/usr/share/pyshared/neo/io/alphaomegaio.py is in python-neo 0.3.3-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655 656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673 674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691 692 693 694 695 696 697 698 699 700 701 702 | # -*- coding: utf-8 -*-
"""
Class for reading data from Alpha Omega .map files.
This class is an experimental reader with important limitations.
See the source code for details of the limitations.
The code of this reader is of alpha quality and received very limited testing.
This code is written from the incomplete file specifications available in:
[1] AlphaMap Data Acquisition System User's Manual Version 10.1.1
Section 5 APPENDIX B: ALPHAMAP FILE STRUCTURE, pages 120-140
Edited by ALPHA OMEGA Home Office: P.O. Box 810, Nazareth Illit 17105, Israel
http://www.alphaomega-eng.com/
and from the source code of a C software for conversion of .map files to
.eeg elan software files :
[2] alphamap2eeg 1.0, 12/03/03, Anne CHEYLUS - CNRS ISC UMR 5015
Supported : Read
@author : sgarcia, Florent Jaillet
"""
# NOTE: For some specific types of comments, the following convention is used:
# "TODO:" Desirable future evolution
# "WARNING:" Information about code that is based on broken or missing
# specifications and that might be wrong
# Main limitations of this reader:
# - The reader is only able to load data stored in data blocks of type 5
# (data block for one channel). In particular it means that it doesn't
# support signals stored in blocks of type 7 (data block for multiple
# channels).
# For more details on these data blocks types, see 5.4.1 and 5.4.2 p 127 in
# [1].
# - Rather than supporting all the neo objects types that could be extracted
# from the file, all read data are returned in AnalogSignal objects, even for
# digital channels or channels containing spiking informations.
# - Digital channels are not converted to events or events array as they
# should.
# - Loading multichannel signals as AnalogSignalArrays is not supported.
# - Many data or metadata that are avalaible in the file and that could be
# represented in some way in the neo model are not extracted. In particular
# scaling of the data and extraction of the units of the signals are not
# supported.
# - It received very limited testing, exlusively using python 2.6.6. In
# particular it has not been tested using Python 3.x.
#
# These limitations are mainly due to the following reasons:
# - Incomplete, unclear and in some places innacurate specifications of the
# format in [1].
# - Lack of test files containing all the types of data blocks of interest
# (in particular no file with type 7 data block for multiple channels where
# available when writing this code).
# - Lack of knowledge of the Alphamap software and the associated data models.
# - Lack of time (especially as the specifications are incomplete, a lot of
# reverse engineering and testing is required, which makes the development of
# this IO very painful and long).
# needed for python 3 compatibility
from __future__ import absolute_import, division
# specific imports
import datetime
import os
import struct
# file no longer exists in Python3
try:
file
except NameError:
import io
file = io.BufferedReader
# note neo.core need only numpy and quantities
import numpy as np
import quantities as pq
from neo.io.baseio import BaseIO
from neo.core import Block, Segment, AnalogSignal
from neo.io.tools import create_many_to_one_relationship, populate_RecordingChannel
class AlphaOmegaIO(BaseIO):
"""
Class for reading data from Alpha Omega .map files (experimental)
This class is an experimental reader with important limitations.
See the source code for details of the limitations.
The code of this reader is of alpha quality and received very limited
testing.
Usage:
>>> from neo import io
>>> r = io.AlphaOmegaIO( filename = 'File_AlphaOmega_1.map')
>>> blck = r.read_block(lazy = False, cascade = True)
>>> print blck.segments[0].analogsignals
"""
is_readable = True # This is a reading only class
is_writable = False # writting is not supported
# This class is able to directly or inderectly read the following kind of
# objects
supported_objects = [ Block, Segment , AnalogSignal]
# TODO: Add support for other objects that should be extractable from .map
# files (AnalogSignalArray, Event, EventArray, Epoch?, Epoch Array?,
# Spike?, SpikeTrain?)
# This class can only return a Block
readable_objects = [ Block ]
