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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 | Package: cummeRbund
Title: Analysis, exploration, manipulation, and visualization of
Cufflinks high-throughput sequencing data.
Version: 2.6.1
Date: 2012-05-04
Author: L. Goff, C. Trapnell, D. Kelley
Description: Allows for persistent storage, access, exploration, and
manipulation of Cufflinks high-throughput sequencing data. In
addition, provides numerous plotting functions for commonly
used visualizations.
Imports: methods, plyr, BiocGenerics
Depends: R (>= 2.7.0), BiocGenerics (>= 0.3.2), RSQLite, ggplot2,
reshape2, fastcluster, rtracklayer, Gviz
Suggests: cluster, plyr
Maintainer: Loyal A. Goff <lgoff@csail.mit.edu>
License: Artistic-2.0
Collate: AllGenerics.R AllClasses.R database-setup.R methods-CuffSet.R
methods-CuffData.R methods-CuffDist.R methods-CuffGeneSet.R
methods-CuffFeatureSet.R methods-CuffGene.R
methods-CuffFeature.R tools.R
LazyLoad: yes
biocViews: Sequencing, RNASeq, RNAseqData, GeneExpression,
DifferentialExpression, Infrastructure, DataImport,
DataRepresentation, Visualization, Clustering,
MultipleComparison, QualityControl
Packaged: 2014-05-30 06:12:09 UTC; biocbuild
Built: R 3.1.1; ; 2014-07-30 21:23:29 UTC; unix
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