/usr/share/pyshared/neo/test/test_base.py is in python-neo 0.3.3-1.
This file is owned by root:root, with mode 0o644.
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"""
Tests of the neo.core.baseneo.BaseNeo class and related functions
"""
from datetime import datetime, date, time, timedelta
from decimal import Decimal
from fractions import Fraction
import sys
try:
import unittest2 as unittest
except ImportError:
import unittest
import numpy as np
import quantities as pq
from neo.core.baseneo import (BaseNeo, _check_annotations,
merge_annotation, merge_annotations)
from neo.test.tools import assert_arrays_equal
if sys.version_info[0] >= 3:
_bytes = bytes
long = int
def bytes(s):
return _bytes(s, encoding='ascii')
class Test_check_annotations(unittest.TestCase):
'''
TestCase to make sure _check_annotations works
'''
def setUp(self):
self.values = [1, 2.2, 3 + 2j,
'test', r'test', b'test',
None,
datetime(year=2008, month=12, day=3, hour=10, minute=4),
timedelta(weeks=2, days=7, hours=18, minutes=28,
seconds=18, milliseconds=28, microseconds=45),
time(hour=10, minute=4),
Decimal("3.14"), Fraction(13, 21),
np.array([1.1, 1.2, 1.3]),
np.array([1, 2, 3]),
np.array('test', dtype='S'),
np.array([True, False])]
def test__check_annotations__invalid_ValueError(self):
value = set([])
self.assertRaises(ValueError, _check_annotations, value)
def test__check_annotations__invalid_dtype_ValueError(self):
value = np.array([], dtype='O')
self.assertRaises(ValueError, _check_annotations, value)
def test__check_annotations__valid_dtypes(self):
for value in self.values:
_check_annotations(value)
def test__check_annotations__list(self):
_check_annotations(self.values)
def test__check_annotations__tuple(self):
_check_annotations(tuple(self.values))
_check_annotations((self.values, self.values))
def test__check_annotations__dict(self):
names = ['value%s' % i for i in range(len(self.values))]
values = dict(zip(names, self.values))
_check_annotations(values)
class Test_merge_annotation_annotations(unittest.TestCase):
'''
TestCase to make sure merge_annotation and merge_annotations work
'''
def test_merge_annotation__different_type_AssertionError(self):
value1 = 'test'
value2 = 5.5
self.assertRaises(AssertionError, merge_annotation, value1, value2)
def test_merge_annotation__unmergable_unequal_AssertionError(self):
value1 = 5.6
value2 = 5.5
self.assertRaises(AssertionError, merge_annotation, value1, value2)
def test_merge_annotation__str_unequal(self):
value1 = 'test1'
value2 = 'test2'
targ = 'test1;test2'
res = merge_annotation(value1, value2)
self.assertEqual(targ, res)
def test_merge_annotation__str_equal(self):
value1 = 'test1'
value2 = 'test1'
targ = 'test1'
res = merge_annotation(value1, value2)
self.assertEqual(targ, res)
def test_merge_annotation__ndarray(self):
value1 = np.array([1, 2, 3])
value2 = np.array([4, 5])
targ = np.array([1, 2, 3, 4, 5])
res = merge_annotation(value1, value2)
assert_arrays_equal(targ, res)
def test_merge_annotation__float_equal(self):
value1 = 5.5
value2 = 5.5
targ = 5.5
res = merge_annotation(value1, value2)
self.assertEqual(targ, res)
def test_merge_annotation__dict(self):
value1 = {'val1': 1, 'val2': 2.2, 'val3': 'test1'}
value2 = {'val2': 2.2, 'val3': 'test2', 'val4': [4, 4.4], 'val5': True}
targ = {'val1': 1, 'val2': 2.2, 'val3': 'test1;test2',
'val4': [4, 4.4], 'val5': True}
res = merge_annotation(value1, value2)
self.assertEqual(targ, res)
def test_merge_annotations__dict(self):
value1 = {'val1': 1, 'val2': 2.2, 'val3': 'test1'}
value2 = {'val2': 2.2, 'val3': 'test2', 'val4': [4, 4.4], 'val5': True}
targ = {'val1': 1, 'val2': 2.2, 'val3': 'test1;test2',
'val4': [4, 4.4], 'val5': True}
res = merge_annotations(value1, value2)
self.assertEqual(targ, res)
def test_merge_annotations__different_type_AssertionError(self):
value1 = {'val1': 1, 'val2': 2.2, 'val3': 'tester'}
value2 = {'val3': False, 'val4': [4, 4.4], 'val5': True}
self.assertRaises(AssertionError, merge_annotations, value1, value2)
def test_merge_annotations__unmergable_unequal_AssertionError(self):
value1 = {'val1': 1, 'val2': 2.2, 'val3': True}
value2 = {'val3': False, 'val4': [4, 4.4], 'val5': True}
self.assertRaises(AssertionError, merge_annotation, value1, value2)