# TODO : create readers for different type of objects (Segment,
# AnalogSignal,...)
# This class is not able to write objects
writeable_objects = [ ]
# This is for GUI stuff : a definition for parameters when reading.
read_params = { Block : [ ] }
# Writing is not supported, so no GUI stuff
write_params = None
name = 'AlphaOmega'
extensions = [ 'map' ]
mode = 'file'
def __init__(self , filename = None) :
"""
Arguments:
filename : the .map Alpha Omega file name
"""
BaseIO.__init__(self)
self.filename = filename
# write is not supported so I do not overload write method from BaseIO
def read_block(self,
# the 2 first keyword arguments are imposed by neo.io API
lazy = False,
cascade = True):
"""
Return a Block.
"""
def count_samples(m_length):
"""
Count the number of signal samples available in a type 5 data block
of length m_length
"""
# for information about type 5 data block, see [1]
count = int((m_length-6)/2-2)
# -6 corresponds to the header of block 5, and the -2 take into
# account the fact that last 2 values are not available as the 4
# corresponding bytes are coding the time stamp of the beginning
# of the block
return count
# create the neo Block that will be returned at the end
blck = Block(file_origin = os.path.basename(self.filename))
blck.file_origin = os.path.basename(self.filename)
fid = open(self.filename, 'rb')
# NOTE: in the following, the word "block" is used in the sense used in
# the alpha-omega specifications (ie a data chunk in the file), rather
# than in the sense of the usual Block object in neo
# step 1: read the headers of all the data blocks to load the file
# structure
pos_block = 0 # position of the current block in the file
file_blocks = [] # list of data blocks available in the file
if not cascade:
# we read only the main header
m_length, m_TypeBlock = struct.unpack('Hcx' , fid.read(4))
# m_TypeBlock should be 'h', as we read the first block
block = HeaderReader(fid,
dict_header_type.get(m_TypeBlock,
Type_Unknown)).read_f()
block.update({'m_length': m_length,
'm_TypeBlock': m_TypeBlock,
'pos': pos_block})
file_blocks.append(block)
else: # cascade == True
seg = Segment(file_origin = os.path.basename(self.filename))
seg.file_origin = os.path.basename(self.filename)
blck.segments.append(seg)
while True:
first_4_bytes = fid.read(4)
if len(first_4_bytes) < 4:
# we have reached the end of the file
break
else:
m_length, m_TypeBlock = struct.unpack('Hcx', first_4_bytes)
block = HeaderReader(fid,
dict_header_type.get(m_TypeBlock,
Type_Unknown)).read_f()
block.update({'m_length': m_length,
'm_TypeBlock': m_TypeBlock,
'pos': pos_block})
if m_TypeBlock == '2':
