinkage</a></dt>
<dd> </dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/agglomeration/AgglomerationMethod.html#computeDissimilarity(double, double, double, int, int, int)">computeDissimilarity(double, double, double, int, int, int)</a></span> - Method in interface ch.usi.inf.sape.hac.agglomeration.<a href="./ch/usi/inf/sape/hac/agglomeration/AgglomerationMethod.html" title="interface in ch.usi.inf.sape.hac.agglomeration">AgglomerationMethod</a></dt>
<dd>
<div class="block">Compute the dissimilarity between the
newly formed cluster (i,j) and the existing cluster k.</div>
</dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/agglomeration/AverageLinkage.html#computeDissimilarity(double, double, double, int, int, int)">computeDissimilarity(double, double, double, int, int, int)</a></span> - Method in class ch.usi.inf.sape.hac.agglomeration.<a href="./ch/usi/inf/sape/hac/agglomeration/AverageLinkage.html" title="class in ch.usi.inf.sape.hac.agglomeration">AverageLinkage</a></dt>
<dd> </dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/agglomeration/CentroidLinkage.html#computeDissimilarity(double, double, double, int, int, int)">computeDissimilarity(double, double, double, int, int, int)</a></span> - Method in class ch.usi.inf.sape.hac.agglomeration.<a href="./ch/usi/inf/sape/hac/agglomeration/CentroidLinkage.html" title="class in ch.usi.inf.sape.hac.agglomeration">CentroidLinkage</a></dt>
<dd> </dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/agglomeration/CompleteLinkage.html#computeDissimilarity(double, double, double, int, int, int)">computeDissimilarity(double, double, double, int, int, int)</a></span> - Method in class ch.usi.inf.sape.hac.agglomeration.<a href="./ch/usi/inf/sape/hac/agglomeration/CompleteLinkage.html" title="class in ch.usi.inf.sape.hac.agglomeration">CompleteLinkage</a></dt>
<dd> </dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/agglomeration/MedianLinkage.html#computeDissimilarity(double, double, double, int, int, int)">computeDissimilarity(double, double, double, int, int, int)</a></span> - Method in class ch.usi.inf.sape.hac.agglomeration.<a href="./ch/usi/inf/sape/hac/agglomeration/MedianLinkage.html" title="class in ch.usi.inf.sape.hac.agglomeration">MedianLinkage</a></dt>
<dd> </dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/agglomeration/SingleLinkage.html#computeDissimilarity(double, double, double, int, int, int)">computeDissimilarity(double, double, double, int, int, int)</a></span> - Method in class ch.usi.inf.sape.hac.agglomeration.<a href="./ch/usi/inf/sape/hac/agglomeration/SingleLinkage.html" title="class in ch.usi.inf.sape.hac.agglomeration">SingleLinkage</a></dt>
<dd> </dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/agglomeration/WardLinkage.html#computeDissimilarity(double, double, double, int, int, int)">computeDissimilarity(double, double, double, int, int, int)</a></span> - Method in class ch.usi.inf.sape.hac.agglomeration.<a href="./ch/usi/inf/sape/hac/agglomeration/WardLinkage.html" title="class in ch.usi.inf.sape.hac.agglomeration">WardLinkage</a></dt>
<dd> </dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/agglomeration/WeightedAverageLinkage.html#computeDissimilarity(double, double, double, int, int, int)">computeDissimilarity(double, double, double, int, int, int)</a></span> - Method in class ch.usi.inf.sape.hac.agglomeration.<a href="./ch/usi/inf/sape/hac/agglomeration/WeightedAverageLinkage.html" title="class in ch.usi.inf.sape.hac.agglomeration">WeightedAverageLinkage</a></dt>
