/usr/include/gofigure2/SelectQueryDatabaseHelper.h is in libgofigure-dev 0.9.0-3+b1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 294 295 296 297 298 299 300 301 302 303 304 305 306 307 308 309 310 311 312 313 314 315 316 317 318 319 320 321 322 323 324 325 326 327 328 329 330 331 332 333 334 335 336 337 338 339 340 341 342 343 344 345 346 347 348 349 350 351 352 353 354 355 356 357 358 359 360 361 362 363 364 365 366 367 368 369 370 371 372 373 374 375 376 377 378 379 380 381 382 383 384 385 386 387 388 389 390 391 392 393 394 395 396 397 398 399 400 401 402 403 404 405 406 407 408 409 410 411 412 413 414 415 416 417 418 419 420 421 422 423 424 425 426 427 428 429 430 431 432 433 434 435 436 437 438 439 440 441 442 443 444 445 446 447 448 449 450 451 452 453 454 455 456 457 458 459 460 461 462 463 464 465 466 467 468 469 470 471 472 473 474 475 476 477 478 479 480 481 482 483 484 485 486 487 488 489 490 491 492 493 494 495 496 497 498 499 500 501 502 503 504 505 506 507 508 509 510 511 512 513 514 515 516 517 518 519 520 521 522 523 524 525 526 527 528 529 530 531 532 533 534 535 536 537 538 539 540 541 542 543 544 545 546 547 548 549 550 551 552 553 554 555 556 557 558 559 560 561 562 563 564 565 566 567 568 569 570 571 572 573 574 575 576 577 578 579 580 581 582 583 584 585 586 587 588 589 590 591 592 593 594 595 596 597 598 599 600 601 602 603 604 605 606 607 608 609 610 611 612 613 614 615 616 617 618 619 620 621 622 623 624 625 626 627 628 629 630 631 632 633 634 635 636 637 638 639 640 641 642 643 644 645 646 647 648 649 650 651 652 653 654 655 656 657 658 659 660 661 662 663 664 665 666 667 668 669 670 671 672 673 674 675 676 677 678 679 680 681 682 683 684 685 686 687 688 689 690 691 692 693 694 695 696 697 698 699 700 701 702 703 704 705 706 707 708 709 710 711 712 713 714 715 716 717 718 719 720 721 722 723 724 725 726 727 728 729 730 731 732 733 734 735 736 737 738 739 740 741 742 743 744 745 746 747 748 749 750 751 752 753 754 755 756 757 758 759 760 761 762 763 764 765 766 767 768 769 770 771 772 773 774 775 776 777 778 779 780 781 782 783 784 785 786 787 788 789 790 791 792 793 794 795 796 797 798 799 800 801 802 803 804 805 806 807 808 809 810 811 812 813 814 815 816 817 818 819 820 821 822 823 824 825 826 827 828 829 830 831 832 833 | /*=========================================================================
Authors: The GoFigure Dev. Team.
at Megason Lab, Systems biology, Harvard Medical school, 2009-11
Copyright (c) 2009-11, President and Fellows of Harvard College.
All rights reserved.
Redistribution and use in source and binary forms, with or without
modification, are permitted provided that the following conditions are met:
Redistributions of source code must retain the above copyright notice,
this list of conditions and the following disclaimer.
Redistributions in binary form must reproduce the above copyright notice,
this list of conditions and the following disclaimer in the documentation
and/or other materials provided with the distribution.
Neither the name of the President and Fellows of Harvard College
nor the names of its contributors may be used to endorse or promote
products derived from this software without specific prior written
permission.
THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
"AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO,
THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT OWNER OR CONTRIBUTORS
BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY,
OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT
OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE
OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
=========================================================================*/
#ifndef __SelectQueryDatabaseHelper_h
#define __SelectQueryDatabaseHelper_h
#include <vector>
#include <string>
#include "boost/unordered_map.hpp"
#include <list>
#include "itkMacro.h"
#include "vtkMySQLDatabase.h"
#include "vtkSQLQuery.h"
#include "GoDBTraceInfoForVisu.h"
#include "ContourMeshStructure.h"
#include "TrackStructure.h"
#include "LineageStructure.h"
#include "QueryBuilderHelper.h"
#include "ConvertToStringHelper.h"
#include "QGoIOConfigure.h"
/**
\brief SELECT ColumnName from TableName ORDER BY OrderbyColumnName
\param[in] DatabaseConnector connection to the database
\param[in] ColumnName name of the field in the database
\param[in] TableName name of the database table
\param{in] OrderByColumnName sorting
\return all the values for the column sorted or not
*/
QGOIO_EXPORT
std::vector< std::string > ListAllValuesForOneColumn(
vtkMySQLDatabase *DatabaseConnector,
const std::string & ColumnName,
const std::string & TableName,
std::string OrderByColumnName = "");
/**
\brief SELECT ColumnNameOne,ColumnNameTwo FROM TableName ORDER BY
ColumnName ASC
\param[in] DatabaseConnector connection to the database
\param[in] ColumnNameOne first value of the pair
\param[in] ColumnNameTwo second value of the pair
\param[in] TableName name of the database table
\param{in] OrderByColumnName sorting
\return all the values sorted by OrderByColumnName in a vector of pair
*/
QGOIO_EXPORT
std::vector< std::pair< std::string, std::string > >
VectorTwoColumnsFromTable(vtkMySQLDatabase *DatabaseConnector,
const std::string & ColumnNameOne,
const std::string & ColumnNameTwo,
const std::string & TableName,
const std::string & OrderByColumnName);
/**
\brief query: "SELECT ColumnName1, ColumnName2 FROM TableName"
\param[in] DatabaseConnector connection to the database
\param[in] iColumnNames vector[0] = ColumnName1, vector[1] = ColumnName2
\param[in] iTableName name of the database table
\param[in] iField field for the condition if there is one
\param[in] iValue value of the condition if there is one
\return map[Value from ColumnName1] = Value from ColumnName2
*/
QGOIO_EXPORT
boost::unordered_map< std::string, std::string > MapTwoColumnsFromTable(
vtkMySQLDatabase *DatabaseConnector,
const std::vector<std::string> & iColumnNames,
const std::string & iTableName,
std::string iField = "",
std::string iValue = "");
/**
\brief SELECT * FROM TableName WHERE field = value
*/
//if field is a primary key, will return only the values for
//one row
//not used
QGOIO_EXPORT
std::vector< std::string > ListSpecificValuesForRow(
vtkMySQLDatabase *DatabaseConnector,
const std::string & TableName,
const std::string & field,
const std::string & value);
/**
\brief SELECT ColumnName FROM TableName WHERE field = value
\param[in] DatabaseConnector connection to the database
\param[in] TableName name of the database table
\param[in] ColumnName name of the field in the database
\param[in] field field for the condition
\param[in] value value of the condition
\return only one ID
*/
QGOIO_EXPORT
int FindOneID(vtkMySQLDatabase *DatabaseConnector,
const std::string & TableName,
const std::string & ColumnName,
const std::string & field,
const std::string & value);
/**
\overload
\param[in] iConditions vector of fields = values
*/
QGOIO_EXPORT
int FindOneID(vtkMySQLDatabase *DatabaseConnector,
const std::string & TableName,
const std::string & ColumnName,
const std::vector<FieldWithValue> & iConditions);
/**
\brief "SELECT ColumnName FROM TableName WHERE (field1 = value1
AND field2 = value2...);
