/usr/share/xcrysden/Tcl/runC95.tcl is in xcrysden-data 1.5.60-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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# Author: #
# ------ #
# Anton Kokalj Email: Tone.Kokalj@ijs.si #
# Department of Physical and Organic Chemistry Phone: x 386 1 477 3523 #
# Jozef Stefan Institute Fax: x 386 1 477 3811 #
# Jamova 39, SI-1000 Ljubljana #
# SLOVENIA #
# #
# Source: $XCRYSDEN_TOPDIR/Tcl/runC95.tcl
# ------ #
# Copyright (c) 1996-2014 by Anton Kokalj #
#############################################################################
proc RunAndGetC95Output {command bg_how input_var} {
global system
set out $system(SCRDIR)/xc_output.$system(PID)
if { ! [RunC95 $command $bg_how $input_var $out ] } {
return 0
}
return [ReadFile $out]
}
proc RunC95 {command bg_how input_var \
{output_file {}} {is_string {}} {dir {}}} {
global system prop runC95
# command ... one of integrals, scf, scfdir, properties
#
# bg_how ... how to handle background execution:
# $bg_how == {} | {message <message_text>} | bg
# {} ... calculation is fast; give no feed-back to the user
# message . calculation can be long; display some message to
# the user
# bg ... calculation is probably very long;
# just submit to the background and forget about it.
# "{}" & "message" works via fileevent, whereas bg submit the
# job to background and forget about it.
#
# input_var ... variable where input is stored
#
# output_file ... name of output file
#
# is_string ... check if $is_string appear in crystal95's output
# this is just in any case
set runC95(output) {}
#
# check if the $command is allowed command
#
set match 0
foreach com [list $system(c95_integrals) $system(c95_scf) \
$system(c95_scfdir) $system(c95_properties)] {
if { $com == $command } { set match 1 }
}
if { ! $match } {
tk_dialog [WidgetName] "ERROR" "ERROR: CRYSTAL-$system(c95_version)'s command \"${command}:\" not found, must be one of: $system(c95_integrals), $system(c95_scf), $system(c95_scfdir), $system(c95_properties)" error 0 OK
return 0
}
#
# if dir is not defined, use default one
#
if { $dir == "" } {
set dir $system(SCRDIR)
}
#
# what is the output file ???
#
if { $output_file == "" } {
set output_file $system(SCRDIR)/xc_output.$system(PID)
}
set runC95(output_file) $output_file
set inp $dir/xc_tmp.$system(PID)
WriteFile $inp $input_var
#
# if the species is EXTERNAL
#
cxxManageExternal
####CD DIR#######
# now go to dir #
cd $dir
xcDebug -stderr "Crystal Input:\n--------------\n$input_var"
xcDebug "PWD = [pwd]"
if { $bg_how != "bg" } {
if { [lindex $bg_how 0] == "message" } {
###################################################################
# calculation can take some time, it's needed to
# give some feed back to the user.
set oldgrab [grab current]
set mw [DisplayUpdateWidget "Calculating" [lindex $bg_how 1]]
catch { grab $mw }
}
#
# change cursor to watch, to indicate that something is going on
#
SetWatchCursor
# ================================
# run CRYSTAL in background mode
# ================================
set runC95(command) $command
set runC95(fileID) [open "| $command < $inp 2> /dev/null" r]
fconfigure $runC95(fileID) -blocking 0
fileevent $runC95(fileID) readable C95FileEvent
tkwait variable runC95(done)
ResetCursor
xcSwapBuffers
if { [lindex $bg_how 0] == "message" } {
destroy $mw
if { $oldgrab != {} } {
catch { grab $oldgrab }
}
}
#
# has an error occured during CRYSTAL execution
#
if { $runC95(error) == 1 } {
#if [catch {exec $command < $inp > $output_file} err]
#C95Error $command $output_file $err
cd $system(SCRDIR)
unset runC95
ResetCursor
return 0
} else {
# if CRYSTAL has exited nicely, it does not mean that an
# error didn't occure; check for ERROR string (here
# CRYSTAL06 and later seems aexception when keyword STOP
# is used)
set is_str 0
set is_err 0
set fileID [open $output_file r]
foreach line [split [read $fileID] \n] {
if { [string match "*ERROR \*\*\*\**" $line] } {
# check for CRYSTAL06 line: "... STOP KEYWORD - EXECUTION STOPS"
if { ($system(c95_version) == "06" || $system(c95_version) == "09" || $system(c95_version) == "14") \
&& [string match "*STOP KEYWORD - EXECUTION STOPS*" $line] } {
# OK, we don't have error
continue
} else {
close $fileID
C95Error
cd $system(SCRDIR)
unset runC95
ResetCursor
return 0
}
}
if { $is_string != "" } {
if [string match "*${is_string}*" $line] {
set is_str 1
}
}
}
if { $is_string != "" && $is_str == 0} {
tk_dialog [WidgetName] "CRYSTAL ERROR" "ERROR: pattern \"$is_string\" not found in CRYSTAL-$system(c95_version)'s output; this may be bug in program - please report to author !!! \nCode: RunC95 -pattern not found-" error 0 OK
close $fileID
cd $system(SCRDIR)