<dd> </dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/experiment/DissimilarityMeasure.html#computeDissimilarity(ch.usi.inf.sape.hac.experiment.Experiment, int, int)">computeDissimilarity(Experiment, int, int)</a></span> - Method in interface ch.usi.inf.sape.hac.experiment.<a href="./ch/usi/inf/sape/hac/experiment/DissimilarityMeasure.html" title="interface in ch.usi.inf.sape.hac.experiment">DissimilarityMeasure</a></dt>
<dd> </dd>
</dl>
<a name="_D_">
<!-- -->
</a>
<h2 class="title">D</h2>
<dl>
<dt><a href="./ch/usi/inf/sape/hac/dendrogram/Dendrogram.html" title="class in ch.usi.inf.sape.hac.dendrogram"><span class="strong">Dendrogram</span></a> - Class in <a href="./ch/usi/inf/sape/hac/dendrogram/package-summary.html">ch.usi.inf.sape.hac.dendrogram</a></dt>
<dd>
<div class="block">A Dendrogram represents the results of hierachical agglomerative clustering.</div>
</dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/dendrogram/Dendrogram.html#Dendrogram(ch.usi.inf.sape.hac.dendrogram.DendrogramNode)">Dendrogram(DendrogramNode)</a></span> - Constructor for class ch.usi.inf.sape.hac.dendrogram.<a href="./ch/usi/inf/sape/hac/dendrogram/Dendrogram.html" title="class in ch.usi.inf.sape.hac.dendrogram">Dendrogram</a></dt>
<dd> </dd>
<dt><a href="./ch/usi/inf/sape/hac/dendrogram/DendrogramBuilder.html" title="class in ch.usi.inf.sape.hac.dendrogram"><span class="strong">DendrogramBuilder</span></a> - Class in <a href="./ch/usi/inf/sape/hac/dendrogram/package-summary.html">ch.usi.inf.sape.hac.dendrogram</a></dt>
<dd>
<div class="block">A DendrogramBuilder creates a Dendrogram consisting of ObservationNodes and
MergeNodes.</div>
</dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/dendrogram/DendrogramBuilder.html#DendrogramBuilder(int)">DendrogramBuilder(int)</a></span> - Constructor for class ch.usi.inf.sape.hac.dendrogram.<a href="./ch/usi/inf/sape/hac/dendrogram/DendrogramBuilder.html" title="class in ch.usi.inf.sape.hac.dendrogram">DendrogramBuilder</a></dt>
<dd> </dd>
<dt><a href="./ch/usi/inf/sape/hac/dendrogram/DendrogramNode.html" title="interface in ch.usi.inf.sape.hac.dendrogram"><span class="strong">DendrogramNode</span></a> - Interface in <a href="./ch/usi/inf/sape/hac/dendrogram/package-summary.html">ch.usi.inf.sape.hac.dendrogram</a></dt>
<dd>
<div class="block">A DendrogramNode is a node in a Dendrogram.</div>
</dd>
<dt><a href="./ch/usi/inf/sape/hac/experiment/DissimilarityMeasure.html" title="interface in ch.usi.inf.sape.hac.experiment"><span class="strong">DissimilarityMeasure</span></a> - Interface in <a href="./ch/usi/inf/sape/hac/experiment/package-summary.html">ch.usi.inf.sape.hac.experiment</a></dt>
<dd>
<div class="block">Computes the dissimilarity between two observations in an experiment.</div>
</dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/dendrogram/Dendrogram.html#dump()">dump()</a></span> - Method in class ch.usi.inf.sape.hac.dendrogram.<a href="./ch/usi/inf/sape/hac/dendrogram/Dendrogram.html" title="class in ch.usi.inf.sape.hac.dendrogram">Dendrogram</a></dt>
<dd> </dd>
</dl>
<a name="_E_">
<!-- -->
</a>
<h2 class="title">E</h2>
<dl>
<dt><a href="./ch/usi/inf/sape/hac/experiment/Experiment.html" title="interface in ch.usi.inf.sape.hac.experiment"><span class="strong">Experiment</span></a> - Interface in <a href="./ch/usi/inf/sape/hac/experiment/package-summary.html">ch.usi.inf.sape.hac.experiment</a></dt>