\param[in] DatabaseConnector connection to the database
\param[in] TableName name of the database table
\param[in] ColumnName name of the field in the database
\param[in] iConditions vector of fields = values
\return all the values in ColumnName that fit the conditions
*/
QGOIO_EXPORT
std::vector< std::string > FindSeveralIDs(
vtkMySQLDatabase * iDatabaseConnector,
const std::string & TableName,
const std::string & ColumnName,
const std::vector<FieldWithValue> & iConditions);
/**
\brief SELECT ColumnName FROM TableName WHERE field = value and
ColumnName <> 0 (if excludezero)
\param[in] iDatabaseConnector connection to the database
\param[in] TableName name of the database table
\param[in] ColumnName name of the field in the database
\param[in] field field for the condition
\param[in] value value of the condition
\param[in] distinct set to true if doublon are not allowed
\param[in] ExcludeZero set to true if ColumnName has to be
different than 0
\return all the values in ColumnName that fit the conditions
*/
QGOIO_EXPORT
std::vector< std::string > ListSpecificValuesForOneColumn(
vtkMySQLDatabase *iDatabaseConnector,
const std::string & TableName,
const std::string & ColumnName,
const std::string & field,
const std::string & value, //bool Distinct = false,
bool ExcludeZero = false);
/**
\brief SELECT ColumnName FROM TableName WHERE field = value
ORDER BY ColumnNameOrder ASC
\overload
\param[in] ColumnNameOrder name of the column for sorting
*/
QGOIO_EXPORT
std::vector< std::string > ListSpecificValuesForOneColumn(
vtkMySQLDatabase *iDatabaseConnector,
const std::string & TableName,
const std::string & ColumnName,
const std::string & field,
const std::string & value,
const std::string & ColumnNameOrder);
/**
\brief SELECT ColumnName FROM TableName WHERE (field = value1
or field = value2 AND ColumnName <> 0 (if excludezero))
\overload
*/
QGOIO_EXPORT
std::vector< std::string > ListSpecificValuesForOneColumn(
vtkMySQLDatabase *iDatabaseConnector,
const std::string & TableName,
const std::string & ColumnName,
const std::string & field,
const std::vector< std::string > & VectorValues,
bool Distinct = false,
bool ExcludeZero = false);
/**
\brief SELECT ColumnName FROM TableName WHERE (field = value1
or field = value2 AND ColumnName <> 0 (if excludezero))
\overload
*/
QGOIO_EXPORT
std::list< unsigned int > ListSpecificValuesForOneColumn(
vtkMySQLDatabase *iDatabaseConnector,
const std::string & TableName,
const std::string & ColumnName,
const std::string & field,
const std::list< unsigned int > & ListValues,
bool Distinct = false,
bool ExcludeZero = false);
/**
\brief SELECT ColumnName FROM TableName WHERE (field1 = value1
or field = value2 AND fieldTwo = ValueFieldTwo )
\overload
*/
QGOIO_EXPORT
std::list< unsigned int > ListSpecificValuesForOneColumn(
vtkMySQLDatabase *iDatabaseConnector,
const std::string & TableName,
const std::string & ColumnName,
const std::string & fieldOne,
const std::list< unsigned int > & ListValuesOne,
const std::string & fieldTwo,
const std::string & ValueFieldTwo);
/**
\brief SELECT ColumnNameOne,ColumnName2 FROM TableName
WHERE field = value ORDER BY ColumnNameOrder ASC"
\param[in] iDatabaseConnector connection to the database
\param[in] TableName name of the database table
\param[in] ColumnNameOne name of the first field in the database
\param[in] ColumnNameTwo name of the second field in the database
\param[in] field field for the condition
\param[in] value value of the condition
\param{in] OrderByColumnName sorting
\return a vector of pair with the values of each Column
*/
QGOIO_EXPORT
std::vector< std::pair< std::string, std::string > >
ListSpecificValuesForTwoColumns(
vtkMySQLDatabase *DatabaseConnector,
const std::string & TableName,
const std::string & ColumnNameOne,
const std::string & ColumnNameTwo,
const std::string & field,
const std::string & value,
const std::string & ColumnNameOrder);
/**
\brief SELECT MAX(ColumnName) FROM TableName WHERE (field =
value1 or field = value2...."
