/usr/share/ncbi/data/makerpt.prt is in ncbi-data 6.1.20120620-8.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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2422 2423 2424 2425 2426 2427 2428 2429 2430 2431 2432 2433 2434 2435 2436 2437 2438 2439 2440 2441 2442 2443 2444 2445 2446 2447 2448 | PrintTemplateSet ::= {
{
name "StdSeqDesc" ,
format {
asn1 "Seqdesc" ,
form
block {
components {
{
asn1 "Seqdesc.mol-type" ,
label "Molecule type" ,
prefix "\n" ,
form
enum {
} } ,
{
asn1 "Seqdesc.modif" ,
label "Modifiers" ,
prefix "\n" ,
form
block {
separator ", " ,
components {
{
asn1 "Seqdesc.modif.E" ,
form
enum {
} } } } } ,
{
asn1 "Seqdesc.method" ,
label "Method" ,
prefix "\n" ,
form
enum {
} } ,
{
asn1 "Seqdesc.name" ,
label "Name" ,
prefix "\n" ,
form
text {
} } ,
{
asn1 "Seqdesc.title" ,
label "Title" ,
prefix "\n" ,
form
text {
} } ,
{
asn1 "Seqdesc.org" ,
label "Organism" ,
prefix "\n" ,
form
use-template "StdOrgRef" } ,
{
asn1 "Seqdesc.comment" ,
label "Comment" ,
prefix "\n" ,
form
text {
} } ,
{
asn1 "Seqdesc.num" ,
label "Numbering" ,
prefix "\n" ,
form
use-template "StdNumbering" } ,
{
asn1 "Seqdesc.maploc" ,
label "Map location" ,
prefix "\n" ,
form
use-template "StdDbtag" } ,
{
asn1 "Seqdesc.pir" ,
label "PIR block" ,
prefix "\n" ,
form
null NULL } ,
{
asn1 "Seqdesc.genbank" ,
label "GenBank block" ,
prefix "\n" ,
form
use-template "StdGBBlock" } ,
{
asn1 "Seqdesc.pub" ,
label "Citation" ,
prefix "\n" ,
form
use-template "StdPubdesc" } ,
{
asn1 "Seqdesc.region" ,
label "Region" ,
prefix "\n" ,
form
text {
} } ,
{
asn1 "Seqdesc.user" ,
label "User Type" ,
prefix "\n" ,
form
use-template "StdUserObj" } ,
{
asn1 "Seqdesc.sp" ,
label "SWISS-PROT block" ,
prefix "\n" ,
form
null NULL } ,
{
asn1 "Seqdesc.dbxref" ,
label "Cross reference" ,
prefix "\n" ,
form
use-template "StdDbtag" } ,
{
asn1 "Seqdesc.embl" ,
label "EMBL block" ,
prefix "\n" ,
form
null NULL } ,
{
asn1 "Seqdesc.create-date" ,
label "Create date" ,
prefix "\n" ,
form
user {
printfunc "StdDatePrint" } } ,
{
asn1 "Seqdesc.update-date" ,
label "Update date" ,
prefix "\n" ,
form
user {
printfunc "StdDatePrint" } } ,
{
asn1 "Seqdesc.prf" ,
label "PRF block" ,
prefix "\n" ,
form
null NULL } ,
{
asn1 "Seqdesc.pdb" ,
label "PDB block" ,
prefix "\n" ,
form
null NULL } ,
{
asn1 "Seqdesc.het" ,
label "Heterogen" ,
prefix "\n" ,
form
text {
} } ,
{
asn1 "Seqdesc.source" ,
label "Source" ,
prefix "\n" ,
form
null NULL } ,
{
asn1 "Seqdesc.molinfo" ,
label "Mol info" ,
prefix "\n" ,
form
null NULL } } } } } ,
{
name "StdReportSeqDesc" ,
format {
asn1 "Seqdesc" ,
form
block {
components {
{
asn1 "Seqdesc.mol-type" ,
label "Molecule type" ,
prefix "\n" ,
form
enum {
} } ,
{
asn1 "Seqdesc.modif" ,
label "Modifiers" ,
prefix "\n" ,
form
block {
separator ", " ,
components {
{
asn1 "Seqdesc.modif.E" ,
form
enum {
} } } } } ,
{
asn1 "Seqdesc.method" ,
label "Method" ,
prefix "\n" ,
form
enum {
} } ,
{
asn1 "Seqdesc.name" ,
label "Name" ,
prefix "\n" ,
form
text {
} } ,
{
asn1 "Seqdesc.title" ,
label "Title" ,
prefix "\n" ,
form
text {
} } ,
{
asn1 "Seqdesc.org" ,
label "Organism" ,
prefix "\n" ,
form
use-template "StdOrgRef" } ,
{
asn1 "Seqdesc.comment" ,
label "Comment" ,
prefix "\n" ,
form
text {
} } ,
{
asn1 "Seqdesc.num" ,
label "Numbering" ,
prefix "\n" ,
form
use-template "StdNumbering" } ,
{
asn1 "Seqdesc.maploc" ,
label "Map location" ,
prefix "\n" ,
form
use-template "StdDbtag" } ,
{
asn1 "Seqdesc.pir" ,
label "PIR block" ,
prefix "\n" ,
form
null NULL } ,
{
asn1 "Seqdesc.genbank" ,
prefix "\n" ,
form
use-template "StdReportGBBlock" } ,
{
asn1 "Seqdesc.pub" ,
label "Citation" ,
prefix "\n" ,
form
use-template "StdPubdesc" } ,
{
asn1 "Seqdesc.region" ,
label "Region" ,
prefix "\n" ,
form
text {
} } ,
{
asn1 "Seqdesc.user" ,
label "User Type" ,
prefix "\n" ,
form
use-template "StdUserObj" } ,
{
asn1 "Seqdesc.sp" ,
