This file is indexed.

/usr/include/camitk-3.3/components/physicalmodel/StructuralComponentDC.h is in libcamitk3-dev 3.3.2-2.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
/*****************************************************************************
 * $CAMITK_LICENCE_BEGIN$
 *
 * CamiTK - Computer Assisted Medical Intervention ToolKit
 * (c) 2001-2014 UJF-Grenoble 1, CNRS, TIMC-IMAG UMR 5525 (GMCAO)
 *
 * Visit http://camitk.imag.fr for more information
 *
 * This file is part of CamiTK.
 *
 * CamiTK is free software: you can redistribute it and/or modify
 * it under the terms of the GNU Lesser General Public License version 3
 * only, as published by the Free Software Foundation.
 *
 * CamiTK is distributed in the hope that it will be useful,
 * but WITHOUT ANY WARRANTY; without even the implied warranty of
 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
 * GNU Lesser General Public License version 3 for more details.
 *
 * You should have received a copy of the GNU Lesser General Public License
 * version 3 along with CamiTK.  If not, see <http://www.gnu.org/licenses/>.
 *
 * $CAMITK_LICENCE_END$
 ****************************************************************************/

#ifndef StructuralComponentDC_H
#define StructuralComponentDC_H

#include <pml/StructuralComponent.h>

#include "ComponentDC.h"
#include "PMComponentAPI.h"
#include <algorithm>

#include <vtkSmartPointer.h>

class StructuralComponentDCPopup;
class QPixmap;

class QMenu;

class PMManagerDC;

class Atom;

class AtomDC;

class Cell;

class vtkUnstructuredGrid;

class StructuralComponentDC;

class StructuralComponentDCProperties;

class vtkDoubleArray;

namespace std {
/** definition of a couple (=STL pair) [Atom *, unsigned int]
  * this associates an atom to its index in the vtkPoints array.
  */
typedef std::pair<Atom *, unsigned int> AtomVtkPointsIndexPair;
/** definition of the association map (=STL map) AtomVtkPointsIndexMap.
  * AtomVtkPointsIndexMap associate the atoms with their index in the VtkPoints array.
  * The key is the atom, so that it is simple to retrieve the index from the atom
  * (which is supposed to be the most often used functionnality).
  */
typedef std::map <Atom *, unsigned int> AtomVtkPointsIndexMap;
/// the iterator corresponding to the AtomVtkPointsMap
typedef std::map <Atom *, unsigned int>::iterator AtomVtkPointsIndexMapIterator;
}

/**
 *  @ingroup group_cepmodeling_components_physicalmodel
 * 
 *  @brief
 *  The manager of the Structural component data.
 * Maintains a map to tell at what position is a give atom in the vtkPoints list.
 * This class gives also a conveniant method to save a StructuralComponent in a vtk unstructured grid.
 * 
 * 
 **/
class PHYSICALMODEL_COMPONENT_API StructuralComponentDC : public ComponentDC {
  Q_OBJECT
  public:
    /** Default constructor, set the 3rd parameter to false to delay the construction of the Geometry
      * (represention of the DC in 3D).
      * delayRepresentationInit should always be set to true when the constructor is called
      * by a sub-class (see CellDC constructor).
      * If delayRepresentationInit is false (default) and if the default mode is visible,
      * then the SCDC constructor will build an Geometry considering a SC not a sub-class (i.e. Cell).
      */
    StructuralComponentDC(camitk::Component *parent, PMManagerDC * pmManagerDC, StructuralComponent *sc, bool delayRepresentationInit = false);

    /// destructor
    virtual ~StructuralComponentDC();

    /**
    * @name camitk::Component rewritten
    * This methods are overloaded from camitk::Component to give the StructuralComponentDC and
    * its sub classe CellDC a different behaviour.
    */
    ///@{
    virtual QPixmap getIcon();

    /// if the vtkPointSet is modified externally (e.g. by an operator), change the PM structure
    virtual void setPointSet(vtkSmartPointer<vtkPointSet>);

    /// select a specific sub DC using the cell id (do nothing if the SC is not composed by cells)
    virtual void cellPicked(vtkIdType, bool);

    /// select a specific sub DC using the point id (do nothing if the SC is not composed by atoms)
    virtual void pointPicked(vtkIdType, bool);