\param[in] DatabaseConnector connection to the database
\param[in] TableName name of the database table
\param[in] ColumnName name of the field in the database
\param[in] field field for the condition
\param[in] VectorValues values of the condition
\return the max value
*/
QGOIO_EXPORT
int MaxValueForOneColumnInTable(
vtkMySQLDatabase *DatabaseConnector,
const std::string & ColumnName,
const std::string & TableName,
const std::string & field,
const std::vector< std::string > & VectorValues);
/**
\brief SELECT MAX(ColumnName) FROM TableName
\overload
*/
QGOIO_EXPORT
int MaxValueForOneColumnInTable(
vtkMySQLDatabase *DatabaseConnector,
const std::string & ColumnName,
const std::string & TableName);
/**
\brief SELECT MAX(ColumnName) FROM TableName WHERE field = value
\overload
*/
QGOIO_EXPORT
int MaxValueForOneColumnInTable(
vtkMySQLDatabase *DatabaseConnector,
const std::string & ColumnName,
const std::string & TableName,
const std::string & field,
const std::string & value);
/**
\brief SELECT MIN(ColumnName) FROM TableName WHERE (field =
value1 or field = value2...."
\param[in] DatabaseConnector connection to the database
\param[in] TableName name of the database table
\param[in] ColumnName name of the field in the database
\param[in] field field for the condition
\param[in] VectorValues values of the condition
\return the minimum value
*/
QGOIO_EXPORT
int MinValueForOneColumnInTable(
vtkMySQLDatabase *DatabaseConnector,
const std::string & ColumnName,
const std::string & TableName,
const std::string & field,
const std::vector< std::string > & VectorValues);
/**
\brief SELECT ColunmName FROM TableName WHERE field=value limit 1
\param[in] iDatabaseConnector connection to the database
\param[in] TableName name of the database table
\param[in] ColumnName name of the field in the database
\param[in] field field for the condition
\param[in] value value of the condition
\return only one value if several are selected
*/
QGOIO_EXPORT
std::string ReturnOnlyOneValue(
vtkMySQLDatabase *DatabaseConnector,
const std::string & TableName,
const std::string & ColumnName,
const std::string & field,
const std::string & value);
QGOIO_EXPORT
std::vector< std::pair< int, std::string > >
ListSpecificValuesForTwoColumnsAndTwoTables(
vtkMySQLDatabase *DatabaseConnector,
const std::string & TableOne,
const std::string & ColumnOne,
const std::string & TableTwo,
const std::string & ColumnTwo,
const std::string & ForeignKey,
const std::string & PrimaryKey,
const std::string & field,
const std::string & value);
/**
\brief fill the TCoord and the attributes of the structure obtained from Points
\param[in] ioStructure structure to be modified with TCoord and co.
\param[in] iTCoord one to be filled with
\param[in] iPoints points from which some attributes will be calculated
\param[in] iTraceName name of the trace
*/
QGOIO_EXPORT
void ModifyStructureWithSpecificities(
ContourMeshStructure & ioStructure,
unsigned int iTCoord,
const std::string & iPoints,
const std::string & iTraceName);
/**
\overload
*/
QGOIO_EXPORT
void ModifyStructureWithSpecificities(
TrackStructure & ioStructure,
unsigned int iTCoord,
const std::string & iPoints,
const std::string & iTraceName);
/**
\overload
*/
QGOIO_EXPORT
void ModifyStructureWithSpecificities(
LineageStructure & ioStructure,
unsigned int iTrackRootID,
const std::string & iPoints,
const std::string & iTraceName);
/**
\brief execute iQueryString and put the results in a list of T structure
\param[in] iDatabaseConnector
\param[in] iQueryString query to execute
\param[in,out] ioListStructure list to be filled with the results of the query
\param[in] iTableOne name of the main table (usually a trace name)
\tparam ContourMeshStructure or TrackStructure
*/
template <typename T>
void ExecuteQueryAndModifyListStructure(
vtkMySQLDatabase* iDatabaseConnector,
const std::string & iQueryString,
std::list<T> & ioListStructure,
const std::string & iTableOne)
{
vtkSQLQuery *query = iDatabaseConnector->GetQueryInstance();
query->SetQuery( iQueryString.c_str() );
if ( !query->Execute() )
{
itkGenericExceptionMacro(
<< "get info traces query failed"
<< query->GetLastErrorText() );
iDatabaseConnector->Close();
iDatabaseConnector->Delete();
query->Delete();
return;
}
while ( query->NextRow() )
{
{
T temp;
temp.TraceID = query->DataValue(0).ToUnsignedInt();
unsigned int SpecifiedValue;
if (iTableOne == "lineage")
{
SpecifiedValue = query->DataValue(1).ToUnsignedInt();
}
else
{
temp.CollectionID = query->DataValue(1).ToUnsignedInt();
SpecifiedValue = query->DataValue(7).ToUnsignedInt();
}
ModifyStructureWithSpecificities(temp, SpecifiedValue,
query->DataValue(6).ToString(), iTableOne);
/// \note For the visualization rgba values are supposed to be double in
/// between 0 and 1; whereas in the database these values are in between
/// 0 and 255.
