r-bioc-annotationdbi 1.26.1-1 / usr / lib / R / site-library / AnnotationDbi / help / AnIndex

$,Bimap-method	Bimap-envirAPI
ACCNUM	colsAndKeytypes
ACYRTHOSIPHON_PISUM	InparanoidColsAndKeytypes
AEDES_AEGYPTI	InparanoidColsAndKeytypes
AgiAnnDbMap	Bimap
AgiAnnDbMap-class	Bimap
ALIAS	colsAndKeytypes
AnnDbBimap	Bimap
AnnDbBimap-class	Bimap
AnnDbMap	Bimap
AnnDbMap-class	Bimap
AnnDbObj	AnnDbObj-class
AnnDbObj-class	AnnDbObj-class
AnnDbObj-objects	AnnDbObj-class
AnnDbPkg-checker	AnnDbPkg-checker
AnnObj	AnnotationDbi-internals
AnnObj-class	AnnotationDbi-internals
AnnotationDb	AnnotationDb-class
AnnotationDb-class	AnnotationDb-class
AnnotationDbi-defunct	defunct
AnnotationDbi-deprecated	deprecated
ANOPHELES_GAMBIAE	InparanoidColsAndKeytypes
APIS_MELLIFERA	InparanoidColsAndKeytypes
ARABIDOPSIS_THALIANA	InparanoidColsAndKeytypes
ARACYC	colsAndKeytypes
ARACYCENZYME	colsAndKeytypes
as.character,AnnDbBimap-method	BimapFormatting
as.character,FlatBimap-method	BimapFormatting
as.data.frame,Bimap-method	Bimap-toTable
as.list	BimapFormatting
as.list,AgiAnnDbMap-method	BimapFormatting
as.list,Bimap-method	BimapFormatting
as.list,FlatBimap-method	BimapFormatting
as.list,GoAnnDbBimap-method	BimapFormatting
as.list,GOTermsAnnDbBimap-method	BimapFormatting
as.list,IpiAnnDbMap-method	BimapFormatting
ASPERGILLUS_FUMIGATUS	InparanoidColsAndKeytypes
BATRACHOCHYTRIUM_DENDROBATIDIS	InparanoidColsAndKeytypes
Bimap	Bimap
Bimap-class	Bimap
Bimap-direction	Bimap-direction
Bimap-envirAPI	Bimap-envirAPI
Bimap-keys	Bimap-keys
Bimap-toTable	Bimap-toTable
BimapFormatting	BimapFormatting
BOMBYX_MORI	InparanoidColsAndKeytypes
BOS_TAURUS	InparanoidColsAndKeytypes
BRANCHIOSTOMA_FLORIDAE	InparanoidColsAndKeytypes
BRUGIA_MALAYI	InparanoidColsAndKeytypes
CAENORHABDITIS_BRENNERI	InparanoidColsAndKeytypes
CAENORHABDITIS_BRIGGSAE	InparanoidColsAndKeytypes
CAENORHABDITIS_ELEGANS	InparanoidColsAndKeytypes
CAENORHABDITIS_JAPONICA	InparanoidColsAndKeytypes
CAENORHABDITIS_REMANEI	InparanoidColsAndKeytypes
CANDIDA_ALBICANS	InparanoidColsAndKeytypes
CANDIDA_GLABRATA	InparanoidColsAndKeytypes
CANIS_FAMILIARIS	InparanoidColsAndKeytypes
CAPITELLA_SPI	InparanoidColsAndKeytypes
CAVIA_PORCELLUS	InparanoidColsAndKeytypes
checkMAPCOUNTS	AnnDbPkg-checker
ChipDb-class	AnnotationDb-class
CHLAMYDOMONAS_REINHARDTII	InparanoidColsAndKeytypes
CHR	colsAndKeytypes
CHRLOC	colsAndKeytypes
CHRLOCEND	colsAndKeytypes
CIONA_INTESTINALIS	InparanoidColsAndKeytypes
CIONA_SAVIGNYI	InparanoidColsAndKeytypes
class:AgiAnnDbMap	Bimap
class:AnnDbBimap	Bimap
class:AnnDbMap	Bimap
class:AnnDbObj	AnnDbObj-class
class:AnnObj	AnnotationDbi-internals
class:AnnotationDb	AnnotationDb-class
class:Bimap	Bimap
class:FlatBimap	AnnotationDbi-internals
class:Go3AnnDbBimap	Bimap
class:GOAllFrame	GOFrame
class:GoAnnDbBimap	Bimap
class:GOFrame	GOFrame