label "SWISS-PROT block" ,
prefix "\n" ,
form
null NULL } ,
{
asn1 "Seqdesc.neighbors" ,
label "Neighbors" ,
prefix "\n" ,
form
null NULL } ,
{
asn1 "Seqdesc.embl" ,
label "EMBL block" ,
prefix "\n" ,
form
null NULL } ,
{
asn1 "Seqdesc.create-date" ,
label "Create date" ,
prefix "\n" ,
form
user {
printfunc "StdDatePrint" } } ,
{
asn1 "Seqdesc.update-date" ,
label "Update date" ,
prefix "\n" ,
form
user {
printfunc "StdDatePrint" } } ,
{
asn1 "Seqdesc.prf" ,
label "PRF block" ,
prefix "\n" ,
form
null NULL } ,
{
asn1 "Seqdesc.pdb" ,
label "PDB block" ,
prefix "\n" ,
form
null NULL } ,
{
asn1 "Seqdesc.het" ,
label "Heterogen" ,
prefix "\n" ,
form
text {
} } ,
{
asn1 "Seqdesc.source" ,
label "Source" ,
prefix "\n" ,
form
null NULL } ,
{
asn1 "Seqdesc.molinfo" ,
label "Mol info" ,
prefix "\n" ,
form
null NULL } } } } } ,
{
name "StdSourceDesc" ,
format {
asn1 "Seqdesc" ,
form
block {
components {
{
asn1 "Seqdesc.genbank" ,
prefix "\n" ,
form
use-template "StdSourceInGBBlock" } } } } } ,
{
name "StdTaxDesc" ,
format {
asn1 "Seqdesc" ,
form
block {
components {
{
asn1 "Seqdesc.genbank" ,
prefix "\n" ,
form
use-template "StdTaxInGBBlock" } } } } } ,
{
name "StdDivDesc" ,
format {
asn1 "Seqdesc" ,
form
block {
components {
{
asn1 "Seqdesc.genbank" ,
prefix "\n" ,
form
use-template "StdDivInGBBlock" } } } } } ,
{
name "StdSequenceId" ,
format {
asn1 "Seq-id" ,
form
block {
components {
{
asn1 "Seq-id.gi" ,
label "gi|" ,
form
text {
} } ,
{
asn1 "Seq-id.genbank" ,
form
use-template "ReportTextseqId" } ,
{
asn1 "Seq-id.local" ,
form
use-template "StdObjectId" } } } } } ,
{
name "StdPubSeqId" ,
format {
asn1 "Seq-id" ,
label "" ,
prefix "; " ,
form
block {
components {
{
asn1 "Seq-id.gi" ,
label "gi|" ,
form
text {
} } ,
{
asn1 "Seq-id.local" ,
form
use-template "StdObjectId" } } } } } ,
{
name "StartingPubSeqId" ,
format {
asn1 "Seq-id" ,
label "Location:" ,
prefix "\t" ,
form
block {
components {
{
asn1 "Seq-id.gi" ,
label "gi|" ,
form
text {
} } ,
{
asn1 "Seq-id.local" ,
form
use-template "StdObjectId" } } } } } ,
{
name "StdObjectId" ,
format {
asn1 "Object-id" ,
form
block {
components {
{
asn1 "Object-id.id" ,
form
text {
} } ,
{
asn1 "Object-id.str" ,
form
text {
} } } } } } ,
{
name "StdTextseqId" ,
format {
asn1 "Textseq-id" ,
form
block {
components {
{
asn1 "Textseq-id.name" ,
label "locus" ,
prefix " " ,
form
text {
} } ,
{
asn1 "Textseq-id.accession" ,
label "accession" ,
prefix " " ,
form
text {
} } ,
{
asn1 "Textseq-id.release" ,
label "release" ,
prefix " " ,
form
text {
} } ,
{
asn1 "Textseq-id.version" ,
form
null NULL } ,
} } } } ,
{
name "ReportTextseqId" ,
format {
asn1 "Textseq-id" ,
form
block {
components {
{
asn1 "Textseq-id.name" ,
label "locus" ,
prefix " " ,
suffix " " ,
form
text {
} } ,
{
asn1 "Textseq-id.accession" ,
label "accession" ,
prefix " " ,
suffix " " ,
form
text {
} } ,
{
asn1 "Textseq-id.release" ,
label "release" ,
prefix " " ,
suffix " " ,
form
text {
} } ,
{
asn1 "Textseq-id.version" ,
form
null NULL } ,
} } } } ,
{
name "StdPDBseqId" ,
format {
asn1 "PDB-seq-id" ,
label "PDB Id: " ,
form
block {
components {
{
asn1 "PDB-seq-id.mol" ,
label "molecule" ,
prefix " " ,
suffix ", " ,
form
text {
} } ,
{
asn1 "PDB-seq-id.chain" ,
label "chain" ,
prefix " " ,
suffix ", " ,
form
text {
} } ,
{
asn1 "PDB-seq-id.rel" ,
label "release" ,
prefix " " ,
form
user {
printfunc "StdDatePrint" } } } } } } ,
{
name "StdEMBLseqId" ,
format {
asn1 "Textseq-id" ,
form
block {
components {
{
asn1 "Textseq-id.name" ,
label "locus" ,
prefix " " ,
suffix ", " ,
form
text {
} } ,
{
asn1 "Textseq-id.accession" ,
label "accession" ,
prefix " " ,
form
text {
} } ,
{
asn1 "Textseq-id.release" ,
label "release" ,
prefix " " ,
form
text {
} } ,
{
asn1 "Textseq-id.version" ,
form
null NULL } ,
} } } } ,
{
name "StdPIRseqId" ,
format {
asn1 "Textseq-id" ,
form
block {
components {
{