class TestBaseNeo(unittest.TestCase):
'''
TestCase to make sure basic initialization and methods work
'''
def test_init(self):
'''test to make sure initialization works properly'''
base = BaseNeo(name='a base', description='this is a test')
self.assertEqual(base.name, 'a base')
self.assertEqual(base.description, 'this is a test')
self.assertEqual(base.file_origin, None)
def test_annotate(self):
'''test to make sure annotation works properly'''
base = BaseNeo()
base.annotate(test1=1, test2=1)
result1 = {'test1': 1, 'test2': 1}
self.assertDictEqual(result1, base.annotations)
base.annotate(test3=2, test4=3)
result2 = {'test3': 2, 'test4': 3}
result2a = dict(list(result1.items()) + list(result2.items()))
self.assertDictContainsSubset(result1, base.annotations)
self.assertDictContainsSubset(result2, base.annotations)
self.assertDictEqual(result2a, base.annotations)
base.annotate(test1=5, test2=8)
result3 = {'test1': 5, 'test2': 8}
result3a = dict(list(result3.items()) + list(result2.items()))
self.assertDictContainsSubset(result2, base.annotations)
self.assertDictContainsSubset(result3, base.annotations)
self.assertDictEqual(result3a, base.annotations)
self.assertNotEqual(base.annotations['test1'], result1['test1'])
self.assertNotEqual(base.annotations['test2'], result1['test2'])
class TestBaseNeoCoreTypes(unittest.TestCase):
'''
TestCase to make sure annotations are properly checked for core built-in
python data types
'''
def setUp(self):
'''create the instance to be tested, called before every test'''
self.base = BaseNeo()
def test_python_nonetype(self):
'''test to make sure None type data is accepted'''
value = None
self.base.annotate(data=value)
result = {'data': value}
self.assertEqual(value, self.base.annotations['data'])
self.assertDictEqual(result, self.base.annotations)
def test_python_int(self):
'''test to make sure int type data is accepted'''
value = 10
self.base.annotate(data=value)
result = {'data': value}
self.assertEqual(value, self.base.annotations['data'])
self.assertDictEqual(result, self.base.annotations)
def test_python_long(self):
'''test to make sure long type data is accepted'''
value = long(7)
self.base.annotate(data=value)
result = {'data': value}
self.assertEqual(value, self.base.annotations['data'])
self.assertDictEqual(result, self.base.annotations)
def test_python_float(self):
'''test to make sure float type data is accepted'''
value = 9.2
self.base.annotate(data=value)
result = {'data': value}
self.assertEqual(value, self.base.annotations['data'])
self.assertDictEqual(result, self.base.annotations)
def test_python_complex(self):
'''test to make sure complex type data is accepted'''
value = complex(23.17, 11.29)
self.base.annotate(data=value)
result = {'data': value}
self.assertEqual(value, self.base.annotations['data'])
self.assertDictEqual(result, self.base.annotations)
def test_python_string(self):
'''test to make sure string type data is accepted'''
value = 'this is a test'
self.base.annotate(data=value)
result = {'data': value}
self.assertEqual(value, self.base.annotations['data'])
self.assertDictEqual(result, self.base.annotations)
def test_python_unicode(self):
'''test to make sure unicode type data is accepted'''
value = u'this is also a test'
self.base.annotate(data=value)
result = {'data': value}
self.assertEqual(value, self.base.annotations['data'])
self.assertDictEqual(result, self.base.annotations)
def test_python_bytes(self):
'''test to make sure bytes type data is accepted'''
value = bytes('1,2,3,4,5')
self.base.annotate(data=value)
result = {'data': value}
self.assertEqual(value, self.base.annotations['data'])
self.assertDictEqual(result, self.base.annotations)
class TestBaseNeoStandardLibraryTypes(unittest.TestCase):
'''
TestCase to make sure annotations are properly checked for data types from
the python standard library that are not core built-in data types
'''
def setUp(self):
'''create the instance to be tested, called before every test'''
self.base = BaseNeo()
def test_python_fraction(self):
'''test to make sure Fraction type data is accepted'''
value = Fraction(13, 21)
self.base.annotate(data=value)
result = {'data': value}