class:GOTerms	GOTerms-class
class:GOTermsAnnDbBimap	Bimap
class:IpiAnnDbMap	Bimap
class:KEGGFrame	KEGGFrame
class:L2Rlink	AnnotationDbi-internals
class:ProbeAnnDbBimap	Bimap
class:ProbeAnnDbMap	Bimap
class:ProbeGo3AnnDbBimap	Bimap
class:ProbeIpiAnnDbMap	Bimap
COCCIDIOIDES_IMMITIS	InparanoidColsAndKeytypes
colmetanames	Bimap-toTable
colmetanames,AnnDbBimap-method	Bimap-toTable
colmetanames,FlatBimap-method	Bimap-toTable
colnames	Bimap-toTable
colnames,AnnDbBimap-method	Bimap-toTable
colnames,FlatBimap-method	Bimap-toTable
cols	AnnotationDb-class
columns	AnnotationDb-class
columns,AnnotationDb-method	AnnotationDb-class
columns,ChipDb-method	AnnotationDb-class
columns,GODb-method	AnnotationDb-class
columns,Inparanoid8Db-method	AnnotationDb-class
columns,InparanoidDb-method	AnnotationDb-class
columns,OrgDb-method	AnnotationDb-class
columns,ReactomeDb-method	AnnotationDb-class
COMMON	colsAndKeytypes
contents,Bimap-method	Bimap-envirAPI
COPRINOPSIS_CINEREUS	InparanoidColsAndKeytypes
count.links	Bimap-toTable
count.links,Bimap-method	Bimap-toTable
count.links,Go3AnnDbBimap-method	Bimap-toTable
count.mappedkeys	Bimap-keys
count.mappedkeys,ANY-method	Bimap-keys
count.mappedkeys,Bimap-method	Bimap-keys
count.mappedLkeys	Bimap-direction
count.mappedLkeys,AgiAnnDbMap-method	Bimap-direction
count.mappedLkeys,AnnDbBimap-method	Bimap-direction
count.mappedLkeys,Bimap-method	Bimap-direction
count.mappedLkeys,Go3AnnDbBimap-method	Bimap-direction
count.mappedRkeys	Bimap-direction
count.mappedRkeys,AnnDbBimap-method	Bimap-direction
count.mappedRkeys,AnnDbMap-method	Bimap-direction
count.mappedRkeys,Bimap-method	Bimap-direction
count.mappedRkeys,Go3AnnDbBimap-method	Bimap-direction
createAnnObjs.SchemaChoice	AnnotationDbi-internals
CRYPTOCOCCUS_NEOFORMANS	InparanoidColsAndKeytypes
CRYPTOSPORIDIUM_HOMINIS	InparanoidColsAndKeytypes
CRYPTOSPORIDIUM_PARVUM	InparanoidColsAndKeytypes
CULEX_PIPIENS	InparanoidColsAndKeytypes
CYANIDIOSCHYZON_MEROLAE	InparanoidColsAndKeytypes
DANIO_RERIO	InparanoidColsAndKeytypes
DAPHNIA_PULEX	InparanoidColsAndKeytypes
dbconn	AnnDbObj-class
dbconn,AnnDbObj-method	AnnDbObj-class
dbConn,AnnotationDb-method	AnnotationDb-class
dbconn,environment-method	AnnDbObj-class
dbfile	AnnDbObj-class
dbfile,AnnDbObj-method	AnnDbObj-class
dbfile,environment-method	AnnDbObj-class
dbFileConnect	AnnotationDbi-internals
dbFileDisconnect	AnnotationDbi-internals
dbInfo	AnnDbObj-class
dbInfo,AnnDbObj-method	AnnDbObj-class
dbInfo,DBIConnection-method	AnnDbObj-class
dbInfo,environment-method	AnnDbObj-class
dbmeta	AnnDbObj-class
dbmeta,AnnDbObj-method	AnnDbObj-class
dbmeta,DBIConnection-method	AnnDbObj-class
dbmeta,environment-method	AnnDbObj-class
dbschema	AnnDbObj-class
dbschema,AnnDbObj-method	AnnDbObj-class
dbschema,DBIConnection-method	AnnDbObj-class
dbschema,environment-method	AnnDbObj-class