temp.rgba[0] = ( query->DataValue(2).ToDouble() ) / 255.;
temp.rgba[1] = ( query->DataValue(3).ToDouble() ) / 255.;
temp.rgba[2] = ( query->DataValue(4).ToDouble() ) / 255.;
temp.rgba[3] = ( query->DataValue(5).ToDouble() ) / 255.;
//ModifyStructureWithTCoordAndPoints(temp, query->DataValue(7).ToUnsignedInt(),
// query->DataValue(6).ToString(), iTableOne);
ioListStructure.push_back(temp);
}
}
query->Delete();
}
/**
\brief select iselectedattributes from (tableone left join tabletwo ijoinconditionone)
left join tablethree ijoinconditiontwo where (ifieldone = ivaluefieldone and (iIDfieldname
= ivectids1 or ivectids2...) );
\param[in] iDatabaseConnector connection to the database
\param[in,out] ioListStructure list of Structure to be filled
\param[in] iSelectedAttributes vector of all the attributes to be fetched from the db
\param[in] iTableOne main table involved (usually the table for the trace)
\param[in] iTableTwo table attached to the main table
\param[in] iTableThree table attached to the main table
\param[in] iJoinConditionOne describes how the tabletwo is attached to the main table
\param[in] iJoinConditionTwo describes how the tablethree is attached to the main table
\param[in] iFieldOne first condition
\param[in] iValueFieldOne value for the first condition
\param[in] iIDFieldName field for the IDName where there is a condition
\param[in] iListIDs values for the iIDFieldname
*/
template<typename T>
void GetInfoFromDBAndModifyListStructure(
std::list< T > & ioListStructure,
vtkMySQLDatabase *iDatabaseConnector,
const std::vector<std::string> & iSelectedAttributes,
const std::string & iTableOne,
const std::string & iTableTwo,
const std::string & iTableThree,
const FieldWithValue & iJoinConditionOne,
const FieldWithValue & iJoinConditionTwo,
const std::string & iFieldOne,
unsigned int iValueFieldOne,
const std::string & iIDFieldName,
const std::list< unsigned int > & iListIDs)
{
std::string QueryString = SelectForTracesInfo(iSelectedAttributes, iTableOne, iTableTwo,
iTableThree, iJoinConditionOne, iJoinConditionTwo, iFieldOne, iValueFieldOne, iIDFieldName,
iListIDs);
ExecuteQueryAndModifyListStructure<T>(
iDatabaseConnector, QueryString, ioListStructure, iTableOne);
}
//return a pair with the number of fields in the query and a vector of the
// results:
QGOIO_EXPORT
std::vector< std::vector< std::string > > GetValuesFromSeveralTables(
vtkMySQLDatabase *DatabaseConnector,
const std::string & MainTable,
const std::vector< std::string > & SelectFields,
const std::string & field,
const std::string & value,
const std::vector< std::string > & JoinTablesOnTraceTable,
bool Distinct);
//return a pair with the number of fields in the query and a vector of the
// results,
//the query includes the where conditions from the vector as AND conditions:
QGOIO_EXPORT
std::vector< std::vector< std::string > > GetValuesFromSeveralTables(
vtkMySQLDatabase *DatabaseConnector,
const std::string & MainTable,
const std::vector< std::string > & SelectFields,
const std::vector< std::string > & WhereAndConditions,
const std::vector< std::string > & JoinTablesOnTraceTable,
bool Distinct);
std::vector< std::vector< std::string > > GetValuesFromSeveralTables(
vtkMySQLDatabase *DatabaseConnector,
const std::string & MainTable,
const std::vector< std::string > & SelectFields,
const std::string & field,
const std::string & value,
const std::vector< std::string > & JoinTablesOnTraceTable,
bool Distinct,
const std::vector<FieldWithValue> & iWhereOrConditions);
//query: SELECT where condition1 UNION SELECT where condition1 and condition2
QGOIO_EXPORT
std::vector< std::string >
GetSamefieldFromTwoTables(
vtkMySQLDatabase *DatabaseConnector,
const std::string & iTableOne,
const std::string & iTableTwo,
const std::string & iColumn,
const std::string & iField,
const std::string & iValue,
const std::string & iFieldTwo,
const std::vector< std::string > & iListConditionsTwo);
//query: SELECT iColumnOne FROM TableOne WHERE...UNION SELECT iColumnTwo FROM
// TableOne...