<dd>
<div class="block">An experiment consists of a number of observations.</div>
</dd>
</dl>
<a name="_G_">
<!-- -->
</a>
<h2 class="title">G</h2>
<dl>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/HierarchicalAgglomerativeClusterer.html#getAgglomerationMethod()">getAgglomerationMethod()</a></span> - Method in class ch.usi.inf.sape.hac.<a href="./ch/usi/inf/sape/hac/HierarchicalAgglomerativeClusterer.html" title="class in ch.usi.inf.sape.hac">HierarchicalAgglomerativeClusterer</a></dt>
<dd> </dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/ClusteringMatrixBuilder.html#getClustering()">getClustering()</a></span> - Method in class ch.usi.inf.sape.hac.<a href="./ch/usi/inf/sape/hac/ClusteringMatrixBuilder.html" title="class in ch.usi.inf.sape.hac">ClusteringMatrixBuilder</a></dt>
<dd> </dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/dendrogram/DendrogramBuilder.html#getDendrogram()">getDendrogram()</a></span> - Method in class ch.usi.inf.sape.hac.dendrogram.<a href="./ch/usi/inf/sape/hac/dendrogram/DendrogramBuilder.html" title="class in ch.usi.inf.sape.hac.dendrogram">DendrogramBuilder</a></dt>
<dd> </dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/dendrogram/MergeNode.html#getDissimilarity()">getDissimilarity()</a></span> - Method in class ch.usi.inf.sape.hac.dendrogram.<a href="./ch/usi/inf/sape/hac/dendrogram/MergeNode.html" title="class in ch.usi.inf.sape.hac.dendrogram">MergeNode</a></dt>
<dd> </dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/HierarchicalAgglomerativeClusterer.html#getDissimilarityMeasure()">getDissimilarityMeasure()</a></span> - Method in class ch.usi.inf.sape.hac.<a href="./ch/usi/inf/sape/hac/HierarchicalAgglomerativeClusterer.html" title="class in ch.usi.inf.sape.hac">HierarchicalAgglomerativeClusterer</a></dt>
<dd> </dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/HierarchicalAgglomerativeClusterer.html#getExperiment()">getExperiment()</a></span> - Method in class ch.usi.inf.sape.hac.<a href="./ch/usi/inf/sape/hac/HierarchicalAgglomerativeClusterer.html" title="class in ch.usi.inf.sape.hac">HierarchicalAgglomerativeClusterer</a></dt>
<dd> </dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/dendrogram/DendrogramNode.html#getLeft()">getLeft()</a></span> - Method in interface ch.usi.inf.sape.hac.dendrogram.<a href="./ch/usi/inf/sape/hac/dendrogram/DendrogramNode.html" title="interface in ch.usi.inf.sape.hac.dendrogram">DendrogramNode</a></dt>
<dd> </dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/dendrogram/MergeNode.html#getLeft()">getLeft()</a></span> - Method in class ch.usi.inf.sape.hac.dendrogram.<a href="./ch/usi/inf/sape/hac/dendrogram/MergeNode.html" title="class in ch.usi.inf.sape.hac.dendrogram">MergeNode</a></dt>
<dd> </dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/dendrogram/ObservationNode.html#getLeft()">getLeft()</a></span> - Method in class ch.usi.inf.sape.hac.dendrogram.<a href="./ch/usi/inf/sape/hac/dendrogram/ObservationNode.html" title="class in ch.usi.inf.sape.hac.dendrogram">ObservationNode</a></dt>
<dd> </dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/experiment/Experiment.html#getNumberOfObservations()">getNumberOfObservations()</a></span> - Method in interface ch.usi.inf.sape.hac.experiment.<a href="./ch/usi/inf/sape/hac/experiment/Experiment.html" title="interface in ch.usi.inf.sape.hac.experiment">Experiment</a></dt>