DEBARYOMYCES_HANSENII	InparanoidColsAndKeytypes
debugSQL	AnnotationDbi-internals
DEFINITION	GOColsAndKeytypes
Definition	GOTerms-class
Definition,character-method	GOTerms-class
Definition,GOTerms-method	GOTerms-class
Definition,GOTermsAnnDbBimap-method	GOTerms-class
DESCRIPTION	colsAndKeytypes
determineDefaultSeqnameStyle	deprecated
determineDefaultSeqnameStyle,TranscriptDb-method	deprecated
DICTYOSTELIUM_DISCOIDEUM	InparanoidColsAndKeytypes
dim,Bimap-method	Bimap-toTable
direction	Bimap-direction
direction,AnnDbBimap-method	Bimap-direction
direction,FlatBimap-method	Bimap-direction
direction<-	Bimap-direction
direction<-,AnnDbBimap-method	Bimap-direction
direction<-,AnnDbMap-method	Bimap-direction
direction<-,FlatBimap-method	Bimap-direction
DROSOPHILA_ANANASSAE	InparanoidColsAndKeytypes
DROSOPHILA_GRIMSHAWI	InparanoidColsAndKeytypes
DROSOPHILA_MELANOGASTER	InparanoidColsAndKeytypes
DROSOPHILA_MOJAVENSIS	InparanoidColsAndKeytypes
DROSOPHILA_PSEUDOOBSCURA	InparanoidColsAndKeytypes
DROSOPHILA_VIRILIS	InparanoidColsAndKeytypes
DROSOPHILA_WILLISTONI	InparanoidColsAndKeytypes
eapply	Bimap-envirAPI
eapply,Bimap-method	Bimap-envirAPI
ENSEMBL	colsAndKeytypes
ENSEMBLPROT	colsAndKeytypes
ENSEMBLTRANS	colsAndKeytypes
ENTAMOEBA_HISTOLYTICA	InparanoidColsAndKeytypes
ENTREZID	colsAndKeytypes
ENZYME	colsAndKeytypes
EQUUS_CABALLUS	InparanoidColsAndKeytypes
ESCHERICHIA_COLIK12	InparanoidColsAndKeytypes
EVIDENCE	colsAndKeytypes
EVIDENCEALL	colsAndKeytypes
exists	Bimap-envirAPI
exists,ANY,ANY,Bimap-method	Bimap-envirAPI
exists,ANY,Bimap,missing-method	Bimap-envirAPI
extractSeqnameSet	deprecated
findSequenceRenamingMaps	deprecated
FlatBimap	AnnotationDbi-internals
FlatBimap-class	AnnotationDbi-internals
FUSARIUM_GRAMINEARUM	InparanoidColsAndKeytypes
GALLUS_GALLUS	InparanoidColsAndKeytypes
GASTEROSTEUS_ACULEATUS	InparanoidColsAndKeytypes
GENENAME	colsAndKeytypes
get	Bimap-envirAPI
get,ANY,ANY,Bimap-method	Bimap-envirAPI
get,ANY,Bimap,missing-method	Bimap-envirAPI
getBimapFilters	BimapFiltering
getBimapFilters,AnnDbBimap-method	BimapFiltering
getGOFrameData	GOFrame
getGOFrameData,GOAllFrame-method	GOFrame
getGOFrameData,GOFrame-method	GOFrame
getKEGGFrameData	KEGGFrame
getKEGGFrameData,KEGGAllFrame-method	KEGGFrame
getKEGGFrameData,KEGGFrame-method	KEGGFrame
GIARDIA_LAMBLIA	InparanoidColsAndKeytypes
GO	colsAndKeytypes
Go3AnnDbBimap	Bimap
Go3AnnDbBimap-class	Bimap
GOALL	colsAndKeytypes
GOAllFrame	GOFrame
GOAllFrame,GOFrame-method	GOFrame
GOAllFrame-class	GOFrame
GoAnnDbBimap	Bimap
GoAnnDbBimap-class	Bimap
GODb-class	AnnotationDb-class
GOFrame	GOFrame
GOFrame,data.frame,character-method	GOFrame
GOFrame,data.frame,missing-method	GOFrame
GOFrame-class	GOFrame
GOID	GOColsAndKeytypes
GOID,character-method	GOTerms-class
GOID,GOTerms-method	GOTerms-class
GOID,GOTermsAnnDbBimap-method	GOTerms-class
