/usr/sbin/pma-configure is in phpmyadmin 4:4.2.12-2+deb8u2.
This file is owned by root:root, with mode 0o755.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 | #!/bin/sh
echo "Unsecuring phpMyAdmin installation..."
echo "Setup script can now write to the configuration file."
echo
echo "Do not forget to run /usr/sbin/pma-secure after configuring,"
echo "otherwise your installation might be at risk of attack."
chmod 0660 /var/lib/phpmyadmin/config.inc.php
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