This file is indexed.

/usr/lib/R/site-library/AnnotationDbi/DBschemas/schemas_2.1/FLYCHIP_DB.sql is in r-bioc-annotationdbi 1.26.1-1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
13
14
15
16
17
18
19
20
21
CREATE TABLE metadata (name VARCHAR(80) PRIMARY KEY, value VARCHAR(255) );
CREATE TABLE map_metadata (
      map_name VARCHAR(80) NOT NULL,
      source_name VARCHAR(80) NOT NULL,
      source_url VARCHAR(255) NOT NULL,
      source_date VARCHAR(20) NOT NULL
    );
CREATE TABLE map_counts (
      map_name VARCHAR(80) PRIMARY KEY,
      count INTEGER NOT NULL
    );
CREATE TABLE sqlite_stat1(tbl,idx,stat);
CREATE TABLE accessions (probe_id VARCHAR(80),accession VARCHAR(20));
CREATE TABLE probes (probe_id VARCHAR(80), gene_id VARCHAR(10) NULL, is_multiple SMALLINT NOT NULL);

-- Explicit index creation on the referencing column of all the foreign keys.
-- Note that this is only needed for SQLite: PostgreSQL and MySQL create those
-- indexes automatically.
CREATE INDEX Fgbprobes ON accessions (probe_id);
CREATE INDEX Fprobes ON probes (probe_id);
CREATE INDEX Fgenes ON probes (gene_id);