GOTerms	GOTerms-class
GOTerms-class	GOTerms-class
GOTermsAnnDbBimap	Bimap
GOTermsAnnDbBimap-class	Bimap
hasMultiProbes	BimapFiltering
hasMultiProbes,ProbeAnnDbBimap-method	BimapFiltering
hasMultiProbes,ProbeAnnDbMap-method	BimapFiltering
hasMultiProbes,ProbeGo3AnnDbBimap-method	BimapFiltering
hasMultiProbes,ProbeIpiAnnDbMap-method	BimapFiltering
hasSingleProbes	BimapFiltering
hasSingleProbes,ProbeAnnDbBimap-method	BimapFiltering
hasSingleProbes,ProbeAnnDbMap-method	BimapFiltering
hasSingleProbes,ProbeGo3AnnDbBimap-method	BimapFiltering
hasSingleProbes,ProbeIpiAnnDbMap-method	BimapFiltering
head	Bimap-toTable
head,FlatBimap-method	Bimap-toTable
HELOBDELLA_ROBUSTA	InparanoidColsAndKeytypes
idConverter	inpIDMapper
initialize,FlatBimap-method	AnnotationDbi-internals
initialize,GOTerms-method	GOTerms-class
initialize,L2Rlink-method	AnnotationDbi-internals
InparanoidDb-class	AnnotationDb-class
inpIDMapper	inpIDMapper
INTERPRO	colsAndKeytypes
intraIDMapper	inpIDMapper
IPI	colsAndKeytypes
IpiAnnDbMap	Bimap
IpiAnnDbMap-class	Bimap
isNA	Bimap-keys
isNA,ANY-method	Bimap-keys
isNA,Bimap-method	Bimap-keys
isNA,environment-method	Bimap-keys
isSupportedSeqnamesStyle	deprecated
IXODES_SCAPULARIS	InparanoidColsAndKeytypes
KEGGFrame	KEGGFrame
KEGGFrame,data.frame,character-method	KEGGFrame
KEGGFrame,data.frame,missing-method	KEGGFrame
KEGGFrame-class	KEGGFrame
keyname	Bimap-toTable
keyname,Bimap-method	Bimap-toTable
keys	AnnotationDb-class
keys,Bimap-method	Bimap-keys
keys,ChipDb-method	AnnotationDb-class
keys,GODb-method	AnnotationDb-class
keys,Inparanoid8Db-method	AnnotationDb-class
keys,InparanoidDb-method	AnnotationDb-class
keys,OrgDb-method	AnnotationDb-class
keys,ReactomeDb-method	AnnotationDb-class
keys<-	Bimap-keys
keys<-,Bimap-method	Bimap-keys
keytypes	AnnotationDb-class
keytypes,ChipDb-method	AnnotationDb-class
keytypes,GODb-method	AnnotationDb-class
keytypes,Inparanoid8Db-method	AnnotationDb-class
keytypes,InparanoidDb-method	AnnotationDb-class
keytypes,OrgDb-method	AnnotationDb-class
keytypes,ReactomeDb-method	AnnotationDb-class
KLUYVEROMYCES_LACTIS	InparanoidColsAndKeytypes
L2Rlink	AnnotationDbi-internals
L2Rlink-class	AnnotationDbi-internals
LEISHMANIA_MAJOR	InparanoidColsAndKeytypes
length,Bimap-method	Bimap-keys
links	Bimap-toTable
links,AnnDbBimap-method	Bimap-toTable
links,Bimap-method	Bimap-toTable
links,FlatBimap-method	Bimap-toTable
links,Go3AnnDbBimap-method	Bimap-toTable
listAllSupportedSeqnameStyles	deprecated
listAllSupportedStylesBySpecies	deprecated
Lkeyname	Bimap-toTable
Lkeyname,AnnDbBimap-method	Bimap-toTable
Lkeyname,Bimap-method	Bimap-toTable
Lkeys	Bimap-direction
Lkeys,AnnDbBimap-method	Bimap-direction
Lkeys,FlatBimap-method	Bimap-direction
Lkeys,ProbeAnnDbBimap-method	Bimap-direction
Lkeys,ProbeAnnDbMap-method	Bimap-direction