# The beggining of the block of type '2' is identical for
# all types of channels, but the following part depends on
# the type of channel. So we need a special case here.
# WARNING: How to check the type of channel is not
# described in the documentation. So here I use what is
# proposed in the C code [2].
# According to this C code, it seems that the 'm_isAnalog'
# is used to distinguished analog and digital channels, and
# 'm_Mode' encodes the type of analog channel:
# 0 for continuous, 1 for level, 2 for external trigger.
# But in some files, I found channels that seemed to be
# continuous channels with 'm_Modes' = 128 or 192. So I
# decided to consider every channel with 'm_Modes'
# different from 1 or 2 as continuous. I also couldn't
# check that values of 1 and 2 are really for level and
# external trigger as I had no test files containing data
# of this types.
type_subblock = 'unknown_channel_type(m_Mode=' \
+ str(block['m_Mode'])+ ')'
description = Type2_SubBlockUnknownChannels
block.update({'m_Name': 'unknown_name'})
if block['m_isAnalog'] == 0:
# digital channel
type_subblock = 'digital'
description = Type2_SubBlockDigitalChannels
elif block['m_isAnalog'] == 1:
# analog channel
if block['m_Mode'] == 1:
# level channel
type_subblock = 'level'
description = Type2_SubBlockLevelChannels
elif block['m_Mode'] == 2:
# external trigger channel
type_subblock = 'external_trigger'
description = Type2_SubBlockExtTriggerChannels
else:
# continuous channel
type_subblock = 'continuous(Mode' \
+ str(block['m_Mode']) +')'
description = Type2_SubBlockContinuousChannels
subblock = HeaderReader(fid, description).read_f()
block.update(subblock)
block.update({'type_subblock': type_subblock})
file_blocks.append(block)
pos_block += m_length
fid.seek(pos_block)
# step 2: find the available channels
list_chan = [] # list containing indexes of channel blocks
for ind_block, block in enumerate(file_blocks):
if block['m_TypeBlock'] == '2':
list_chan.append(ind_block)
# step 3: find blocks containing data for the available channels
list_data = [] # list of lists of indexes of data blocks
# corresponding to each channel
for ind_chan, chan in enumerate(list_chan):
list_data.append([])
num_chan = file_blocks[chan]['m_numChannel']
for ind_block, block in enumerate(file_blocks):
if block['m_TypeBlock'] == '5':
if block['m_numChannel'] == num_chan:
list_data[ind_chan].append(ind_block)
# step 4: compute the length (number of samples) of the channels
chan_len = np.zeros(len(list_data), dtype = np.int)
for ind_chan, list_blocks in enumerate(list_data):
for ind_block in list_blocks:
chan_len[ind_chan] += count_samples(
file_blocks[ind_block]['m_length'])
# step 5: find channels for which data are available
ind_valid_chan = np.nonzero(chan_len)[0]
# step 6: load the data
# TODO give the possibility to load data as AnalogSignalArrays
for ind_chan in ind_valid_chan:
list_blocks = list_data[ind_chan]
ind = 0 # index in the data vector
# read time stamp for the beginning of the signal
form = '<l' # reading format
ind_block = list_blocks[0]
count = count_samples(file_blocks[ind_block]['m_length'])
fid.seek(file_blocks[ind_block]['pos']+6+count*2)
buf = fid.read(struct.calcsize(form))
val = struct.unpack(form , buf)
start_index = val[0]
# WARNING: in the following blocks are read supposing taht they
# are all contiguous and sorted in time. I don't know if it's
# always the case. Maybe we should use the time stamp of each
# data block to choose where to put the read data in the array.
if not lazy:
temp_array = np.empty(chan_len[ind_chan], dtype = np.int16)
# NOTE: we could directly create an empty AnalogSignal and
# load the data in it, but it is much faster to load data
# in a temporary numpy array and create the AnalogSignals
# from this temporary array
for ind_block in list_blocks:
count = count_samples(
file_blocks[ind_block]['m_length'])
fid.seek(file_blocks[ind_block]['pos']+6)
temp_array[ind:ind+count] = \
np.fromfile(fid, dtype = np.int16, count = count)
ind += count
sampling_rate = \
file_blocks[list_chan[ind_chan]]['m_SampleRate'] * pq.kHz
t_start = (start_index / sampling_rate).simplified
if lazy:
ana_sig = AnalogSignal([],
sampling_rate = sampling_rate,
t_start = t_start,
name = file_blocks\
[list_chan[ind_chan]]['m_Name'],
file_origin = \
os.path.basename(self.filename),
units = pq.dimensionless)
ana_sig.lazy_shape = chan_len[ind_chan]