<dd> </dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/dendrogram/ObservationNode.html#getObservation()">getObservation()</a></span> - Method in class ch.usi.inf.sape.hac.dendrogram.<a href="./ch/usi/inf/sape/hac/dendrogram/ObservationNode.html" title="class in ch.usi.inf.sape.hac.dendrogram">ObservationNode</a></dt>
<dd> </dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/dendrogram/DendrogramNode.html#getObservationCount()">getObservationCount()</a></span> - Method in interface ch.usi.inf.sape.hac.dendrogram.<a href="./ch/usi/inf/sape/hac/dendrogram/DendrogramNode.html" title="interface in ch.usi.inf.sape.hac.dendrogram">DendrogramNode</a></dt>
<dd> </dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/dendrogram/MergeNode.html#getObservationCount()">getObservationCount()</a></span> - Method in class ch.usi.inf.sape.hac.dendrogram.<a href="./ch/usi/inf/sape/hac/dendrogram/MergeNode.html" title="class in ch.usi.inf.sape.hac.dendrogram">MergeNode</a></dt>
<dd> </dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/dendrogram/ObservationNode.html#getObservationCount()">getObservationCount()</a></span> - Method in class ch.usi.inf.sape.hac.dendrogram.<a href="./ch/usi/inf/sape/hac/dendrogram/ObservationNode.html" title="class in ch.usi.inf.sape.hac.dendrogram">ObservationNode</a></dt>
<dd> </dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/dendrogram/DendrogramNode.html#getRight()">getRight()</a></span> - Method in interface ch.usi.inf.sape.hac.dendrogram.<a href="./ch/usi/inf/sape/hac/dendrogram/DendrogramNode.html" title="interface in ch.usi.inf.sape.hac.dendrogram">DendrogramNode</a></dt>
<dd> </dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/dendrogram/MergeNode.html#getRight()">getRight()</a></span> - Method in class ch.usi.inf.sape.hac.dendrogram.<a href="./ch/usi/inf/sape/hac/dendrogram/MergeNode.html" title="class in ch.usi.inf.sape.hac.dendrogram">MergeNode</a></dt>
<dd> </dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/dendrogram/ObservationNode.html#getRight()">getRight()</a></span> - Method in class ch.usi.inf.sape.hac.dendrogram.<a href="./ch/usi/inf/sape/hac/dendrogram/ObservationNode.html" title="class in ch.usi.inf.sape.hac.dendrogram">ObservationNode</a></dt>
<dd> </dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/dendrogram/Dendrogram.html#getRoot()">getRoot()</a></span> - Method in class ch.usi.inf.sape.hac.dendrogram.<a href="./ch/usi/inf/sape/hac/dendrogram/Dendrogram.html" title="class in ch.usi.inf.sape.hac.dendrogram">Dendrogram</a></dt>
<dd> </dd>
</dl>
<a name="_H_">
<!-- -->
</a>
<h2 class="title">H</h2>
<dl>
<dt><a href="./ch/usi/inf/sape/hac/HierarchicalAgglomerativeClusterer.html" title="class in ch.usi.inf.sape.hac"><span class="strong">HierarchicalAgglomerativeClusterer</span></a> - Class in <a href="./ch/usi/inf/sape/hac/package-summary.html">ch.usi.inf.sape.hac</a></dt>
<dd>
<div class="block">The HierarchicalAgglomerativeClusterer creates a hierarchical agglomerative clustering.</div>
</dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/HierarchicalAgglomerativeClusterer.html#HierarchicalAgglomerativeClusterer(ch.usi.inf.sape.hac.experiment.Experiment, ch.usi.inf.sape.hac.experiment.DissimilarityMeasure, ch.usi.inf.sape.hac.agglomeration.AgglomerationMethod)">HierarchicalAgglomerativeClusterer(Experiment, DissimilarityMeasure, AgglomerationMethod)</a></span> - Constructor for class ch.usi.inf.sape.hac.<a href="./ch/usi/inf/sape/hac/HierarchicalAgglomerativeClusterer.html" title="class in ch.usi.inf.sape.hac">HierarchicalAgglomerativeClusterer</a></dt>