Lkeys,ProbeGo3AnnDbBimap-method	Bimap-direction
Lkeys,ProbeIpiAnnDbMap-method	Bimap-direction
Lkeys<-	Bimap-direction
Lkeys<-,AnnDbBimap-method	Bimap-direction
Lkeys<-,FlatBimap-method	Bimap-direction
Llength	Bimap-direction
Llength,AnnDbBimap-method	Bimap-direction
Llength,Bimap-method	Bimap-direction
Llength,ProbeAnnDbBimap-method	Bimap-direction
Llength,ProbeAnnDbMap-method	Bimap-direction
Llength,ProbeGo3AnnDbBimap-method	Bimap-direction
Llength,ProbeIpiAnnDbMap-method	Bimap-direction
loadDb	AnnotationDb-class
loadDb,character,character,character-method	AnnotationDb-class
loadDb,character,missing,missing-method	AnnotationDb-class
LOTTIA_GIGANTEA	InparanoidColsAndKeytypes
ls	Bimap-envirAPI
ls,Bimap-method	Bimap-envirAPI
MACACA_MULATTA	InparanoidColsAndKeytypes
MAGNAPORTHE_GRISEA	InparanoidColsAndKeytypes
makeARABIDOPSISCHIP_DB	defunct
makeBOVINECHIP_DB	defunct
makeCANINECHIP_DB	defunct
makeCHICKENCHIP_DB	defunct
makeECOLICHIP_DB	defunct
makeFLYCHIP_DB	defunct
makeGOGraph	makeGOGraph
makeHUMANCHIP_DB	defunct
makeMOUSECHIP_DB	defunct
makePIGCHIP_DB	defunct
makeRATCHIP_DB	defunct
makeWORMCHIP_DB	defunct
makeYEASTCHIP_DB	defunct
makeZEBRAFISHCHIP_DB	defunct
make_eg_to_go_map	make_eg_to_go_map
make_go_to_eg_map	make_eg_to_go_map
MAP	colsAndKeytypes
mappedkeys	Bimap-keys
mappedkeys,Bimap-method	Bimap-keys
mappedkeys,environment-method	Bimap-keys
mappedkeys,vector-method	Bimap-keys
mappedLkeys	Bimap-direction
mappedLkeys,AgiAnnDbMap-method	Bimap-direction
mappedLkeys,AnnDbBimap-method	Bimap-direction
mappedLkeys,FlatBimap-method	Bimap-direction
mappedLkeys,Go3AnnDbBimap-method	Bimap-direction
mappedRkeys	Bimap-direction
mappedRkeys,AnnDbBimap-method	Bimap-direction
mappedRkeys,AnnDbMap-method	Bimap-direction
mappedRkeys,FlatBimap-method	Bimap-direction
mappedRkeys,Go3AnnDbBimap-method	Bimap-direction
mergeToNamespaceAndExport	AnnotationDbi-internals
metadata,AnnotationDb-method	AnnotationDb-class
mget	Bimap-envirAPI
mget,ANY,Bimap-method	Bimap-envirAPI
mget,Bimap-method	Bimap-envirAPI
MONODELPHIS_DOMESTICA	InparanoidColsAndKeytypes
MONOSIGA_BREVICOLLIS	InparanoidColsAndKeytypes
MUS_MUSCULUS	InparanoidColsAndKeytypes
names,AnnotationDb-method	AnnotationDb-class
NASONIA_VITRIPENNIS	InparanoidColsAndKeytypes
ncol	Bimap-toTable
ncol,Bimap-method	Bimap-toTable
NEMATOSTELLA_VECTENSIS	InparanoidColsAndKeytypes
NEUROSPORA_CRASSA	InparanoidColsAndKeytypes
nhit	Bimap-toTable
nhit,Bimap-method	Bimap-toTable
nhit,environment-method	Bimap-toTable
nhit,list-method	Bimap-toTable
nrow	Bimap-toTable
nrow,AnnDbBimap-method	Bimap-toTable
nrow,AnnDbTable-method	Bimap-toTable
nrow,Bimap-method	Bimap-toTable
nrow,FlatBimap-method	Bimap-toTable
nrow,Go3AnnDbBimap-method	Bimap-toTable
OMIM	colsAndKeytypes
ONTOLOGY	GOColsAndKeytypes
Ontology	GOTerms-class
Ontology,character-method	GOTerms-class