asn1 "Textseq-id.name" ,
label "locus" ,
prefix " " ,
suffix "" ,
form
text {
} } ,
{
asn1 "Textseq-id.accession" ,
label " accession" ,
prefix " " ,
form
text {
} } ,
} } } } ,
{
name "StdPRFseqId" ,
format {
asn1 "Textseq-id" ,
form
block {
components {
{
asn1 "Textseq-id.name" ,
label "locus" ,
prefix " " ,
suffix "" ,
form
text {
} } ,
{
asn1 "Textseq-id.accession" ,
label " accession" ,
prefix " " ,
form
text {
} } ,
} } } } ,
{
name "StdPDBseqId" ,
format {
asn1 "Textseq-id" ,
form
block {
components {
{
asn1 "Textseq-id.name" ,
label "locus" ,
prefix " " ,
suffix "" ,
form
text {
} } ,
{
asn1 "Textseq-id.accession" ,
label " accession" ,
prefix " " ,
form
text {
} } ,
} } } } ,
{
name "StdSPseqId" ,
format {
asn1 "Textseq-id" ,
form
block {
components {
{
asn1 "Textseq-id.name" ,
label "locus" ,
prefix " " ,
suffix "," ,
form
text {
} } ,
{
asn1 "Textseq-id.accession" ,
label " accession" ,
prefix " " ,
form
text {
} } ,
} } } } ,
{
name "StdLocalId" ,
format {
asn1 "Object-id" ,
form
block {
components {
{
asn1 "Object-id.id" ,
prefix " " ,
suffix "" ,
form
text {
} } ,
{
asn1 "Object-id.str" ,
prefix " " ,
suffix "" ,
form
text {
} } } } } } ,
{
name "StdGPseqId" ,
format {
asn1 "Textseq-id" ,
form
block {
components {
{
asn1 "Textseq-id.name" ,
label "locus" ,
prefix " " ,
suffix "," ,
form
text {
} } ,
{
asn1 "Textseq-id.accession" ,
label " accession" ,
prefix " " ,
form
text {
} } ,
} } } } ,
{
name "StdIdPat" ,
format {
asn1 "Id-pat" ,
form
block {
components {
{
asn1 "Id-pat.country" ,
suffix " " ,
form
text {
} } ,
{
asn1 "Id-pat.id.number" ,
form
text {
} } ,
{
asn1 "Id-pat.id.app-number" ,
prefix "Appl: " ,
form
text {
} } } } } } ,
{
name "StdPatentSeqId" ,
format {
asn1 "Patent-seq-id" ,
label "patent: " ,
form
block {
components {
{
asn1 "Patent-seq-id.seqid" ,
suffix " " ,
form
text {
} } ,
{
asn1 "Patent-seq-id.cit" ,
prefix " " ,
form
use-template "StdIdPat" } } } } } ,
{
name "StdSeqFeatLocation" ,
format {
asn1 "Seq-feat.location" ,
label "Location" ,
prefix "\t" ,
form
user {
printfunc "StdSeqLocPrint" } } } ,
{
name "StdSeqFeatProduct" ,
format {
asn1 "Seq-feat.product" ,
label "Product" ,
prefix "\t" ,
form
user {
printfunc "StdSeqLocPrint" } } } ,
{
name "EntrySeqFeatData" ,
labelfrom "Seq-feat.data" ,
format {
asn1 "Seq-feat.data" ,
prefix "\t" ,
form
use-template "StdSeqFeatData" } } ,
{
name "StdSeqFeat" ,
labelfrom "Seq-feat.data" ,
format {
asn1 "Seq-feat" ,
prefix "\n" ,
suffix "\n" ,
form
block {
separator "\n" ,
components {
{
asn1 "Seq-feat.data" ,
form
use-template "StdSeqFeatData" } ,
{
asn1 "Seq-feat" ,
form
use-template "StdSeqFeatCommon" } ,
{
asn1 "Seq-feat.product" ,
label "Product" ,
prefix " " ,
form
user {
printfunc "StdSeqLocPrint" } } ,
{
asn1 "Seq-feat.location" ,
label "Location" ,
prefix " " ,
form
user {
printfunc "StdSeqLocPrint" } } ,
{
asn1 "Seq-feat.cit" ,
label "Citations" ,
prefix "\n" ,
form
block {
separator "\n" ,
components {
{
asn1 "Seq-feat.cit.pub.E" ,
form
use-template "StdPub" } } } } ,
{
asn1 "Seq-feat.xref" ,
label "Cross-reference" ,
prefix "\n" ,
form
block {
separator "\n" ,
components {
{
asn1 "Seq-feat.xref.E" ,
form
use-template "StdSeqFeatXref" } } } } } } } } ,
{
name "StdSeqFeatData" ,
format {
asn1 "SeqFeatData" ,
form
block {
components {
{
asn1 "SeqFeatData.gene" ,
label "Gene" ,
form
use-template "StdGeneRef" } ,
{
asn1 "SeqFeatData.org" ,
label "Organism" ,
form
use-template "StdOrgRef" } ,
{
asn1 "SeqFeatData.cdregion" ,
label "Coding Region" ,
form
use-template "StdCdRegion" } ,
{
asn1 "SeqFeatData.prot" ,
label "Protein" ,
form
use-template "StdProtRef" } ,
{
asn1 "SeqFeatData.rna" ,
label "RNA" ,
form
use-template "StdRNARef" } ,
{
asn1 "SeqFeatData.pub" ,
label "Citation" ,
form
use-template "StdPubdesc" } ,
{
asn1 "SeqFeatData.seq" ,
label "Sequence" ,
form
user {
printfunc "StdSeqLocPrint" } } ,