//UNION SELECT iColumnOne FROM TableTwo WHERE....UNION SELECT iColumnTwo FROM
// TableTwo WHERE.
QGOIO_EXPORT
std::vector< std::string >
GetSamefieldsFromTwoTables(vtkMySQLDatabase *DatabaseConnector,
const std::string & iTableOne,
const std::string & iTableTwo,
const std::string & iColumnOne,
const std::string & iColumnTwo,
const std::string & iField,
const std::string & iValue);
//query: select distinct iColumnOne FROM TableOne where ifield = listconditions union select
//distinct icolumntwo from tableOne left join tabletwo on iOnCondition where ifield = listconditions
QGOIO_EXPORT
std::list< unsigned int > GetTwoFieldsFromTwoTables(
vtkMySQLDatabase *DatabaseConnector,
const std::string & iTableOne,
const std::string & iTableTwo,
const FieldWithValue & iOnCondition,
const std::string & iColumnOne,
const std::string & iColumnTwo,
const std::string & iField,
const std::vector< std::string > & iListValues,
bool Distinct);
//query: SELECT iColumnOne FROM TableOne WHERE...UNION SELECT iColumnTwo FROM
// TableOne...
//UNION SELECT iColumnOne FROM TableTwo WHERE listconditions2....
//UNION SELECT iColumnTwo FROM TableTwo WHERE listconditions2.
QGOIO_EXPORT
std::vector< std::string >
GetSamefieldsFromTwoTables(vtkMySQLDatabase *DatabaseConnector,
const std::string & iTableOne,
const std::string & iTableTwo,
const std::string & iColumnOne,
const std::string & iColumnTwo,
const std::string & iField,
const std::string & iValue,
const std::string & iFieldTwo,
const std::vector< std::string > & iListConditionsTwo);
QGOIO_EXPORT
std::vector< std::string >
GetSameFieldsFromSeveralTables(vtkMySQLDatabase *DatabaseConnector,
const std::vector< std::string > & iColumnNames,
const std::vector< std::string > & iVectorTablesNames,
const std::vector< std::string > & iVectorConditionFieldNames,
const std::vector< std::vector< std::string > > & iVectorConditionsValues);
//query: SELECT iColumnName FROM TableName WHERE ( (iFieldOne =
// iVectorConditionFieldOne(i)
// OR iFieldOne = iVectorConditionFieldOne(i+1...) AND (iFieldTwo =
// iVectorConditionFieldTwo(j) OR
//iVectorConditionFieldTwo(j+1)... ) );
QGOIO_EXPORT
std::vector< std::string >
GetSpecificValueFromOneTableWithConditionsOnTwoColumns(
vtkMySQLDatabase *DatabaseConnector,
const std::string & iColumnName,
const std::string & iTableName,
const std::string & iFieldOne,
const std::vector< std::string > & iVectorConditionFieldOne,
const std::string & iFieldTwo,
