/usr/share/xcrysden/Tcl/openExtStruct.tcl is in xcrysden-data 1.5.60-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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# Author: #
# ------ #
# Anton Kokalj Email: Tone.Kokalj@ijs.si #
# Department of Physical and Organic Chemistry Phone: x 386 1 477 3523 #
# Jozef Stefan Institute Fax: x 386 1 477 3811 #
# Jamova 39, SI-1000 Ljubljana #
# SLOVENIA #
# #
# Source: $XCRYSDEN_TOPDIR/Tcl/openExtStruct.tcl #
# ------ #
# Copyright (c) 1996-2003 by Anton Kokalj #
#############################################################################
proc openExtStruct {dim spec state program program_output \
file_type unit {args {}}} {
global fileselect system periodic species geng xcMisc wn
#
# dim
# ... dimension of the structure
# spec
# ... structure (i.e. species) name (molecule/polymer/slab/crystal)
# state
# ... could be either external or external34
# program
# ... name of the converting program (full-path name)
# program_output
# ... output file-name created by converting program;
#
# if $program_output==stdout, then converting
# program reads from stdin and writes to stdout !!!
#
# file_type
# ... type of file; it is just a name like "PWSCF Input File"
# unit
# ... lenghth unit (ANGS/BOHR) for $program_oputput
# args
# ... additional arguments like:
#
# -preset ... presetting procedure (used for pseudopotential codes,
# where atomic numbers should be queried: see files
# fhiPreset.tcl & pwPreset.tcl)
# -file ... filename to open; used when launched as command line
# option
#
#
# internal checking of parameters !!!
#
if { $unit != "ANGS" && $unit != "BOHR" } {
xcDebug -stderr "openExtStruct: Syntax Error -- unit must be ANGS or BOHR"
exit 1
}
if { $state != "external" && $state != "external34" } {
xcDebug -stderr "openExtStruct: Syntax Error -- state must be external or external34"
exit 1
}
if { $dim < 0 || $dim > 3 } {
xcDebug -stderr "openExtStruct: Syntax Error -- dim must be within \[0,3\]"
exit 1
}
################
# parsing args #
################
set i 0
set file {}
set preset {}
foreach option $args {
incr i
# odd cycles are tags, even options
if { $i%2 } {
set tag $option
} else {
xcDebug -debug "openExtStruct Options:: $tag $option"
switch -- $tag {
"-file" {set file $option}
"-preset" {set preset $option}
default {
tk_dialog .mb_error Error "ERROR: Bad \"openExtStruct\" configure option $tag" error 0 OK
return 0
}
}
}
}
if { $i%2 } {
tk_dialog .mb_error1 Error "ERROR: You called openExtStruct with an odd number of args !" error 0 OK
return 0
}
#
# check/set $file
#
if { $file == {}} {
fileselect "Open $file_type File"
if { $fileselect(path) != "" } {
set file $fileselect(path)
} else {
puts stderr "WARNING:: \fileselect(path) = \"\""
flush stderr
return
}
}
if ![file exists $file] {
tk_dialog .update \
"WARNING !!!" "WARNING: File \"$file\" does not exists !!!" \
warning 0 OK
return
}
set file [gunzipFile $file]
# *****************
# check/set $preset
# *****************
# RETURN status:
# 0 ... CANCEL button was pressed OR an ERROR occured --
# -- (should be taken care within $preset routine)
# 1 ... $preset routine ended successfully
if { $preset != {} } {
if ![eval $preset $file] {
return 0
}
}
# for GenGeom to know from which file to read XSF
set xcMisc(external_xsf_name) $program_output
set periodic(dim) $dim
set species $spec
#
# update the title of "."
#
set xcMisc(titlefile) $file
wm title . "XCrySDen: [file tail $file]"
file copy -force $file $system(SCRDIR)/xc_${state}.$system(PID)
##############################
cd $system(SCRDIR)
##############################
# execute CONVERTING program #
##############################
if { $program_output != "stdout" } {
eval xcCatchExecReturn $program $file
#if [catch {exec $program $file} errMsg] {
# set id [tk_dialog [WidgetName] ERROR \
# "ERROR while executing \"$program\" program" \
# error 0 OK {Error Info}]
# if { $id == 1 } {
# xcDisplayVarText $errMsg {Error Info}
# }
# return
#}
} else {
set program_output $system(SCRDIR)/xc_out.$system(PID)
eval xcCatchExecReturn $program < $file > $program_output
#if [catch {exec $program < $file > $program_output} errMsg] {
# set id [tk_dialog [WidgetName] ERROR \
# "ERROR while executing \"$program\" program" \
# error 0 OK {Error Info}]
# if { $id == 1 } {
# xcDisplayVarText $errMsg {Error Info}
# }
# return
#}
}
# check if $program_output was created ?!!
if { ! [file exists $program_output] } {
tk_dialog [WidgetName] ERROR "openExtStruct ERROR:: $program_output file does not exists !!!" error 0 OK
return
}
set geng(M3_ARGUMENT) [GetGengM3Arg $unit 95]
#
# determine periodic(igroup)
#
if { $state == "external34" } {
xcAppendState $state
xcCatchExecReturn $system(BINDIR)/gengeom $geng(M1_INFO) 1 $geng(M3_ARGUMENT) \
1 1 1 1 $system(SCRDIR)/xc_gengeom.$system(PID)
set fileID [open "$system(SCRDIR)/xc_gengeom.$system(PID)" r]
GetDimGroup periodic(dim) periodic(igroup) $fileID
close $fileID
ResetDispModes
CellMode
OpenStruct .mesa $system(SCRDIR)/xc_struc.$system(PID)
set light On
Lighting On
# append 'render' to XCState(state) if "render" is not defines yet
xcAppendState render
xcUpdateState
return
} else {
# state == external (means the format of $program_output is XSF)
xsfOpen $program_output .mesa
return
#xcCatchExecReturn $system(BINDIR)/gengeom $geng(M1_INFO) 1 $geng(M3_ARGUMENT) \
# 1 1 1 1 $system(SCRDIR)/xc_gengeom.$system(PID) \
# $program_output
}
}
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