{
asn1 "SeqFeatData.imp.key" ,
label "Import" ,
form
use-template "StdImpFeat" } ,
{
asn1 "SeqFeatData.region" ,
label "Region" ,
form
text {
} } ,
{
asn1 "SeqFeatData.comment" ,
label "Comment" ,
form
null NULL } ,
{
asn1 "SeqFeatData.bond" ,
label "Bond" ,
form
enum {
} } ,
{
asn1 "SeqFeatData.site" ,
label "Site" ,
form
enum {
} } ,
{
asn1 "SeqFeatData.rsite" ,
label "Rest. Site" ,
form
use-template "StdRsiteRef" } ,
{
asn1 "SeqFeatData.user" ,
label "User Type" ,
form
use-template "StdUserObj" } ,
{
asn1 "SeqFeatData.txinit" ,
label "TxInit" ,
form
use-template "StdTxInit" } ,
{
asn1 "SeqFeatData.num" ,
label "Numbering" ,
form
use-template "StdNumbering" } ,
{
asn1 "SeqFeatData.psec-str" ,
label "Sec. Struct" ,
form
enum {
} } ,
{
asn1 "SeqFeatData.non-std-residue" ,
label "NonStd Residue" ,
form
text {
} } ,
{
asn1 "SeqFeatData.het" ,
label "Heterogen" ,
form
text {
} } ,
{
asn1 "SeqFeatData.biosrc" ,
label "BioSource" ,
form
null NULL } } } } } ,
{
name "StdGeneRef" ,
format {
asn1 "Gene-ref" ,
form
block {
separator "\n" ,
components {
{
asn1 "Gene-ref" ,
form
block {
components {
{
asn1 "Gene-ref.locus" ,
form
text {
} } ,
{
asn1 "Gene-ref.allele" ,
prefix " " ,
form
text {
} } } } } ,
{
asn1 "Gene-ref.desc" ,
prefix "[" ,
suffix "]" ,
form
text {
} } ,
{
asn1 "Gene-ref.pseudo" ,
form
boolean {
true "This is a pseudogene." } } ,
{
asn1 "Gene-ref.syn" ,
label "Synonyms" ,
prefix " (" ,
suffix ")" ,
form
block {
separator ", " ,
components {
{
asn1 "Gene-ref.syn.E" ,
form
text {
} } } } } ,
{
asn1 "Gene-ref.maploc" ,
label "Map Location" ,
prefix " " ,
form
text {
} } ,
{
asn1 "Gene-ref.db" ,
label "Cross Reference" ,
prefix " " ,
form
block {
separator ", " ,
components {
{
asn1 "Gene-ref.db.E" ,
prefix "(" ,
suffix ")" ,
form
use-template "StdDbtag" } } } } } } } } ,
{
name "StdUserObj" ,
format {
asn1 "User-object" ,
label "User-object" ,
form
block {
separator "\n" ,
components {
{
asn1 "User-object.class" ,
form
text {
} } ,
{
asn1 "User-object.type" ,
form
use-template "StdObjectId" } } } } } ,
{
name "StartingPubFeatLocation" ,
format {
asn1 "Seq-feat.location" ,
label "Location:" ,
prefix "\t" ,
form
user {
printfunc "StdSeqLocPrint" } } } ,
{
name "StdPubFeatLocation" ,
format {
asn1 "Seq-feat.location" ,
label "" ,
prefix "; " ,
form
user {
printfunc "StdSeqLocPrint" } } } ,
{
name "StdPubOnFeat" ,
format {
asn1 "Pub" ,
label "Citation" ,
prefix "\n" ,
form
block {
separator "\n" ,
components {
{
asn1 "Pub" ,
form
use-template "StdPub" } } } } } ,
{
name "StdPub" ,
format {
asn1 "Pub" ,
form
block {
separator "\n" ,
components {
{
asn1 "Pub.gen" ,
form
use-template "StdCitGen" } ,
{
asn1 "Pub.sub" ,
form
use-template "StdCitSub" } ,
{
asn1 "Pub.medline" ,
form
use-template "StdMedlineEntry" } ,
{
asn1 "Pub.muid" ,
label "MEDLINE uid: " ,
form
text {
} } ,
{
asn1 "Pub.article" ,
form
use-template "StdCitArt" } ,
{
asn1 "Pub.journal" ,
form
use-template "StdCitJour" } ,
{
asn1 "Pub.book" ,
form
use-template "StdCitBook" } ,
{
asn1 "Pub.proc" ,
form
use-template "StdCitProc" } ,
{
asn1 "Pub.patent" ,
form
use-template "StdCitPat" } ,
{
asn1 "Pub.pat-id" ,
form
use-template "StdIdPat" } ,
{
asn1 "Pub.man" ,
form
use-template "StdCitLet" } ,
{
asn1 "Pub.equiv" ,
form
use-template "StdPubEquiv" } } } } } ,
{
name "StdCitGen" ,
format {
asn1 "Cit-gen" ,
form
block {
separator "\n" ,
components {
{
asn1 "Cit-gen.serial-number" ,
prefix "[" ,
suffix "]" ,
form
text {
} } ,
{
asn1 "Cit-gen.authors" ,
form
use-template "StdAuthList" } ,
{
asn1 "Cit-gen.date" ,
prefix "(" ,
suffix ")" ,
form
user {
printfunc "StdDatePrint" } } ,
{
asn1 "Cit-gen.title" ,
form
text {
} } ,
{
asn1 "Cit-gen.cit" ,
form
text {
} } ,
{
asn1 "Cit-gen" ,
form
block {
separator " " ,
components {
{
asn1 "Cit-gen.journal" ,
suffix ":" ,
form
use-template "StdTitle" } ,
{
asn1 "Cit-gen.issue" ,
suffix ";" ,
