This file is indexed.

/usr/share/vtk/VolumeRendering/Python/VolumePicker.py is in vtk-examples 5.8.0-17.5.

This file is owned by root:root, with mode 0o755.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
#!/usr/bin/env python

##
# This is an example of how to use the vtkVolumePicker.
## 

import math
import vtk
from vtk.util.misc import vtkGetDataRoot
VTK_DATA_ROOT = vtkGetDataRoot()

#---------------------------------------------------------
# renderer and interactor
ren = vtk.vtkRenderer()
renWin = vtk.vtkRenderWindow()
renWin.AddRenderer(ren)
iren = vtk.vtkRenderWindowInteractor()
iren.SetRenderWindow(renWin)

#---------------------------------------------------------
# read the volume
reader = vtk.vtkImageReader2()
reader.SetDataExtent(0,63,0,63,0,92)
reader.SetFileNameSliceOffset(1)
reader.SetDataScalarTypeToUnsignedShort()
reader.SetDataByteOrderToLittleEndian()
reader.SetFilePrefix(str(VTK_DATA_ROOT) + "/Data/headsq/quarter")
reader.SetDataSpacing(3.2,3.2,1.5)

#---------------------------------------------------------
# set up the volume rendering
volumeMapper = vtk.vtkVolumeTextureMapper3D()
volumeMapper.SetInput(reader.GetOutput())
volumeMapper.CroppingOn()
volumeMapper.SetCroppingRegionPlanes((0.0, 141.6, 0.0, 201.6, 0.0, 138.0))

volumeColor = vtk.vtkColorTransferFunction()
volumeColor.AddRGBPoint(0,0.0,0.0,0.0)
volumeColor.AddRGBPoint(180,0.3,0.1,0.2)
volumeColor.AddRGBPoint(1000,1.0,0.7,0.6)
volumeColor.AddRGBPoint(2000,1.0,1.0,0.9)

volumeScalarOpacity = vtk.vtkPiecewiseFunction()
volumeScalarOpacity.AddPoint(0,0.0)
volumeScalarOpacity.AddPoint(180,0.0)
volumeScalarOpacity.AddPoint(1000,0.2)
volumeScalarOpacity.AddPoint(2000,0.8)

volumeGradientOpacity = vtk.vtkPiecewiseFunction()
volumeGradientOpacity.AddPoint(0,0.0)
volumeGradientOpacity.AddPoint(90,0.5)
volumeGradientOpacity.AddPoint(100,1.0)

volumeProperty = vtk.vtkVolumeProperty()
volumeProperty.SetColor(volumeColor)
volumeProperty.SetScalarOpacity(volumeScalarOpacity)
volumeProperty.SetGradientOpacity(volumeGradientOpacity)
volumeProperty.SetInterpolationTypeToLinear()
volumeProperty.ShadeOff()
volumeProperty.SetAmbient(0.6)
volumeProperty.SetDiffuse(0.6)
volumeProperty.SetSpecular(0.1)

volume = vtk.vtkVolume()
volume.SetMapper(volumeMapper)
volume.SetProperty(volumeProperty)

#---------------------------------------------------------
# Do the surface rendering
boneExtractor = vtk.vtkMarchingCubes()
boneExtractor.SetInputConnection(reader.GetOutputPort())
boneExtractor.SetValue(0,1150)

boneNormals = vtk.vtkPolyDataNormals()
boneNormals.SetInputConnection(boneExtractor.GetOutputPort())
boneNormals.SetFeatureAngle(60.0)

boneStripper = vtk.vtkStripper()
boneStripper.SetInputConnection(boneNormals.GetOutputPort())

boneLocator = vtk.vtkCellLocator()
boneLocator.SetDataSet(boneExtractor.GetOutput())
boneLocator.LazyEvaluationOn()

boneMapper = vtk.vtkPolyDataMapper()
boneMapper.SetInputConnection(boneStripper.GetOutputPort())
boneMapper.ScalarVisibilityOff()

boneProperty = vtk.vtkProperty()
boneProperty.SetColor(1.0,1.0,0.9)

bone = vtk.vtkActor()
bone.SetMapper(boneMapper)
bone.SetProperty(boneProperty)