Ontology,GOTerms-method	GOTerms-class
Ontology,GOTermsAnnDbBimap-method	GOTerms-class
ONTOLOGYALL	colsAndKeytypes
ORF	colsAndKeytypes
OrgDb-class	AnnotationDb-class
ORNITHORHYNCHUS_ANATINUS	InparanoidColsAndKeytypes
ORYZA_SATIVA	InparanoidColsAndKeytypes
ORYZIAS_LATIPES	InparanoidColsAndKeytypes
OSTREOCOCCUS_TAURI	InparanoidColsAndKeytypes
PAN_TROGLODYTES	InparanoidColsAndKeytypes
PATH	colsAndKeytypes
PEDICULUS_HUMANUS	InparanoidColsAndKeytypes
PFAM	colsAndKeytypes
PHYSCOMITRELLA_PATENS	InparanoidColsAndKeytypes
PHYTOPHTHORA_RAMORUM	InparanoidColsAndKeytypes
PHYTOPHTHORA_SOJAE	InparanoidColsAndKeytypes
PLASMODIUM_FALCIPARUM	InparanoidColsAndKeytypes
PLASMODIUM_VIVAX	InparanoidColsAndKeytypes
PMID	colsAndKeytypes
PONGO_PYGMAEUS	InparanoidColsAndKeytypes
POPULUS_TRICHOCARPA	InparanoidColsAndKeytypes
print.probetable	print.probetable
PRISTIONCHUS_PACIFICUS	InparanoidColsAndKeytypes
ProbeAnnDbBimap	Bimap
ProbeAnnDbBimap-class	Bimap
ProbeAnnDbMap	Bimap
ProbeAnnDbMap-class	Bimap
ProbeGo3AnnDbBimap	Bimap
ProbeGo3AnnDbBimap-class	Bimap
PROBEID	colsAndKeytypes
ProbeIpiAnnDbMap	Bimap
ProbeIpiAnnDbMap-class	Bimap
PROSITE	colsAndKeytypes
PUCCINIA_GRAMINIS	InparanoidColsAndKeytypes
Rattribnames	Bimap-toTable
Rattribnames,AnnDbBimap-method	Bimap-toTable
Rattribnames,Bimap-method	Bimap-toTable
Rattribnames<-	Bimap-toTable
Rattribnames<-,AnnDbBimap-method	Bimap-toTable
Rattribnames<-,FlatBimap-method	Bimap-toTable
Rattribnames<-,Go3AnnDbBimap-method	Bimap-toTable
RATTUS_NORVEGICUS	InparanoidColsAndKeytypes
ReactomeDb-class	AnnotationDb-class
REFSEQ	colsAndKeytypes
revmap	Bimap-direction
revmap,AnnDbBimap-method	Bimap-direction
revmap,Bimap-method	Bimap-direction
revmap,environment-method	Bimap-direction
revmap,list-method	Bimap-direction
RHIZOPUS_ORYZAE	InparanoidColsAndKeytypes
Rkeyname	Bimap-toTable
Rkeyname,AnnDbBimap-method	Bimap-toTable
Rkeyname,Bimap-method	Bimap-toTable
Rkeys	Bimap-direction
Rkeys,AnnDbBimap-method	Bimap-direction
Rkeys,AnnDbMap-method	Bimap-direction
Rkeys,FlatBimap-method	Bimap-direction
Rkeys,Go3AnnDbBimap-method	Bimap-direction
Rkeys<-	Bimap-direction
Rkeys<-,AnnDbBimap-method	Bimap-direction
Rkeys<-,FlatBimap-method	Bimap-direction
Rlength	Bimap-direction
Rlength,AnnDbBimap-method	Bimap-direction
Rlength,AnnDbMap-method	Bimap-direction
Rlength,Bimap-method	Bimap-direction
Rlength,Go3AnnDbBimap-method	Bimap-direction
SACCHAROMYCES_CEREVISIAE	InparanoidColsAndKeytypes
sample	Bimap-envirAPI
sample,Bimap-method	Bimap-envirAPI
sample,environment-method	Bimap-envirAPI
saveDb	AnnotationDb-class
saveDb,AnnotationDb-method	AnnotationDb-class
SCHISTOSOMA_MANSONI	InparanoidColsAndKeytypes
SCHIZOSACCHAROMYCES_POMBE	InparanoidColsAndKeytypes
SCLEROTINIA_SCLEROTIORUM	InparanoidColsAndKeytypes
Secondary	GOTerms-class
Secondary,character-method	GOTerms-class