form
text {
} } ,
{
asn1 "Cit-gen.pages" ,
form
text {
} } } } } } } } } ,
{
name "StdCitSub" ,
format {
asn1 "Cit-sub" ,
prefix "Data Submission " ,
form
block {
components {
{
asn1 "Cit-sub.medium" ,
prefix "on " ,
suffix " " ,
form
enum {
} } ,
{
asn1 "Cit-sub.imp.date" ,
prefix "(" ,
suffix ")" ,
form
user {
printfunc "StdDatePrint" } } ,
{
asn1 "Cit-sub.authors" ,
prefix "\n" ,
form
use-template "StdAuthList" } } } } } ,
{
name "StdMedlineEntry" ,
format {
asn1 "Medline-entry" ,
form
block {
separator "\n" ,
components {
{
asn1 "Medline-entry" ,
form
block {
separator " " ,
components {
{
asn1 "Medline-entry.uid" ,
label "uid" ,
prefix ": " ,
form
text {
} } ,
{
asn1 "Medline-entry.em" ,
label "entry month" ,
prefix ": " ,
form
user {
printfunc "StdDatePrint" } } } } } ,
{
asn1 "Medline-entry.cit" ,
form
use-template "StdCitArt" } ,
{
asn1 "Medline-entry.abstract" ,
label "abstract" ,
prefix ": " ,
form
text {
} } ,
{
asn1 "Medline-entry.mesh" ,
label "Mesh Terms" ,
prefix "\n" ,
form
block {
separator "\n" ,
components {
{
asn1 "Medline-entry.mesh.E" ,
form
block {
components {
{
asn1 "Medline-mesh.term" ,
form
text {
} } ,
{
asn1 "Medline-mesh.mp" ,
form
boolean {
true " (Main Point)" } } ,
{
asn1 "Medline-mesh.qual" ,
form
block {
separator "\n" ,
components {
{
asn1 "Medline-mesh.qual.E" ,
form
block {
components {
{
asn1 "Medline-qual.subh" ,
form
text {
} } ,
{
asn1 "Medline-qual.mp" ,
form
boolean {
true " (Main Point)" } } } } } } } } } } } } } } ,
{
asn1 "Medline-entry.substance" ,
label "Substance" ,
prefix "\n" ,
form
block {
separator "\n" ,
components {
{
asn1 "Medline-entry.substance.E" ,
form
block {
components {
{
asn1 "Medline-rn.name" ,
form
text {
} } ,
{
asn1 "Medline-rn.type" ,
form
enum {
values {
"" ,
" CAS: " ,
"EC " } } } ,
{
asn1 "Medline-rn.cit" ,
form
text {
} } } } } } } } ,
{
asn1 "Medline-entry.xref" ,
label "Cross Reference" ,
prefix "\n" ,
form
block {
separator "\n" ,
components {
{
asn1 "Medline-entry.xref.E" ,
form
block {
separator ": " ,
components {
{
asn1 "Medline-si.type" ,
form
enum {
} } ,
{
asn1 "Medline-si.cit" ,
form
text {
} } } } } } } } ,
{
asn1 "Medline-entry.gene" ,
label "Possible Gene Symbols" ,
prefix ": " ,
form
block {
separator ", " ,
components {
{
asn1 "Medline-entry.gene.E" ,
form
text {
} } } } } ,
{
asn1 "Medline-entry.idnum" ,
label "Support" ,
prefix ": " ,
form
block {
separator ", " ,
components {
{
asn1 "Medline-entry.idnum.E" ,
form
text {
} } } } } } } } } ,
{
name "StdCitArt" ,
format {
asn1 "Cit-art" ,
form
block {
separator "\n" ,
components {
{
asn1 "Cit-art.title" ,
form
use-template "StdTitle" } ,
{
asn1 "Cit-art.authors" ,
form
use-template "StdAuthList" } ,
{
asn1 "Cit-art.from.journal" ,
form
use-template "StdCitJour" } ,
{
asn1 "Cit-art.from.book" ,
prefix "(in) " ,
form
use-template "StdCitBook" } ,
{
asn1 "Cit-art.from.proc" ,
prefix "(in) " ,
form
use-template "StdCitProc" } } } } } ,
{
name "StdCitJour" ,
format {
asn1 "Cit-jour" ,
form
block {
separator " " ,
components {
{
asn1 "Cit-jour.title" ,
form
use-template "StdTitle" } ,
{
asn1 "Cit-jour.imp" ,
form
use-template "StdImprint" } } } } } ,
{
name "StdCitBook" ,
format {
asn1 "Cit-book" ,
form
block {
separator "\n" ,
components {
{
asn1 "Cit-book.title" ,
form
use-template "StdTitle" } ,
{
asn1 "Cit-book.coll" ,
prefix "Collection: " ,
form
use-template "StdTitle" } ,
{
asn1 "Cit-book.authors" ,
form
use-template "StdAuthList" } ,
{
asn1 "Cit-book.imp" ,
form
use-template "StdImprint" } } } } } ,
{
name "StdCitProc" ,
format {
asn1 "Cit-proc" ,
form
block {
separator "\n" ,
components {
{
asn1 "Cit-proc.book" ,
form
use-template "StdCitBook" } ,
{
asn1 "Cit-proc.meet" ,
label "Meeting " ,
form
block {
separator ", " ,
components {
{
asn1 "Meeting.number" ,
form
text {
} } ,
{
asn1 "Meeting.date" ,
form
user {
printfunc "StdDatePrint" } } ,