unset runC95
ResetCursor
return 0
}
close $fileID
# t.k: zakaj skopira unit 34 ??????
if { $dir != $system(SCRDIR) } {
# copy ftn34 to $system(SCRDIR)
if [file exists $dir/$prop(file)34] {
file copy -force $dir/$prop(file)34 $system(SCRDIR)/$prop(file)34
}
}
cd $system(SCRDIR)
unset runC95
ResetCursor
xcDebug "end of RunC95"
return 1
}
}
}
proc C95FileEvent {} {
global runC95
if { ! [eof $runC95(fileID)] } {
append runC95(output) [gets $runC95(fileID)]\n
return
} else {
xcDebug "In C95FileEvent"
set runC95(error) 0
if { [catch {close $runC95(fileID)}] } {
xcDebug "In C95FileEvent: error while closing the process"
set runC95(error) 1
}
#
# write $output to runC95(output_file)
#
set fileID [open $runC95(output_file) w]
puts $fileID $runC95(output)
flush $fileID
close $fileID
#
# if we have an error display tk_dialog
#
if { $runC95(error) } {
C95Error
}
set runC95(done) 1
}
}
proc C95Error {} {
global c95error runC95 system
set button [tk_dialog [WidgetName] ERROR \
"ERROR occured while executing CRYSTAL-$system(c95_version) command: $runC95(command)" \
error 0 OK Details]
if { $button == 1} {
set oldgrab [grab current]
set t [xcToplevel [WidgetName] "CRYSTAL ERROR" "ERROR" \
. 100 100 1]
catch { grab $t }
set fileID [open $runC95(output_file) r]
set output [read $fileID]
close $fileID
set text [DispText $t.f $output 80 35]
set fric [lindex [$text yview] 1]
$text yview moveto [expr 1.0 - $fric]
$text config -state disabled
proc C95ErrorCan {} {
global c95error
set c95error(done) 1
}
set f2 [frame $t.f2 -height 10]
pack $f2 -side bottom -before $t.f -fill x
set close [button $f2.cl -text "Close" \
-command C95ErrorCan]
pack $close -side left -expand 1 -ipadx 2 -ipady 2 -pady 10
tkwait variable c95error(done)
unset c95error
catch { grab release $t }
destroy $t
if { $oldgrab != "" } {
catch { grab $oldgrab }
}
}
}
#
# Purpose: driver proc for executing CRYSTAL for Advanced-Geom manipulations
#
proc RunC95_advGeom {input option error_text} {
global system
# cd to SCRATCH dir
cd $system(SCRDIR)
set output xc_output.$system(PID)
cxxManageExternal
if { [catch {exec $system(c95_integrals) < $input > $output} errMsg] } {
# printing the "FORTRAN STOP" to stderr cause the error. Check !!!
if { $errMsg != "FORTRAN STOP" } {
# a real error occurred
ErrorDialog "an error occured for option: $option. Please try Again !!!" $errMsg
# delete last AdvGeom state
xcAdvGeomState delete
ResetCursor
return 0
}
}
# if CRYSTAL has exited nicely, it does not mean that an error
# didn't occure; check for ERROR (here CRYSTAL06 and later seems
# an exception when keyword STOP is used)
set file [ReadFile $output]
foreach line [split $file \n] {
if { [string match "*ERROR \*\*\*\**" $line] } {
# check for CRYSTAL06 line: "... STOP KEYWORD - EXECUTION STOPS"
if { ($system(c95_version) == "06" || $system(c95_version) == "09" || $system(c95_version) == "14") \
&& [string match "*STOP KEYWORD - EXECUTION STOPS*" $line] } {
# OK, we don't have error
continue
} else {
ErrorDialogInfo "$error_text Please try Again !!!" $file
# delete last AdvGeom state
xcAdvGeomState delete
ResetCursor
return 0
}
}
}
return 1
}
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