self.assertEqual(value, self.base.annotations['data'])
self.assertDictEqual(result, self.base.annotations)
def test_python_decimal(self):
'''test to make sure Decimal type data is accepted'''
value = Decimal("3.14")
self.base.annotate(data=value)
result = {'data': value}
self.assertEqual(value, self.base.annotations['data'])
self.assertDictEqual(result, self.base.annotations)
def test_python_datetime(self):
'''test to make sure datetime type data is accepted'''
value = datetime(year=2008, month=12, day=3, hour=10, minute=4)
self.base.annotate(data=value)
result = {'data': value}
self.assertEqual(value, self.base.annotations['data'])
self.assertDictEqual(result, self.base.annotations)
def test_python_date(self):
'''test to make sure date type data is accepted'''
value = date(year=2008, month=12, day=3)
self.base.annotate(data=value)
result = {'data': value}
self.assertEqual(value, self.base.annotations['data'])
self.assertDictEqual(result, self.base.annotations)
def test_python_time(self):
'''test to make sure time type data is accepted'''
value = time(hour=10, minute=4)
self.base.annotate(data=value)
result = {'data': value}
self.assertEqual(value, self.base.annotations['data'])
self.assertDictEqual(result, self.base.annotations)
def test_python_timedelta(self):
'''test to make sure timedelta type data is accepted'''
value = timedelta(weeks=2, days=7, hours=18, minutes=28,
seconds=18, milliseconds=28,
microseconds=45)
self.base.annotate(data=value)
result = {'data': value}
self.assertEqual(value, self.base.annotations['data'])
self.assertDictEqual(result, self.base.annotations)
class TestBaseNeoContainerTypes(unittest.TestCase):
'''
TestCase to make sure annotations are properly checked for data type
inside python built-in container types
'''
def setUp(self):
'''create the instance to be tested, called before every test'''
self.base = BaseNeo()
def test_python_list(self):
'''test to make sure list type data is accepted'''
value = [None, 10, 9.2, complex(23, 11),
['this is a test', bytes('1,2,3,4,5')],
[Fraction(13, 21), Decimal("3.14")]]
self.base.annotate(data=value)
result = {'data': value}
self.assertListEqual(value, self.base.annotations['data'])
self.assertDictEqual(result, self.base.annotations)
def test_python_tuple(self):
'''test to make sure tuple type data is accepted'''
value = (None, 10, 9.2, complex(23, 11),
('this is a test', bytes('1,2,3,4,5')),
(Fraction(13, 21), Decimal("3.14")))
self.base.annotate(data=value)
result = {'data': value}
self.assertTupleEqual(value, self.base.annotations['data'])
self.assertDictEqual(result, self.base.annotations)
def test_python_dict(self):
'''test to make sure dict type data is accepted'''
value = {'NoneType': None, 'int': 10, 'float': 9.2,
'complex': complex(23, 11),
'dict1': {'string': 'this is a test',
'bytes': bytes('1,2,3,4,5')},
'dict2': {'Fraction': Fraction(13, 21),
'Decimal': Decimal("3.14")}}
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_python_set(self):
'''test to make sure set type data is rejected'''
value = set([None, 10, 9.2, complex(23, 11)])
self.assertRaises(ValueError, self.base.annotate, data=value)
def test_python_frozenset(self):
'''test to make sure frozenset type data is rejected'''
value = frozenset([None, 10, 9.2, complex(23, 11)])
self.assertRaises(ValueError, self.base.annotate, data=value)
def test_python_iter(self):
'''test to make sure iter type data is rejected'''
value = iter([None, 10, 9.2, complex(23, 11)])
self.assertRaises(ValueError, self.base.annotate, data=value)
class TestBaseNeoNumpyArrayTypes(unittest.TestCase):
'''
TestCase to make sure annotations are properly checked for numpy arrays
'''
def setUp(self):
'''create the instance to be tested, called before every test'''
self.base = BaseNeo()
def test_numpy_array_int(self):
'''test to make sure int type numpy arrays are accepted'''
value = np.array([1, 2, 3, 4, 5], dtype=np.int)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_array_uint(self):
'''test to make sure uint type numpy arrays are accepted'''
value = np.array([1, 2, 3, 4, 5], dtype=np.uint)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_array_int0(self):
'''test to make sure int0 type numpy arrays are accepted'''