<dd> </dd>
</dl>
<a name="_M_">
<!-- -->
</a>
<h2 class="title">M</h2>
<dl>
<dt><a href="./ch/usi/inf/sape/hac/agglomeration/MedianLinkage.html" title="class in ch.usi.inf.sape.hac.agglomeration"><span class="strong">MedianLinkage</span></a> - Class in <a href="./ch/usi/inf/sape/hac/agglomeration/package-summary.html">ch.usi.inf.sape.hac.agglomeration</a></dt>
<dd>
<div class="block">The "median", "weighted centroid", "weighted center of mass distance", "Gower",
or "Weighted Pair-Group Method using Centroids (WPGMC)" method is a geometric approach.</div>
</dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/agglomeration/MedianLinkage.html#MedianLinkage()">MedianLinkage()</a></span> - Constructor for class ch.usi.inf.sape.hac.agglomeration.<a href="./ch/usi/inf/sape/hac/agglomeration/MedianLinkage.html" title="class in ch.usi.inf.sape.hac.agglomeration">MedianLinkage</a></dt>
<dd> </dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/ClusteringBuilder.html#merge(int, int, double)">merge(int, int, double)</a></span> - Method in interface ch.usi.inf.sape.hac.<a href="./ch/usi/inf/sape/hac/ClusteringBuilder.html" title="interface in ch.usi.inf.sape.hac">ClusteringBuilder</a></dt>
<dd>
<div class="block">Merge two clusters.</div>
</dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/ClusteringBuilderMultiplexer.html#merge(int, int, double)">merge(int, int, double)</a></span> - Method in class ch.usi.inf.sape.hac.<a href="./ch/usi/inf/sape/hac/ClusteringBuilderMultiplexer.html" title="class in ch.usi.inf.sape.hac">ClusteringBuilderMultiplexer</a></dt>
<dd> </dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/ClusteringMatrixBuilder.html#merge(int, int, double)">merge(int, int, double)</a></span> - Method in class ch.usi.inf.sape.hac.<a href="./ch/usi/inf/sape/hac/ClusteringMatrixBuilder.html" title="class in ch.usi.inf.sape.hac">ClusteringMatrixBuilder</a></dt>
<dd> </dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/dendrogram/DendrogramBuilder.html#merge(int, int, double)">merge(int, int, double)</a></span> - Method in class ch.usi.inf.sape.hac.dendrogram.<a href="./ch/usi/inf/sape/hac/dendrogram/DendrogramBuilder.html" title="class in ch.usi.inf.sape.hac.dendrogram">DendrogramBuilder</a></dt>
<dd> </dd>
<dt><a href="./ch/usi/inf/sape/hac/dendrogram/MergeNode.html" title="class in ch.usi.inf.sape.hac.dendrogram"><span class="strong">MergeNode</span></a> - Class in <a href="./ch/usi/inf/sape/hac/dendrogram/package-summary.html">ch.usi.inf.sape.hac.dendrogram</a></dt>
<dd>
<div class="block">A MergeNode represents an interior node in a Dendrogram.</div>
</dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/dendrogram/MergeNode.html#MergeNode(ch.usi.inf.sape.hac.dendrogram.DendrogramNode, ch.usi.inf.sape.hac.dendrogram.DendrogramNode, double)">MergeNode(DendrogramNode, DendrogramNode, double)</a></span> - Constructor for class ch.usi.inf.sape.hac.dendrogram.<a href="./ch/usi/inf/sape/hac/dendrogram/MergeNode.html" title="class in ch.usi.inf.sape.hac.dendrogram">MergeNode</a></dt>
<dd> </dd>
</dl>
<a name="_O_">
<!-- -->
</a>
<h2 class="title">O</h2>
<dl>
<dt><a href="./ch/usi/inf/sape/hac/dendrogram/ObservationNode.html" title="class in ch.usi.inf.sape.hac.dendrogram"><span class="strong">ObservationNode</span></a> - Class in <a href="./ch/usi/inf/sape/hac/dendrogram/package-summary.html">ch.usi.inf.sape.hac.dendrogram</a></dt>