{
asn1 "Meeting.place" ,
form
use-template "StdAffil" } } } } } } } } ,
{
name "StdCitPat" ,
format {
asn1 "Cit-pat" ,
form
block {
separator "\n" ,
components {
{
asn1 "Cit-pat.title" ,
form
text {
} } ,
{
asn1 "Cit-pat.authors" ,
form
use-template "StdAuthList" } ,
{
asn1 "Cit-pat" ,
form
block {
components {
{
asn1 "Cit-pat.country" ,
suffix " " ,
form
text {
} } ,
{
asn1 "Cit-pat.doc-type" ,
form
text {
} } ,
{
asn1 "Cit-pat.number" ,
form
text {
} } ,
{
asn1 "Cit-pat.date-issue" ,
prefix " (" ,
suffix ")" ,
form
user {
printfunc "StdDatePrint" } } ,
{
asn1 "Cit-pat.app-number" ,
prefix " Appl: " ,
form
text {
} } ,
{
asn1 "Cit-pat.app-date" ,
prefix " (" ,
suffix ")" ,
form
user {
printfunc "StdDatePrint" } } } } } } } } } ,
{
name "StdIdPat" ,
format {
asn1 "Id-pat" ,
form
block {
components {
{
asn1 "Id-pat.country" ,
suffix " " ,
form
text {
} } ,
{
asn1 "Id-pat.id.number" ,
form
text {
} } ,
{
asn1 "Id-pat.id.app-number" ,
prefix "Appl: " ,
form
text {
} } } } } } ,
{
name "StdCitLet" ,
format {
asn1 "Cit-let" ,
form
block {
separator "\n" ,
components {
{
asn1 "Cit-let.type" ,
prefix "[" ,
suffix "]" ,
form
enum {
} } ,
{
asn1 "Cit-let.man-id" ,
form
text {
} } ,
{
asn1 "Cit-let.cit" ,
form
use-template "StdCitBook" } } } } } ,
{
name "StdPubEquiv" ,
format {
asn1 "Pub-equiv" ,
form
block {
separator "\n" ,
components {
{
asn1 "Pub-equiv.E" ,
form
use-template "StdPub" } } } } } ,
{
name "StdTitle" ,
format {
asn1 "Title" ,
form
block {
separator ", " ,
components {
{
asn1 "Title.E.trans" ,
prefix "[" ,
suffix "]" ,
form
text {
} } ,
{
asn1 "Title.E.name" ,
form
text {
} } ,
{
asn1 "Title.E.tsub" ,
form
text {
} } ,
{
asn1 "Title.E.abr" ,
form
text {
} } ,
{
asn1 "Title.E.iso-jta" ,
form
text {
} } ,
{
asn1 "Title.E.ml-jta" ,
label "MEDLINE" ,
prefix ": " ,
form
text {
} } ,
{
asn1 "Title.E.jta" ,
label "jta" ,
prefix ": " ,
form
text {
} } ,
{
asn1 "Title.E.issn" ,
label "ISSN" ,
prefix ": " ,
form
text {
} } ,
{
asn1 "Title.E.coden" ,
label "CODEN" ,
prefix ": " ,
form
text {
} } ,
{
asn1 "Title.E.isbn" ,
label "ISBN" ,
prefix ": " ,
form
text {
} } } } } } ,
{
name "StdAuthList" ,
format {
asn1 "Auth-list" ,
form
block {
separator "\n" ,
components {
{
asn1 "Auth-list" ,
form
user {
printfunc "StdAuthListNamesPrint" } } ,
{
asn1 "Auth-list.affil" ,
form
use-template "StdAffil" } } } } } ,
{
name "StdAffil" ,
format {
asn1 "Affil" ,
form
block {
separator "\n" ,
components {
{
asn1 "Affil.str" ,
form
text {
} } ,
{
asn1 "Affil.std.affil" ,
form
text {
} } ,
{
asn1 "Affil.std.div" ,
form
text {
} } ,
{
asn1 "Affil.std.street" ,
form
text {
} } ,
{
asn1 "Affil.std" ,
form
block {
separator " " ,
components {
{
asn1 "Affil.std.city" ,
form
text {
} } ,
{
asn1 "Affil.std.sub" ,
form
text {
} } ,
{
asn1 "Affil.std.country" ,
form
text {
} } } } } } } } } ,
{
name "StdImprint" ,
format {
asn1 "Imprint" ,
form
block {
components {
{
asn1 "Imprint.date" ,
prefix "(" ,
suffix ") " ,
form
user {
printfunc "StdDatePrint" } } ,
{
asn1 "Imprint.volume" ,
form
text {
} } ,
{
asn1 "Imprint.issue" ,
prefix " (" ,
suffix ")" ,
form
text {
} } ,
{
asn1 "Imprint.section" ,
prefix " (" ,
suffix ")" ,
form
text {
} } ,
{
asn1 "Imprint.part-sup" ,
prefix " (" ,
suffix ")" ,
form
text {
} } ,
{
asn1 "Imprint.pages" ,
prefix ": " ,
form
text {
} } ,
{
asn1 "Imprint.prepub" ,
prefix " (" ,
suffix ")" ,
form
enum {
} } ,
{
asn1 "Imprint.pub" ,
label "\nPublisher: " ,
form
use-template "StdAffil" } ,
{
asn1 "Imprint.cprt" ,
label " Copyright: " ,
form
user {
printfunc "StdDatePrint" } } } } } } ,
{
name "StdSeqFeatXref" ,
format {
asn1 "SeqFeatXref" ,
form
block {
separator "\n" ,
components {
{
asn1 "SeqFeatXref.id" ,
label "Id=" ,
form
use-template "StdFeatId" } ,
{
asn1 "SeqFeatXref.data" ,
form
use-template "StdSeqFeatData" } } } } } ,
{
name "StdOrgRef" ,
format {
asn1 "Org-ref" ,
label "Org-ref" ,