    /// do not select sub DC if they are AtomDC (AtomDC can only be selected individually)
    virtual void setSelected(const bool, const bool recursive=false);

    /// do not set enhanced modes if children are atomDC
    virtual void setEnhancedModes(const EnhancedModes);

    /// set the rendering mode of the StructuralComponent as well as the DC
    virtual void setRenderingModes(const RenderingModes);

    virtual void setActorColor(const RenderingModes, const double, const double, const double);

    virtual void setActorColor(const RenderingModes, double[4]);

    virtual void setColor(const double, const double, const double);

    virtual void setColor(const double, const double, const double, const double);

    /// add a sub DC: overloaded method to allow change in the physical model data representation
    virtual void addChild(InterfaceNode *);

    /// remove a sub DC: overloaded method to allow change in the physical model data representation
    virtual void removeChild(InterfaceNode *);

    /// Overriden method so that we actually can build a popup menu with different actions
    virtual QMenu * getPopupMenu(QWidget* parent);

    /// reimplement this method to give the property object to the property editor
    virtual QObject * getPropertyObject();
    ///@}

    /** This atom position has been changed, the 3D representation has to be updated.
     *  For optimization reason: if you know the atom order nr in this SCDC, please give it!
     * An atom in the cell position has been changed this method starts the update cascade process, consisting in
     *  updating all the 3D representation of the all the components containing this component, then of
     *  all the components containing all the components containing this component... etc... up
     * to the PM void updatePosition(AtomDC *, CellDC *);
     */
    void updatePosition(AtomDC *, int atomOrderNr = -1);

    /** create all the point data to display specific information
     *  (only works for SCs that have a surface representation).
     *  This will automatically fills up the AtomDC point data pointers.
     */
    virtual void createPointData();

    /// destroy all the point data
    virtual void destroyPointData();

    /** Build an unstructured grid from a Structural Component, and build the correct AtomVtkPointsIndexMap
        */
    static vtkSmartPointer<vtkUnstructuredGrid> structuralComponentToVtk(StructuralComponent *, std::AtomVtkPointsIndexMap *);

    /** Build an unstructured grid from a Structural Component.
        */
    static vtkSmartPointer<vtkUnstructuredGrid> structuralComponentToVtk(StructuralComponent *);

    /// convenient methods
    StructuralComponent *getSC();

    /** return if the structural component is a list of cells or of atoms    */
    StructuralComponent::ComposedBy composedBy();

    /** create an Geometry (composed by vtk unstructured grid of n cells) from the managed SC which is a list of cells */
    camitk::Geometry * cellsToGeometry();

    /// the method to update both atomDCs vector and atomVtkPointsIndexMap
    void updateAtoms();

protected:

    /// nr of atoms
    unsigned int nrOfAtoms;

    /// the point data array
    vtkSmartPointer<vtkDoubleArray> pointData;

  private:
    /** create an Geometry (a vtk unstructured grid of 1 poly vertex) from the managed SC which is a list of atoms */
    camitk::Geometry * atomsToGeometry();

    /// the concrete building of the geometry
    virtual void initRepresentation();

    /// the popup menu
    StructuralComponentDCPopup * myPopupMenu;

    /** list of atom DCs.
        * This list is used only when the structural component is made of cells.
        * This list is here to speed up the application:
        * When you need atom's DC you could always call the PMManager::getDC method, but that is at
        * a high cost. So why not maintain the list of the Atom DCs of the structural component.
        * This list is build/update in the updateAtoms method.
        */
    std::vector <AtomDC *> atomDCs;

    /** cumulative nr of cell and points.
        * Example: if sc=[c0,c1] , c0=[a0,a2,a3] and c1=[a1,a2,a4,a0]
        * then nrOfParts = 1 + 3 + 1 + 4 = 9.
        * Updated in updateAtoms()
        */
    unsigned int nrOfParts;

    /// cell ids in the vtk structures to be removed
    std::vector <unsigned int> cellIdToBeRemoved;

    /// the StructuralComponentDC pixmap
    static QPixmap * myPixmap;

    /// the SC DC properties
    StructuralComponentDCProperties * myProp;

};

inline StructuralComponent * StructuralComponentDC::getSC() {
  return dynamic_cast<StructuralComponent *>(myComponent);
}
#endif