value = np.array([1, 2, 3, 4, 5], dtype=np.int0)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_array_uint0(self):
'''test to make sure uint0 type numpy arrays are accepted'''
value = np.array([1, 2, 3, 4, 5], dtype=np.uint0)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_array_int8(self):
'''test to make sure int8 type numpy arrays are accepted'''
value = np.array([1, 2, 3, 4, 5], dtype=np.int8)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_array_uint8(self):
'''test to make sure uint8 type numpy arrays are accepted'''
value = np.array([1, 2, 3, 4, 5], dtype=np.uint8)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_array_int16(self):
'''test to make sure int16 type numpy arrays are accepted'''
value = np.array([1, 2, 3, 4, 5], dtype=np.int16)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_array_uint16(self):
'''test to make sure uint16 type numpy arrays are accepted'''
value = np.array([1, 2, 3, 4, 5], dtype=np.uint16)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_array_int32(self):
'''test to make sure int32 type numpy arrays are accepted'''
value = np.array([1, 2, 3, 4, 5], dtype=np.int32)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_array_uint32(self):
'''test to make sure uint32 type numpy arrays are accepted'''
value = np.array([1, 2, 3, 4, 5], dtype=np.uint32)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_array_int64(self):
'''test to make sure int64 type numpy arrays are accepted'''
value = np.array([1, 2, 3, 4, 5], dtype=np.int64)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_array_uint64(self):
'''test to make sure uint64 type numpy arrays are accepted'''
value = np.array([1, 2, 3, 4, 5], dtype=np.uint64)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_array_float(self):
'''test to make sure float type numpy arrays are accepted'''
value = np.array([1, 2, 3, 4, 5], dtype=np.float)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_array_floating(self):
'''test to make sure floating type numpy arrays are accepted'''
value = np.array([1, 2, 3, 4, 5], dtype=np.floating)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_array_double(self):
'''test to make sure double type numpy arrays are accepted'''
value = np.array([1, 2, 3, 4, 5], dtype=np.double)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_array_float16(self):
'''test to make sure float16 type numpy arrays are accepted'''
value = np.array([1, 2, 3, 4, 5], dtype=np.float16)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_array_float32(self):
'''test to make sure float32 type numpy arrays are accepted'''
value = np.array([1, 2, 3, 4, 5], dtype=np.float32)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_array_float64(self):
'''test to make sure float64 type numpy arrays are accepted'''
value = np.array([1, 2, 3, 4, 5], dtype=np.float64)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
@unittest.skipUnless(hasattr(np, "float128"), "float128 not available")
def test_numpy_array_float128(self):
'''test to make sure float128 type numpy arrays are accepted'''
value = np.array([1, 2, 3, 4, 5], dtype=np.float128)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_array_complex(self):
'''test to make sure complex type numpy arrays are accepted'''
value = np.array([1, 2, 3, 4, 5], dtype=np.complex)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_scalar_complex64(self):
'''test to make sure complex64 type numpy arrays are accepted'''
value = np.array([1, 2, 3, 4, 5], dtype=np.complex64)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_scalar_complex128(self):
'''test to make sure complex128 type numpy arrays are accepted'''
value = np.array([1, 2, 3, 4, 5], dtype=np.complex128)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
@unittest.skipUnless(hasattr(np, "complex256"),
"complex256 not available")
def test_numpy_scalar_complex256(self):
'''test to make sure complex256 type numpy arrays are accepted'''
value = np.array([1, 2, 3, 4, 5], dtype=np.complex256)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_array_bool(self):
'''test to make sure bool type numpy arrays are accepted'''
value = np.array([1, 2, 3, 4, 5], dtype=np.bool)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_array_str(self):