<dd>
<div class="block">An ObservationNode represents a leaf node in a Dendrogram.</div>
</dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/dendrogram/ObservationNode.html#ObservationNode(int)">ObservationNode(int)</a></span> - Constructor for class ch.usi.inf.sape.hac.dendrogram.<a href="./ch/usi/inf/sape/hac/dendrogram/ObservationNode.html" title="class in ch.usi.inf.sape.hac.dendrogram">ObservationNode</a></dt>
<dd> </dd>
</dl>
<a name="_S_">
<!-- -->
</a>
<h2 class="title">S</h2>
<dl>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/HierarchicalAgglomerativeClusterer.html#setAgglomerationMethod(ch.usi.inf.sape.hac.agglomeration.AgglomerationMethod)">setAgglomerationMethod(AgglomerationMethod)</a></span> - Method in class ch.usi.inf.sape.hac.<a href="./ch/usi/inf/sape/hac/HierarchicalAgglomerativeClusterer.html" title="class in ch.usi.inf.sape.hac">HierarchicalAgglomerativeClusterer</a></dt>
<dd> </dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/HierarchicalAgglomerativeClusterer.html#setDissimilarityMeasure(ch.usi.inf.sape.hac.experiment.DissimilarityMeasure)">setDissimilarityMeasure(DissimilarityMeasure)</a></span> - Method in class ch.usi.inf.sape.hac.<a href="./ch/usi/inf/sape/hac/HierarchicalAgglomerativeClusterer.html" title="class in ch.usi.inf.sape.hac">HierarchicalAgglomerativeClusterer</a></dt>
<dd> </dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/HierarchicalAgglomerativeClusterer.html#setExperiment(ch.usi.inf.sape.hac.experiment.Experiment)">setExperiment(Experiment)</a></span> - Method in class ch.usi.inf.sape.hac.<a href="./ch/usi/inf/sape/hac/HierarchicalAgglomerativeClusterer.html" title="class in ch.usi.inf.sape.hac">HierarchicalAgglomerativeClusterer</a></dt>
<dd> </dd>
<dt><a href="./ch/usi/inf/sape/hac/agglomeration/SingleLinkage.html" title="class in ch.usi.inf.sape.hac.agglomeration"><span class="strong">SingleLinkage</span></a> - Class in <a href="./ch/usi/inf/sape/hac/agglomeration/package-summary.html">ch.usi.inf.sape.hac.agglomeration</a></dt>
<dd>
<div class="block">The "single linkage", "minimum", "shortest distance", or "nearest neighbor" method is a graph-based approach.</div>
</dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/agglomeration/SingleLinkage.html#SingleLinkage()">SingleLinkage()</a></span> - Constructor for class ch.usi.inf.sape.hac.agglomeration.<a href="./ch/usi/inf/sape/hac/agglomeration/SingleLinkage.html" title="class in ch.usi.inf.sape.hac.agglomeration">SingleLinkage</a></dt>
<dd> </dd>
</dl>
<a name="_T_">
<!-- -->
</a>
<h2 class="title">T</h2>
<dl>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/agglomeration/AverageLinkage.html#toString()">toString()</a></span> - Method in class ch.usi.inf.sape.hac.agglomeration.<a href="./ch/usi/inf/sape/hac/agglomeration/AverageLinkage.html" title="class in ch.usi.inf.sape.hac.agglomeration">AverageLinkage</a></dt>
<dd> </dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/agglomeration/CentroidLinkage.html#toString()">toString()</a></span> - Method in class ch.usi.inf.sape.hac.agglomeration.<a href="./ch/usi/inf/sape/hac/agglomeration/CentroidLinkage.html" title="class in ch.usi.inf.sape.hac.agglomeration">CentroidLinkage</a></dt>
