This file is indexed.

/usr/include/dolfin/io/GenericFile.h is in libdolfin-dev 1.4.0+dfsg-4.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
// Copyright (C) 2003-2011 Johan Hoffman and Anders Logg
//
// This file is part of DOLFIN.
//
// DOLFIN is free software: you can redistribute it and/or modify
// it under the terms of the GNU Lesser General Public License as published by
// the Free Software Foundation, either version 3 of the License, or
// (at your option) any later version.
//
// DOLFIN is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
// GNU Lesser General Public License for more details.
//
// You should have received a copy of the GNU Lesser General Public License
// along with DOLFIN. If not, see <http://www.gnu.org/licenses/>.
//
// Modified by Ola Skavhaug 2009.
//
// First added:  2003-07-15
// Last changed: 2013-03-11

#ifndef __GENERIC_FILE_H
#define __GENERIC_FILE_H

#include <map>
#include <string>
#include <utility>
#include <vector>

namespace dolfin
{

  class GenericDofMap;
  class Function;
  class GenericMatrix;
  class GenericVector;
  class LocalMeshData;
  class Mesh;
  template <typename T> class MeshFunction;
  template <typename T> class MeshValueCollection;
  class Parameters;

  class GenericFile
  {
  public:

    /// Constructor
    GenericFile(std::string filename,
                std::string filetype);

    /// Destructor
    virtual ~GenericFile();

    // Input
    virtual void operator>> (Mesh& mesh);
    virtual void operator>> (GenericVector& x);
    virtual void operator>> (GenericMatrix& A);
    virtual void operator>> (GenericDofMap& dofmap);
    virtual void operator>> (LocalMeshData& data);
    virtual void operator>> (MeshFunction<int>& mesh_function);
    virtual void operator>> (MeshFunction<std::size_t>& mesh_function);
    virtual void operator>> (MeshFunction<double>& mesh_function);
    virtual void operator>> (MeshFunction<bool>& mesh_function);
    virtual void operator>> (MeshValueCollection<int>& mesh_markers);
    virtual void operator>> (MeshValueCollection<std::size_t>& mesh_markers);
    virtual void operator>> (MeshValueCollection<double>& mesh_markers);
    virtual void operator>> (MeshValueCollection<bool>& mesh_markers);
    virtual void operator>> (Parameters& parameters);
    virtual void operator>> (std::vector<int>& x);
    virtual void operator>> (std::vector<std::size_t>& x);
    virtual void operator>> (std::vector<double>& x);
    virtual void operator>> (std::map<std::size_t, int>& map);
    virtual void operator>> (std::map<std::size_t, std::size_t>& map);
    virtual void operator>> (std::map<std::size_t, double>& map);
    virtual void operator>> (std::map<std::size_t, std::vector<int> >& array_map);
    virtual void operator>> (std::map<std::size_t, std::vector<std::size_t> >& array_map);
    virtual void operator>> (std::map<std::size_t, std::vector<double> >& array_map);
    virtual void operator>> (Function& u);

    // Output
    virtual void operator<< (const GenericVector& x);
    virtual void operator<< (const GenericMatrix& A);
    virtual void operator<< (const Mesh& mesh);
    virtual void operator<< (const GenericDofMap& dofmap);
    virtual void operator<< (const LocalMeshData& data);
    virtual void operator<< (const MeshFunction<int>& mesh_function);
    virtual void operator<< (const MeshFunction<std::size_t>& mesh_function);
    virtual void operator<< (const MeshFunction<double>& mesh_function);
    virtual void operator<< (const MeshFunction<bool>& mesh_function);
    virtual void operator<< (const MeshValueCollection<int>& mesh_markers);
    virtual void operator<< (const MeshValueCollection<std::size_t>& mesh_markers);
    virtual void operator<< (const MeshValueCollection<double>& mesh_markers);
    virtual void operator<< (const MeshValueCollection<bool>& mesh_markers);
    virtual void operator<< (const Function& u);

    // Output with time
    virtual void operator<< (const std::pair<const Mesh*, double> mesh);
    virtual void operator<< (const std::pair<const MeshFunction<int>*, double> f);
    virtual void operator<< (const std::pair<const MeshFunction<std::size_t>*, double> f);
    virtual void operator<< (const std::pair<const MeshFunction<double>*, double> f);
    virtual void operator<< (const std::pair<const MeshFunction<bool>*, double> f);
    virtual void operator<< (const std::pair<const Function*, double> u);

    virtual void operator<< (const Parameters& parameters);
    virtual void operator<< (const std::vector<int>& x);
    virtual void operator<< (const std::vector<std::size_t>& x);
    virtual void operator<< (const std::vector<double>& x);
    virtual void operator<< (const std::map<std::size_t, int>& map);
    virtual void operator<< (const std::map<std::size_t, std::size_t>& map);
    virtual void operator<< (const std::map<std::size_t, double>& map);
    virtual void operator<< (const std::map<std::size_t, std::vector<int> >& array_map);
    virtual void operator<< (const std::map<std::size_t, std::vector<std::size_t> >& array_map);
    virtual void operator<< (const std::map<std::size_t, std::vector<double> >& array_map);

    void read();
    virtual void write(std::size_t process_number);

    // Return filename
    std::string name() const
    { return _filename; }

  protected:

    void read_not_impl(const std::string object) const;
    void write_not_impl(const std::string object) const;

    std::string _filename;
    std::string _filetype;

    bool opened_read;
    bool opened_write;

    // True if we have written a header
    bool check_header;

    // Counters for the number of times various data has been written
    std::size_t counter;
    std::size_t counter1;
    std::size_t counter2;

  };

}

#endif