Secondary,GOTerms-method	GOTerms-class
Secondary,GOTermsAnnDbBimap-method	GOTerms-class
select	AnnotationDb-class
select,ChipDb-method	AnnotationDb-class
select,GODb-method	AnnotationDb-class
select,Inparanoid8Db-method	AnnotationDb-class
select,InparanoidDb-method	AnnotationDb-class
select,OrgDb-method	AnnotationDb-class
select,ReactomeDb-method	AnnotationDb-class
setInpBimapFilter	BimapFiltering
setInpBimapFilter,InpAnnDbBimap-method	BimapFiltering
SGD	colsAndKeytypes
show,AnnDbBimap-method	Bimap
show,AnnDbTable-method	Bimap-keys
show,AnnotationDb-method	AnnotationDb-class
show,FlatBimap-method	Bimap
show,GOTerms-method	GOTerms-class
show,L2Rlink-method	AnnotationDbi-internals
showQCData	AnnotationDbi-internals
SMART	colsAndKeytypes
SORGHUM_BICOLOR	InparanoidColsAndKeytypes
species	AnnotationDb-class
species,AnnotationDb-method	AnnotationDb-class
STAGONOSPORA_NODORUM	InparanoidColsAndKeytypes
STRONGYLOCENTROTUS_PURPURATUS	InparanoidColsAndKeytypes
subset	Bimap-direction
subset,AnnDbBimap-method	Bimap-direction
subset,Bimap-method	Bimap-direction
summary,AnnDbBimap-method	Bimap
summary,Bimap-method	Bimap
supportedSeqnameMappings	deprecated
supportedSeqnames	deprecated
supportedSeqnameStyles	deprecated
SYMBOL	colsAndKeytypes
Synonym	GOTerms-class
Synonym,character-method	GOTerms-class
Synonym,GOTerms-method	GOTerms-class
Synonym,GOTermsAnnDbBimap-method	GOTerms-class
tagname	Bimap-toTable
tagname,AnnDbBimap-method	Bimap-toTable
tagname,Bimap-method	Bimap-toTable
tail	Bimap-toTable
tail,FlatBimap-method	Bimap-toTable
TAIR	colsAndKeytypes
TAKIFUGU_RUBRIPES	InparanoidColsAndKeytypes
TERM	GOColsAndKeytypes
Term	GOTerms-class
Term,character-method	GOTerms-class
Term,GOTerms-method	GOTerms-class
Term,GOTermsAnnDbBimap-method	GOTerms-class
testSeqnames	deprecated
TETRAHYMENA_THERMOPHILA	InparanoidColsAndKeytypes
TETRAODON_NIGROVIRIDIS	InparanoidColsAndKeytypes
THALASSIOSIRA_PSEUDONANA	InparanoidColsAndKeytypes
THEILERIA_ANNULATA	InparanoidColsAndKeytypes
THEILERIA_PARVA	InparanoidColsAndKeytypes
toggleProbes	BimapFiltering
toggleProbes,ProbeAnnDbBimap-method	BimapFiltering
toggleProbes,ProbeAnnDbMap-method	BimapFiltering
toggleProbes,ProbeGo3AnnDbBimap-method	BimapFiltering
toggleProbes,ProbeIpiAnnDbMap-method	BimapFiltering
toSQLStringSet	toSQLStringSet
toTable	Bimap-toTable
toTable,Bimap-method	Bimap-toTable
toTable,FlatBimap-method	Bimap-toTable
TRIBOLIUM_CASTANEUM	InparanoidColsAndKeytypes
TRICHOMONAS_VAGINALIS	InparanoidColsAndKeytypes
TRICHOPLAX_ADHAERENS	InparanoidColsAndKeytypes
TRYPANOSOMA_CRUZI	InparanoidColsAndKeytypes
UNIGENE	colsAndKeytypes
UNIPROT	colsAndKeytypes
unlist2	unlist2
USTILAGO_MAYDIS	InparanoidColsAndKeytypes
XENOPUS_TROPICALIS	InparanoidColsAndKeytypes
YARROWIA_LIPOLYTICA	InparanoidColsAndKeytypes
[,Bimap-method	Bimap-keys
[[,Bimap-method	Bimap-envirAPI