<dd> </dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/agglomeration/CompleteLinkage.html#toString()">toString()</a></span> - Method in class ch.usi.inf.sape.hac.agglomeration.<a href="./ch/usi/inf/sape/hac/agglomeration/CompleteLinkage.html" title="class in ch.usi.inf.sape.hac.agglomeration">CompleteLinkage</a></dt>
<dd> </dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/agglomeration/MedianLinkage.html#toString()">toString()</a></span> - Method in class ch.usi.inf.sape.hac.agglomeration.<a href="./ch/usi/inf/sape/hac/agglomeration/MedianLinkage.html" title="class in ch.usi.inf.sape.hac.agglomeration">MedianLinkage</a></dt>
<dd> </dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/agglomeration/SingleLinkage.html#toString()">toString()</a></span> - Method in class ch.usi.inf.sape.hac.agglomeration.<a href="./ch/usi/inf/sape/hac/agglomeration/SingleLinkage.html" title="class in ch.usi.inf.sape.hac.agglomeration">SingleLinkage</a></dt>
<dd> </dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/agglomeration/WardLinkage.html#toString()">toString()</a></span> - Method in class ch.usi.inf.sape.hac.agglomeration.<a href="./ch/usi/inf/sape/hac/agglomeration/WardLinkage.html" title="class in ch.usi.inf.sape.hac.agglomeration">WardLinkage</a></dt>
<dd> </dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/agglomeration/WeightedAverageLinkage.html#toString()">toString()</a></span> - Method in class ch.usi.inf.sape.hac.agglomeration.<a href="./ch/usi/inf/sape/hac/agglomeration/WeightedAverageLinkage.html" title="class in ch.usi.inf.sape.hac.agglomeration">WeightedAverageLinkage</a></dt>
<dd> </dd>
</dl>
<a name="_W_">
<!-- -->
</a>
<h2 class="title">W</h2>
<dl>
<dt><a href="./ch/usi/inf/sape/hac/agglomeration/WardLinkage.html" title="class in ch.usi.inf.sape.hac.agglomeration"><span class="strong">WardLinkage</span></a> - Class in <a href="./ch/usi/inf/sape/hac/agglomeration/package-summary.html">ch.usi.inf.sape.hac.agglomeration</a></dt>
<dd>
<div class="block">The "Ward", "inner squared distance", "sum of squares", "error sum of squares",
or "minimum variance" method.</div>
</dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/agglomeration/WardLinkage.html#WardLinkage()">WardLinkage()</a></span> - Constructor for class ch.usi.inf.sape.hac.agglomeration.<a href="./ch/usi/inf/sape/hac/agglomeration/WardLinkage.html" title="class in ch.usi.inf.sape.hac.agglomeration">WardLinkage</a></dt>
<dd> </dd>
<dt><a href="./ch/usi/inf/sape/hac/agglomeration/WeightedAverageLinkage.html" title="class in ch.usi.inf.sape.hac.agglomeration"><span class="strong">WeightedAverageLinkage</span></a> - Class in <a href="./ch/usi/inf/sape/hac/agglomeration/package-summary.html">ch.usi.inf.sape.hac.agglomeration</a></dt>
<dd>
<div class="block">The "weighted average", "McQuitty", or
"Weighted Pair-Group Method using Arithmetic averages, or WPGMA)" method.</div>
</dd>
<dt><span class="strong"><a href="./ch/usi/inf/sape/hac/agglomeration/WeightedAverageLinkage.html#WeightedAverageLinkage()">WeightedAverageLinkage()</a></span> - Constructor for class ch.usi.inf.sape.hac.agglomeration.<a href="./ch/usi/inf/sape/hac/agglomeration/WeightedAverageLinkage.html" title="class in ch.usi.inf.sape.hac.agglomeration">WeightedAverageLinkage</a></dt>
<dd> </dd>
</dl>
<a href="#_A_">A</a> <a href="#_C_">C</a> <a href="#_D_">D</a> <a href="#_E_">E</a> <a href="#_G_">G</a> <a href="#_H_">H</a> <a href="#_M_">M</a> <a href="#_O_">O</a> <a href="#_S_">S</a> <a href="#_T_">T</a> <a href="#_W_">W</a> </div>
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