'''test to make sure str type numpy arrays are accepted'''
value = np.array([1, 2, 3, 4, 5], dtype=np.str)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_array_string0(self):
'''test to make sure string0 type numpy arrays are accepted'''
if sys.version_info[0] >= 3:
dtype = np.str0
else:
dtype = np.string0
value = np.array([1, 2, 3, 4, 5], dtype=dtype)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
class TestBaseNeoNumpyScalarTypes(unittest.TestCase):
'''
TestCase to make sure annotations are properly checked for numpy scalars
'''
def setUp(self):
'''create the instance to be tested, called before every test'''
self.base = BaseNeo()
def test_numpy_scalar_int(self):
'''test to make sure int type numpy scalars are accepted'''
value = np.array(99, dtype=np.int)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_scalar_uint(self):
'''test to make sure uint type numpy scalars are accepted'''
value = np.array(99, dtype=np.uint)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_scalar_int0(self):
'''test to make sure int0 type numpy scalars are accepted'''
value = np.array(99, dtype=np.int0)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_scalar_uint0(self):
'''test to make sure uint0 type numpy scalars are accepted'''
value = np.array(99, dtype=np.uint0)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_scalar_int8(self):
'''test to make sure int8 type numpy scalars are accepted'''
value = np.array(99, dtype=np.int8)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_scalar_uint8(self):
'''test to make sure uint8 type numpy scalars are accepted'''
value = np.array(99, dtype=np.uint8)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_scalar_int16(self):
'''test to make sure int16 type numpy scalars are accepted'''
value = np.array(99, dtype=np.int16)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_scalar_uint16(self):
'''test to make sure uint16 type numpy scalars are accepted'''
value = np.array(99, dtype=np.uint16)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_scalar_int32(self):
'''test to make sure int32 type numpy scalars are accepted'''
value = np.array(99, dtype=np.int32)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_scalar_uint32(self):
'''test to make sure uint32 type numpy scalars are accepted'''
value = np.array(99, dtype=np.uint32)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_scalar_int64(self):
'''test to make sure int64 type numpy scalars are accepted'''
value = np.array(99, dtype=np.int64)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_scalar_uint64(self):
'''test to make sure uint64 type numpy scalars are accepted'''
value = np.array(99, dtype=np.uint64)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_scalar_float(self):
'''test to make sure float type numpy scalars are accepted'''
value = np.array(99, dtype=np.float)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_scalar_floating(self):
'''test to make sure floating type numpy scalars are accepted'''
value = np.array(99, dtype=np.floating)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_scalar_double(self):
'''test to make sure double type numpy scalars are accepted'''
value = np.array(99, dtype=np.double)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_scalar_float16(self):
'''test to make sure float16 type numpy scalars are accepted'''
value = np.array(99, dtype=np.float16)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_scalar_float32(self):
'''test to make sure float32 type numpy scalars are accepted'''
value = np.array(99, dtype=np.float32)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_scalar_float64(self):
'''test to make sure float64 type numpy scalars are accepted'''
value = np.array(99, dtype=np.float64)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
@unittest.skipUnless(hasattr(np, "float128"), "float128 not available")
def test_numpy_scalar_float128(self):
'''test to make sure float128 type numpy scalars are accepted'''
value = np.array(99, dtype=np.float128)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_scalar_complex(self):
'''test to make sure complex type numpy scalars are accepted'''