else:
ana_sig = AnalogSignal(temp_array,
sampling_rate = sampling_rate,
t_start = t_start,
name = file_blocks\
[list_chan[ind_chan]]['m_Name'],
file_origin = \
os.path.basename(self.filename),
units = pq.dimensionless)
ana_sig.channel_index = \
file_blocks[list_chan[ind_chan]]['m_numChannel']
ana_sig.annotate(channel_name = \
file_blocks[list_chan[ind_chan]]['m_Name'])
ana_sig.annotate(channel_type = \
file_blocks[list_chan[ind_chan]]['type_subblock'])
seg.analogsignals.append(ana_sig)
fid.close()
if file_blocks[0]['m_TypeBlock'] == 'h': # this should always be true
blck.rec_datetime = datetime.datetime(\
file_blocks[0]['m_date_year'],
file_blocks[0]['m_date_month'],
file_blocks[0]['m_date_day'],
file_blocks[0]['m_time_hour'],
file_blocks[0]['m_time_minute'],
file_blocks[0]['m_time_second'],
10000 * file_blocks[0]['m_time_hsecond'])
# the 10000 is here to convert m_time_hsecond from centisecond
# to microsecond
version = file_blocks[0]['m_version']
blck.annotate(alphamap_version = version)
if cascade:
seg.rec_datetime = blck.rec_datetime.replace()
# I couldn't find a simple copy function for datetime,
# using replace without arguments is a twisted way to make a
# copy
seg.annotate(alphamap_version = version)
if cascade:
populate_RecordingChannel(blck, remove_from_annotation = True)
create_many_to_one_relationship(blck)
return blck
"""
Information for special types in [1]:
_dostime_t type definition:
struct dos_time_t
{
unsigned char hour; /* hours (0-23)*/
unsigned char minute; /* minutes (0-59)*/
unsigned char second; /* seconds (0-59) */
unsigned char hsecond; /* seconds/ 100 (0-99)*/
}
_dosdate_t type definition:
struct _dosdate_t
{
unsigned char day; /* day of month( 1-31) */
unsigned char month; /* month (1-12) */
unsigned int year; /* year (1980-2099) */
unsigned char dayofweek; /* day of week (0 = Sunday) */
}
WINDOWPLACEMENT16 type definition (according to WINE source code):
typedef struct
{
UINT16 length;
UINT16 flags;
UINT16 showCmd;
POINT16 ptMinPosition;
POINT16 ptMaxPosition;
RECT16 rcNormalPosition;
} WINDOWPLACEMENT16,*LPNONCLIENTMETRICS16;
"""
max_string_len = '32s' # maximal length of variable length strings in the file
# WARNING: I don't know what is the real value here. According to [1] p 139
# it seems that it could be 20. Some tests would be needed to check this.
# WARNING: A cleaner way to handle strings reading is suitable. Currently I
# read a buffer of max_string_len bytes and look for the C "end of string"
# character ('\x00'). It would be better either to read characters until
# reaching '\x00' or to read the exact number of characters needed, if the
# length of a string can be deduced from the lentgh of the block and the number
# of bytes already read (it seems possible, at least for certain block types).
# WARNING: Some test files contains data blocks of type 'b' and they are not
# described in the documentation.
# The name of the keys in the folowing dicts are chosen to match as closely as
# possible the names in document [1]
TypeH_Header = [
('m_nextBlock','l'),
('m_version','h'),
('m_time_hour', 'B'),
('m_time_minute', 'B'),
('m_time_second', 'B'),
('m_time_hsecond', 'B'),
('m_date_day', 'B'),
('m_date_month', 'B'),
('m_date_year', 'H'),
('m_date_dayofweek', 'B'),
('blank', 'x'), # one byte blank because of the 2 bytes alignement
('m_MinimumTime','d'),
('m_MaximumTime','d')]
Type0_SetBoards = [
('m_nextBlock','l'),
('m_BoardCount','h'),
('m_GroupCount','h'),
('m_placeMainWindow','x')] # WARNING: unknown type ('x' is wrong)
Type1_Boards = [ # WARNING: needs to be checked
('m_nextBlock','l'),
('m_Number','h'),
('m_countChannel','h'),
('m_countAnIn','h'),
('m_countAnOut','h'),
('m_countDigIn','h'),
('m_countDigOut','h'),
('m_TrigCount', 'h'), # not defined in 5.3.3 but appears in 5.5.1 and
# seems to really exist in files
# WARNING: check why 'm_TrigCount is not in the C code [2]
('m_Amplitude','f'),
('m_cSampleRate','f'), # sample rate seems to be given in kHz
('m_Duration','f'),
('m_nPreTrigmSec','f'),
('m_nPostTrigmSec','f'),
('m_TrgMode','h'),
('m_LevelValue','h'), # after this line, 5.3.3 is wrong,
# check example in 5.5.1 for the right fields
# WARNING: check why the following part is not corrected in the C code [2]
('m_nSamples','h'),
('m_fRMS','f'),
('m_ScaleFactor','f'),
('m_DapTime','f'),
('m_nameBoard', max_string_len)]
#('m_DiscMaxValue','h'), # WARNING: should this exist?