#---------------------------------------------------------
# Create an image actor
table = vtk.vtkLookupTable()
table.SetRange(0,2000)
table.SetRampToLinear()
table.SetValueRange(0,1)
table.SetHueRange(0,0)
table.SetSaturationRange(0,0)

mapToColors = vtk.vtkImageMapToColors()
mapToColors.SetInputConnection(reader.GetOutputPort())
mapToColors.SetLookupTable(table)
mapToColors.GetOutput().Update()

imageActor = vtk.vtkImageActor()
imageActor.SetInput(mapToColors.GetOutput())
imageActor.SetDisplayExtent(32,32,0,63,0,92)

#---------------------------------------------------------
# make a transform and some clipping planes
transform = vtk.vtkTransform()
transform.RotateWXYZ(-20,0.0,-0.7,0.7)

volume.SetUserTransform(transform)
bone.SetUserTransform(transform)
imageActor.SetUserTransform(transform)

c = volume.GetCenter()

volumeClip = vtk.vtkPlane()
volumeClip.SetNormal(0,1,0)
volumeClip.SetOrigin(c[0],c[1],c[2])

boneClip = vtk.vtkPlane()
boneClip.SetNormal(1,0,0)
boneClip.SetOrigin(c[0],c[1],c[2])

volumeMapper.AddClippingPlane(volumeClip)
boneMapper.AddClippingPlane(boneClip)

#---------------------------------------------------------
ren.AddViewProp(volume)
ren.AddViewProp(bone)
ren.AddViewProp(imageActor)

camera = ren.GetActiveCamera()
camera.SetFocalPoint(c[0],c[1],c[2])
camera.SetPosition(c[0] + 500,c[1] - 100,c[2] - 100)
camera.SetViewUp(0,0,-1)

renWin.Render()

#---------------------------------------------------------
# the cone points along the -x axis
coneSource = vtk.vtkConeSource()
coneSource.CappingOn()
coneSource.SetHeight(12)
coneSource.SetRadius(5)
coneSource.SetResolution(31)
coneSource.SetCenter(6,0,0)
coneSource.SetDirection(-1,0,0)

coneMapper = vtk.vtkDataSetMapper()
coneMapper.SetInputConnection(coneSource.GetOutputPort())

redCone = vtk.vtkActor()
redCone.PickableOff()
redCone.SetMapper(coneMapper)
redCone.GetProperty().SetColor(1,0,0)

greenCone = vtk.vtkActor()
greenCone.PickableOff()
greenCone.SetMapper(coneMapper)
greenCone.GetProperty().SetColor(0,1,0)

# Add the two cones (or just one, if you want)
ren.AddViewProp(redCone)
ren.AddViewProp(greenCone)

#---------------------------------------------------------
# the picker
picker = vtk.vtkVolumePicker()
picker.SetTolerance(1e-6)
picker.SetVolumeOpacityIsovalue(0.1)
# locator is optional, but improves performance for large polydata
picker.AddLocator(boneLocator)

# A function to point an actor along a vector
def PointCone(actor,nx,ny,nz):
    actor.SetOrientation(0.0, 0.0, 0.0)
    n = math.sqrt(nx**2 + ny**2 + nz**2)
    if (nx < 0.0):
        actor.RotateWXYZ(180, 0, 1, 0)
        n = -n
    actor.RotateWXYZ(180, (nx+n)*0.5, ny*0.5, nz*0.5)

# A function to move the cursor with the mouse
def MoveCursor(iren,event=""):
    renWin.HideCursor()
    x,y = iren.GetEventPosition()
    picker.Pick(x, y, 0, ren)
    p = picker.GetPickPosition()
    n = picker.GetPickNormal()
    redCone.SetPosition(p[0],p[1],p[2])
    PointCone(redCone,n[0],n[1],n[2])
    greenCone.SetPosition(p[0],p[1],p[2])
    PointCone(greenCone,-n[0],-n[1],-n[2])
    iren.Render()

#---------------------------------------------------------
# custom interaction
iren.AddObserver("MouseMoveEvent", MoveCursor)

iren.Start()