const std::vector< std::string > &iVectorConditionFieldTwo);
//Select t1 from (select mesh.meshid,coordinate.zcoord from mesh left join
// coordinate
//on mesh.coordidmax = coordinate.coordid where( imagingsessionid = 2 and
//coordinate.zcoord > 20) ) AS t1 INNER JOIN
//(select mesh.meshid,coordinate.zcoord from mesh left join
//coordinate on mesh.coordidmin = coordinate.coordid
//where ( imagingsessionid = 2 and coordinate.zcoord < 20) )
//AS t2 on t1.meshid = t2.meshid;
QGOIO_EXPORT
std::list< unsigned int >
GetColumnForBoundedValue(const std::string & iColumnName,
const std::string & TableName,
const std::string & iImgSessionID,
const std::string & iCoordType,
const std::string & iValue,
vtkMySQLDatabase *DatabaseConnector);
QGOIO_EXPORT
std::list< unsigned int >
GetSpecificValuesEqualToZero(
vtkMySQLDatabase *iDatabaseConnection,
const std::string & iColumnName,
const std::string & iTableName,
const std::vector< std::string > & iVectorConditionFieldOne,
const std::string & iFieldTwo);
template <class TResultsQuery>
inline
TResultsQuery ExecuteSelectQuery(vtkMySQLDatabase *iDatabaseConnector,
const std::string & iQuery)
{
// std::cout << "execute query:" << iQuery << std::endl;
vtkSQLQuery *query = iDatabaseConnector->GetQueryInstance();
TResultsQuery oResults;
typedef typename TResultsQuery::value_type ValueType;
query->SetQuery( iQuery.c_str() );
if ( !query->Execute() )
{
itkGenericExceptionMacro(
<< "Execute select query failed"
<< query->GetLastErrorText() );
iDatabaseConnector->Close();
iDatabaseConnector->Delete();
query->Delete();
return oResults;
}
int NumberOfFields = query->GetNumberOfFields();
while ( query->NextRow() )
{
for ( int k = 0; k < NumberOfFields; k++ )
{
ValueType temp = ss_atoi<ValueType>(query->DataValue(k).ToString());
oResults.push_back( temp );
}
}
query->Delete();
return oResults;
}
template <class T>
T ExecuteSelectQueryOneValue(vtkMySQLDatabase *iDatabaseConnector,
const std::string & iQuery)
{
vtkSQLQuery *query = iDatabaseConnector->GetQueryInstance();
T oResults = ss_atoi<T>("-1");
query->SetQuery( iQuery.c_str() );
if ( !query->Execute() )
{
itkGenericExceptionMacro(
<< "Execute select query failed"
<< query->GetLastErrorText() );
iDatabaseConnector->Close();
iDatabaseConnector->Delete();
query->Delete();
return oResults;
}
if ( query->NextRow() )
{
oResults = ss_atoi<T>(query->DataValue(0).ToString() );
}
query->Delete();
return oResults;
}
// WHERE (iWhereAndConditions[i] = iWhereAndConditions[i+1] and/or ....)