#('m_DiscMinValue','h') # WARNING: should this exist?
Type2_DefBlocksChannels = [
# common parameters for all types of channels
('m_nextBlock','l'),
('m_isAnalog','h'),
('m_isInput','h'),
('m_numChannel','h'),
('m_numColor','h'),
('m_Mode','h')]
Type2_SubBlockContinuousChannels = [
# continuous channels parameters
('blank', '2x'), # WARNING: this is not in the specs but it seems needed
('m_Amplitude','f'),
('m_SampleRate','f'),
('m_ContBlkSize','h'),
('m_ModeSpike','h'), # WARNING: the C code [2] uses usigned short here
('m_Duration','f'),
('m_bAutoScale','h'),
('m_Name', max_string_len)]
Type2_SubBlockLevelChannels = [ # WARNING: untested
# level channels parameters
('m_Amplitude','f'),
('m_SampleRate','f'),
('m_nSpikeCount','h'),
('m_ModeSpike','h'),
('m_nPreTrigmSec','f'),
('m_nPostTrigmSec','f'),
('m_LevelValue','h'),
('m_TrgMode','h'),
('m_YesRms','h'),
('m_bAutoScale','h'),
('m_Name', max_string_len)]
Type2_SubBlockExtTriggerChannels = [ # WARNING: untested
# external trigger channels parameters
('m_Amplitude','f'),
('m_SampleRate','f'),
('m_nSpikeCount','h'),
('m_ModeSpike','h'),
('m_nPreTrigmSec','f'),
('m_nPostTrigmSec','f'),
('m_TriggerNumber','h'),
('m_Name', max_string_len)]
Type2_SubBlockDigitalChannels = [
# digital channels parameters
('m_SampleRate','f'),
('m_SaveTrigger','h'),
('m_Duration','f'),
('m_PreviousStatus','h'), # WARNING: check difference with C code here
('m_Name', max_string_len)]
Type2_SubBlockUnknownChannels = [
# WARNING: We have a mode that doesn't appear in our spec, so we don't
# know what are the fields.
# It seems that for non-digital channels the beginning is
# similar to continuous channels. Let's hope we're right...
('blank', '2x'),
('m_Amplitude','f'),
('m_SampleRate','f')]
# there are probably other fields after...
Type6_DefBlockTrigger = [ # WARNING: untested
('m_nextBlock','l'),
('m_Number','h'),
('m_countChannel','h'),
('m_StateChannels','i'),
('m_numChannel1','h'),
('m_numChannel2','h'),
('m_numChannel3','h'),
('m_numChannel4','h'),
('m_numChannel5','h'),
('m_numChannel6','h'),
('m_numChannel7','h'),
('m_numChannel8','h'),
('m_Name','c')]
Type3_DefBlockGroup = [ # WARNING: untested
('m_nextBlock','l'),
('m_Number','h'),
('m_Z_Order','h'),
('m_countSubGroups','h'),
('m_placeGroupWindow','x'), # WARNING: unknown type ('x' is wrong)
('m_NetLoc','h'),
('m_locatMax','x'), # WARNING: unknown type ('x' is wrong)
('m_nameGroup','c')]
Type4_DefBlockSubgroup = [ # WARNING: untested
('m_nextBlock','l'),
('m_Number','h'),
('m_TypeOverlap','h'),
('m_Z_Order','h'),
('m_countChannel','h'),
('m_NetLoc','h'),
('m_location','x'), # WARNING: unknown type ('x' is wrong)
('m_bIsMaximized','h'),
('m_numChannel1','h'),
('m_numChannel2','h'),
('m_numChannel3','h'),
('m_numChannel4','h'),
('m_numChannel5','h'),
('m_numChannel6','h'),
('m_numChannel7','h'),
('m_numChannel8','h'),
('m_Name','c')]
Type5_DataBlockOneChannel = [
('m_numChannel','h')]