value = np.array(99, dtype=np.complex)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_scalar_complex64(self):
'''test to make sure complex64 type numpy scalars are accepted'''
value = np.array(99, dtype=np.complex64)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_scalar_complex128(self):
'''test to make sure complex128 type numpy scalars are accepted'''
value = np.array(99, dtype=np.complex128)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
@unittest.skipUnless(hasattr(np, "complex256"), "complex256 not available")
def test_numpy_scalar_complex256(self):
'''test to make sure complex256 type numpy scalars are accepted'''
value = np.array(99, dtype=np.complex256)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_scalar_bool(self):
'''test to make sure bool type numpy scalars are rejected'''
value = np.array(99, dtype=np.bool)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_array_str(self):
'''test to make sure str type numpy scalars are accepted'''
value = np.array(99, dtype=np.str)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_numpy_scalar_string0(self):
'''test to make sure string0 type numpy scalars are rejected'''
if sys.version_info[0] >= 3:
dtype = np.str0
else:
dtype = np.string0
value = np.array(99, dtype=dtype)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
class TestBaseNeoQuantitiesArrayTypes(unittest.TestCase):
'''
TestCase to make sure annotations are properly checked for quantities
arrays
'''
def setUp(self):
'''create the instance to be tested, called before every test'''
self.base = BaseNeo()
def test_quantities_array_int(self):
'''test to make sure int type quantites arrays are accepted'''
value = pq.Quantity([1, 2, 3, 4, 5], dtype=np.int, units=pq.s)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_quantities_array_uint(self):
'''test to make sure uint type quantites arrays are accepted'''
value = pq.Quantity([1, 2, 3, 4, 5], dtype=np.uint, units=pq.meter)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_quantities_array_float(self):
'''test to make sure float type quantites arrays are accepted'''
value = [1, 2, 3, 4, 5] * pq.kg
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_quantities_array_str(self):
'''test to make sure str type quantites arrays are accepted'''
value = pq.Quantity([1, 2, 3, 4, 5], dtype=np.str, units=pq.meter)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
class TestBaseNeoQuantitiesScalarTypes(unittest.TestCase):
'''
TestCase to make sure annotations are properly checked for quantities
scalars
'''
def setUp(self):
'''create the instance to be tested, called before every test'''
self.base = BaseNeo()
def test_quantities_scalar_int(self):
'''test to make sure int type quantites scalars are accepted'''
value = pq.Quantity(99, dtype=np.int, units=pq.s)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_quantities_scalar_uint(self):
'''test to make sure uint type quantites scalars are accepted'''
value = pq.Quantity(99, dtype=np.uint, units=pq.meter)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_quantities_scalar_float(self):
'''test to make sure float type quantites scalars are accepted'''
value = 99 * pq.kg
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
def test_quantities_scalar_str(self):
'''test to make sure str type quantites scalars are accepted'''
value = pq.Quantity(99, dtype=np.str, units=pq.meter)
self.base.annotate(data=value)
result = {'data': value}
self.assertDictEqual(result, self.base.annotations)
class TestBaseNeoUserDefinedTypes(unittest.TestCase):
'''
TestCase to make sure annotations are properly checked for arbitrary
objects
'''
def setUp(self):
'''create the instance to be tested, called before every test'''
self.base = BaseNeo()
def test_my_class(self):
'''test to make sure user defined class type data is rejected'''
class Foo(object):
pass
value = Foo()
self.assertRaises(ValueError, self.base.annotate, data=value)
def test_my_class_list(self):
'''test to make sure user defined class type data is rejected'''
class Foo(object):
pass
value = [Foo(), Foo(), Foo()]
self.assertRaises(ValueError, self.base.annotate, data=value)
if __name__ == "__main__":
unittest.main()
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