prefix "\n" ,
form
block {
separator "\n" ,
components {
{
asn1 "Org-ref" ,
form
block {
separator " " ,
components {
{
asn1 "Org-ref.taxname" ,
form
text {
} } ,
{
asn1 "Org-ref.common" ,
prefix "(" ,
suffix ")" ,
form
text {
} } } } } ,
{
asn1 "Org-ref.mod" ,
label "Modifiers" ,
prefix " (" ,
suffix ")" ,
form
block {
separator ", " ,
components {
{
asn1 "Org-ref.mod.E" ,
form
text {
} } } } } ,
{
asn1 "Org-ref.db" ,
label "Cross Reference" ,
prefix " " ,
form
block {
separator ", " ,
components {
{
asn1 "Org-ref.db.E" ,
prefix "(" ,
suffix ")" ,
form
use-template "StdDbtag" } } } } ,
{
asn1 "Org-ref.syn" ,
label "Synonyms" ,
prefix " (" ,
suffix ")" ,
form
block {
separator ", " ,
components {
{
asn1 "Org-ref.syn.E" ,
form
text {
} } } } } } } } } ,
{
name "StdCdRegion" ,
format {
asn1 "Cdregion" ,
label "Cdregion" ,
form
block {
separator "\n" ,
components {
{
asn1 "Cdregion.orf" ,
form
boolean {
true "Uncharacterized Open Reading Frame" } } ,
{
asn1 "Cdregion.frame" ,
label "Reading Frame = " ,
form
enum {
} } ,
{
asn1 "Cdregion.code" ,
label "Genetic Code: " ,
suffix ";" ,
form
block {
separator ", " ,
components {
{
asn1 "Genetic-code.E.name" ,
form
text {
} } ,
{
asn1 "Genetic-code.E.id" ,
label "id= " ,
form
text {
} } } } } ,
{
asn1 "Cdregion.conflict" ,
form
boolean {
true "Translation conflicts with protein sequence" } } ,
{
asn1 "Cdregion.stops" ,
prefix "Translation contains " ,
suffix " stop codons" ,
form
text {
} } ,
{
asn1 "Cdregion.gaps" ,
prefix "Translation contains " ,
suffix " gaps when aligned to protein" ,
form
text {
} } ,
{
asn1 "Cdregion.mismatch" ,
prefix "Translation contains " ,
suffix " mismatches when aligned to protein" ,
form
text {
} } } } } } ,
{
name "StdProtRef" ,
format {
asn1 "Prot-ref" ,
label "Prot-ref" ,
form
block {
separator "\n" ,
components {
{
asn1 "Prot-ref.name" ,
form
block {
separator ", " ,
components {
{
asn1 "Prot-ref.name.E" ,
form
text {
} } } } } ,
{
asn1 "Prot-ref.desc" ,
prefix "[" ,
suffix "]" ,
form
text {
} } ,
{
asn1 "Prot-ref.ec" ,
label "ec" ,
prefix ": " ,
form
block {
separator ", " ,
components {
{
asn1 "Prot-ref.ec.E" ,
form
text {
} } } } } ,
{
asn1 "Prot-ref.activity" ,
label "activity" ,
prefix ": " ,
form
block {
separator ", " ,
components {
{
asn1 "Prot-ref.activity.E" ,
form
text {
} } } } } ,
{
asn1 "Prot-ref.db" ,
form
use-template "StdDbtag" } } } } } ,
{
name "StdRNARef" ,
format {
asn1 "RNA-ref" ,
label "RNA-ref" ,
form
block {
separator "\n" ,
components {
{
asn1 "RNA-ref.type" ,
form
enum {
} } ,
{
asn1 "RNA-ref.pseudo" ,
form
boolean {
true "This is an RNA pseudogene." } } ,
{
asn1 "RNA-ref.ext.name" ,
form
text {
} } } } } } ,
{
name "StdPubdesc" ,
format {
asn1 "Pubdesc" ,
label "Pubdesc" ,
form
block {
separator "\n" ,
components {
{
asn1 "Pubdesc.pub" ,
form
use-template "StdPubEquiv" } ,
{
asn1 "Pubdesc" ,
prefix "In this article:\n" ,
form
block {
separator "\n" ,
components {
{
asn1 "Pubdesc.name" ,
label "name=" ,
form
text {
} } ,
{
asn1 "Pubdesc.fig" ,
label "figure=" ,
form
text {
} } ,
{
asn1 "Pubdesc.poly-a" ,
form
boolean {
true "poly(A) shown" } } ,
{
asn1 "Pubdesc.maploc" ,
label "map location=" ,
form
text {
} } ,
{
asn1 "Pubdesc.num" ,
form
use-template "StdNumbering" } ,
{
asn1 "Pubdesc.numexc" ,
form
boolean {
true "numbering inconsistent" } } } } } ,
{
asn1 "Pubdesc.comment" ,
form
text {
} } } } } } ,
{
name "StdImpFeat" ,
format {
asn1 "Imp-feat.key" ,
label "Imp-feat" ,
form
text {
} } } ,
{
name "StdRsiteRef" ,
format {
asn1 "Rsite-ref" ,
label "Rsite-ref" ,
form
block {
components {
{
asn1 "Rsite-ref.str" ,
form
text {
} } ,
{
asn1 "Rsite-ref.std" ,
form
use-template "StdDbtag" } } } } } ,
{
name "StdTxInit" ,
format {
asn1 "Txinit" ,
label "TxInit" ,
form
block {
components {
{
asn1 "Txinit.name" ,
form
text {
} } } } } } ,
{
name "StdNumbering" ,
format {
asn1 "Numbering" ,