# WARNING: 'm_numChannel' (called 'm_Number' in 5.4.1 of [1]) is supposed
# to be uint according to 5.4.1 but it seems to be a short in the files
# (or should it be ushort ?)
# WARNING: In 5.1.1 page 121 of [1], they say "Note: 5 is used for demo
# purposes, 7 is used for real data", but looking at some real datafiles,
# it seems that block of type 5 are also used for real data...
Type7_DataBlockMultipleChannels = [ # WARNING: unfinished
('m_lenHead', 'h'), # WARNING: unknown true type
('FINT','h')]
# WARNING: there should be data after...
TypeP_DefBlockPeriStimHist = [ # WARNING: untested
('m_Number_Chan','h'),
('m_Position','x'), # WARNING: unknown type ('x' is wrong)
('m_isStatVisible','h'),
('m_DurationSec','f'),
('m_Rows','i'),
('m_DurationSecPre','f'),
('m_Bins','i'),
('m_NoTrigger','h')]
TypeF_DefBlockFRTachogram = [ # WARNING: untested
('m_Number_Chan','h'),
('m_Position','x'), # WARNING: unknown type ('x' is wrong)
('m_isStatVisible','h'),
('m_DurationSec','f'),
('m_AutoManualScale','i'),
('m_Max','i')]
TypeR_DefBlockRaster = [ # WARNING: untested
('m_Number_Chan','h'),
('m_Position','x'), # WARNING: unknown type ('x' is wrong)
('m_isStatVisible','h'),
('m_DurationSec','f'),
('m_Rows','i'),
('m_NoTrigger','h')]
TypeI_DefBlockISIHist = [ # WARNING: untested
('m_Number_Chan','h'),
('m_Position','x'), # WARNING: unknown type ('x' is wrong)
('m_isStatVisible','h'),
('m_DurationSec','f'),
('m_Bins','i'),
('m_TypeScale','i')]
Type8_MarkerBlock = [ # WARNING: untested
('m_Number_Channel','h'),
('m_Time','l')] # WARNING: check what's the right type here.
# It seems that the size of time_t type depends on the system typedef,
# I put long here but I couldn't check if it is the right type
Type9_ScaleBlock = [ # WARNING: untested
('m_Number_Channel','h'),
('m_Scale','f')]
Type_Unknown = []
dict_header_type = {
'h' : TypeH_Header,
'0' : Type0_SetBoards,
'1' : Type1_Boards,
'2' : Type2_DefBlocksChannels,
'6' : Type6_DefBlockTrigger,
'3' : Type3_DefBlockGroup,
'4' : Type4_DefBlockSubgroup,
'5' : Type5_DataBlockOneChannel,
'7' : Type7_DataBlockMultipleChannels,
'P' : TypeP_DefBlockPeriStimHist,
'F' : TypeF_DefBlockFRTachogram,
'R' : TypeR_DefBlockRaster,
'I' : TypeI_DefBlockISIHist,
'8' : Type8_MarkerBlock,
'9' : Type9_ScaleBlock
}
class HeaderReader():
def __init__(self,fid ,description ):
self.fid = fid
self.description = description
def read_f(self, offset =None):
if offset is not None :
self.fid.seek(offset)
d = { }
for key, fmt in self.description :
fmt = '<' + fmt # insures use of standard sizes
buf = self.fid.read(struct.calcsize(fmt))
if len(buf) != struct.calcsize(fmt) : return None
val = list(struct.unpack(fmt , buf))
for i, ival in enumerate(val):
if hasattr(ival, 'split'):
val[i] = ival.split('\x00', 1)[0]
if len(val) == 1:
val = val[0]
d[key] = val
return d
|