//if only 1 condition: WHERE iWhereAndConditions[i] = iWhereAndConditions[i+1]
QGOIO_EXPORT
std::string WhereAndOrConditions(
const std::vector<std::string> & iWhereAndConditions,
bool iAnd = true);
QGOIO_EXPORT
std::list<unsigned int> GetAllSelectedValuesFromTwoTables(
vtkMySQLDatabase *iDatabaseConnector,
const std::string & iTableOne,
const std::string & iTableTwo,
const std::string & iColumn,
const FieldWithValue & iJoinCondition,
const std::vector<FieldWithValue> & iFieldsWithValues,
bool Distinct = false);
QGOIO_EXPORT
std::vector<std::string> GetAllSelectedValuesFromTwoTables(
vtkMySQLDatabase *iDatabaseConnector,
const std::string & iTableOne,
const std::string & iTableTwo,
const std::vector<std::string> & iListAttributes,
const FieldWithValue & iJoinCondition,
const std::vector<FieldWithValue> & iFieldsWithValues,
std::string iConditionConnector = "AND",
std::string ColumnNameOrder = "");
QGOIO_EXPORT
std::list< unsigned int > GetAllSelectedValuesFromTwoTables(
vtkMySQLDatabase *iDatabaseConnector,
const std::string & iTableOne,
const std::string & iTableTwo,
const std::string & iColumn,
const FieldWithValue & iJoinCondition,
const std::string & iField,
const std::vector<std::string> & iVectorValues,
bool Distinct = false ,
bool NonNULLRows = false);
QGOIO_EXPORT
std::list< unsigned int > GetAllSelectedValuesFromTwoTables(
vtkMySQLDatabase *iDatabaseConnector,
const std::string & iTableOne,
const std::string & iTableTwo,
const std::string & iColumn,
const FieldWithValue & iJoinCondition,
const std::string & iField,
const std::vector<std::string> & iVectorValues,
const FieldWithValue & iAndCondition);
QGOIO_EXPORT
std::list<unsigned int> GetAllSelectedValuesFromTwoTables(
vtkMySQLDatabase *iDatabaseConnector,
const std::string & iTableOne,
const std::string & iTableTwo,
const std::vector<std::string> & iSelectedFields,
const FieldWithValue & iJoinCondition,
const std::string & iField,
const std::string & iValue,
bool NonNULLRows);
QGOIO_EXPORT
std::list< unsigned int > GetDoublonValuesFromTwoTables(
vtkMySQLDatabase* iDatabaseConnector,
const std::string & iTableOne,
const std::string & iTableTwo,
const std::string & iColumn,
const FieldWithValue & iJoinCondition,
const std::string & iField,
const std::vector<std::string> & iVectValues);//, std::string GroupByColumn = "");
QGOIO_EXPORT
int GetMaxValueFromTwoTables(
vtkMySQLDatabase *iDatabaseConnector,
const std::string & iTableOne,
const std::string & iTableTwo,
const std::string & iColumn,
const FieldWithValue & iJoinCondition,
const std::string & iField,
const std::vector<std::string> & iVectorValues,
const FieldWithValue & iAndCondition);
//add the selected fields separated by ',' to the ioQueryStream
//void GetAllSelectedFields(std::stringstream & ioQueryStream,
// std::vector< std::string > iSelectedFields);
//select columnname FROM tablename WHERE field = value order by ASC/DESC limit
// iNumberLimit
QGOIO_EXPORT
std::vector< std::string > GetOrderByWithLimit(
vtkMySQLDatabase *iDatabaseConnector,
const std::string & iColumnName,
const std::string & iTableName,
const std::string & iField,
const std::string & iValue,
bool ASC,
const std::string & iNumberLimit);
QGOIO_EXPORT
std::string GetCoordinateValuesQueryString(
const std::string & iTableName,
const std::string & iField,
const std::string & iValue,
bool iMin);
//get the center of the bounding boxes for tableName with restriction of iField = iValue
QGOIO_EXPORT
std::list< double* > GetCenterBoundingBoxes(
vtkMySQLDatabase *DatabaseConnector,
const std::string & iTableName,
const std::string & iField,
const std::string & iValue);
QGOIO_EXPORT
std::list<unsigned int> GetListValuesFromTwoTablesAndCondition(
vtkMySQLDatabase *iDatabaseConnector,
const std::string & iTableOne,
const std::string & iTableTwo,
const std::string & iColumn,
const FieldWithValue & iJoinCondition,
const std::string & iField,
const std::vector<std::string> & iVectorValues,
const FieldWithValue & iAndCondition);
QGOIO_EXPORT
int NumberOfElementForGivenImagingSessionAndTrace(
vtkMySQLDatabase *DatabaseConnector,
unsigned int iImagingSession,
const std::string & iTrace);
QGOIO_EXPORT
int NumberOfElementForGivenImagingSessionAndTraceForGivenTimePoint(
vtkMySQLDatabase *DatabaseConnector,
unsigned int iImagingSession,
const std::string & iTrace,
int iTimePoint);
/*
QGOIO_EXPORT
int NumberOfTimePointsForGivenImagingSession(
vtkMySQLDatabase *DatabaseConnector,
unsigned int iImagingSession);
*/
#endif
|