label "Numbering" ,
form
null NULL } } ,
{
name "StdGBBlock" ,
format {
asn1 "GB-block" ,
label "GenBank-block" ,
form
block {
separator "\n" ,
components {
{
asn1 "GB-block.extra-accessions" ,
label "Extra accessions" ,
prefix " (" ,
suffix ")" ,
form
block {
separator ", " ,
components {
{
asn1 "GB-block.extra-accessions.E" ,
form
text {
} } } } } ,
{
asn1 "GB-block.keywords" ,
label "Keywords" ,
prefix " (" ,
suffix ")" ,
form
block {
separator ", " ,
components {
{
asn1 "GB-block.keywords.E" ,
form
text {
} } } } } ,
{
asn1 "GB-block.source" ,
label "Source: " ,
form
text {
} } ,
{
asn1 "GB-block.origin" ,
label "Origin: " ,
form
text {
} } ,
{
asn1 "GB-block.div" ,
label "Division: " ,
form
text {
} } ,
{
asn1 "GB-block.taxonomy" ,
label "Taxonomy: " ,
form
text {
} } ,
{
asn1 "GB-block.date" ,
label "Date: " ,
form
text {
} } ,
{
asn1 "GB-block.entry-date" ,
label "Entry date: " ,
form
user {
printfunc "StdDatePrint" } } } } } } ,
{
name "StdReportGBBlock" ,
format {
asn1 "GB-block" ,
form
block {
separator "\n" ,
components {
{
asn1 "GB-block.extra-accessions" ,
label "Extra accessions" ,
prefix " (" ,
suffix ")" ,
form
block {
separator ", " ,
components {
{
asn1 "GB-block.extra-accessions.E" ,
form
text {
} } } } } ,
{
asn1 "GB-block.keywords" ,
label "Keywords" ,
prefix " (" ,
suffix ")" ,
form
block {
separator ", " ,
components {
{
asn1 "GB-block.keywords.E" ,
form
text {
} } } } } ,
{
asn1 "GB-block.origin" ,
label "Origin: " ,
form
text {
} } ,
{
asn1 "GB-block.date" ,
label "Date: " ,
form
text {
} } ,
{
asn1 "GB-block.entry-date" ,
label "Entry date: " ,
form
user {
printfunc "StdDatePrint" } } } } } } ,
{
name "StdSourceInGBBlock" ,
format {
asn1 "GB-block" ,
form
block {
separator "\n" ,
components {
{
asn1 "GB-block.source" ,
label "Source: " ,
form
text {
} } } } } } ,
{
name "StdDivInGBBlock" ,
format {
asn1 "GB-block" ,
form
block {
separator "\n" ,
components {
{
asn1 "GB-block.div" ,
label "Division: " ,
form
text {
} } } } } } ,
{
name "StdTaxInGBBlock" ,
format {
asn1 "GB-block" ,
form
block {
separator "\n" ,
components {
{
asn1 "GB-block.taxonomy" ,
label "Taxonomy: " ,
form
text {
} } } } } } ,
{
name "StdFeatId" ,
format {
asn1 "Feat-id" ,
form
block {
components {
{
asn1 "Feat-id.gibb" ,
label "GenInfo Backbone: " ,
form
text {
} } ,
{
asn1 "Feat-id.giim.id" ,
label "GenInfo Import Id: " ,
form
text {
} } ,
{
asn1 "Feat-id.local" ,
label "Local: " ,
form
use-template "StdObjectId" } ,
{
asn1 "Feat-id.general" ,
form
use-template "StdDbtag" } } } } } ,
{
name "StdSeqFeatCommon" ,
format {
asn1 "Seq-feat" ,
form
block {
separator "\n" ,
components {
{
asn1 "Seq-feat.id" ,
label "Id=" ,
form
use-template "StdFeatId" } ,
{
asn1 "Seq-feat.title" ,
form
text {
} } ,
{
asn1 "Seq-feat" ,
suffix ";" ,
form
block {
separator ", " ,
components {
{
asn1 "Seq-feat.partial" ,
form
boolean {
true "Partial" } } ,
{
asn1 "Seq-feat.except" ,
form
boolean {
true "Biological Exception" } } ,
{
asn1 "Seq-feat.exp-ev" ,
label "Evidence" ,
prefix " is " ,
form
enum {
} } } } } ,
{
asn1 "Seq-feat.comment" ,
form
text {
} } ,
{
asn1 "Seq-feat.ext" ,
form
use-template "StdUserObj" } ,
{
asn1 "Seq-feat.qual" ,
label "Qualifiers" ,
prefix "\n" ,
form
block {
separator "\n" ,
components {
{
asn1 "Seq-feat.qual.E" ,
prefix "/" ,
form
block {
separator "= " ,
components {
{
asn1 "Gb-qual.qual" ,
form
text {
} } ,
{
asn1 "Gb-qual.val" ,
form
text {
} } } } } } } } } } } } ,
{
name "StdDbtag" ,
format {
asn1 "Dbtag" ,
form
block {
components {
{
asn1 "Dbtag.db" ,
suffix ": " ,
form
text {
} } ,
{
asn1 "Dbtag.tag" ,
form
use-template "StdObjectId" } } } } } ,
{
name "StdObjectId" ,
format {
asn1 "Object-id" ,
form
block {
components {
{
asn1 "Object-id.id" ,
form
text {
} } ,
{
asn1 "Object-id.str" ,
form
text {
} } } } } } }
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