/usr/include/OpenMS/METADATA/Digestion.h is in libopenms-dev 1.11.1-5.
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// OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2013.
//
// This software is released under a three-clause BSD license:
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of any author or any participating institution
// may be used to endorse or promote products derived from this software
// without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
// --------------------------------------------------------------------------
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
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// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// --------------------------------------------------------------------------
// $Maintainer: Andreas Bertsch $
// $Authors: Marc Sturm $
// --------------------------------------------------------------------------
#ifndef OPENMS_METADATA_DIGESTION_H
#define OPENMS_METADATA_DIGESTION_H
#include <OpenMS/DATASTRUCTURES/String.h>
#include <OpenMS/METADATA/SampleTreatment.h>
namespace OpenMS
{
/**
@brief Meta information about digestion of a sample
Representation of a digestion.
@ingroup Metadata
*/
class OPENMS_DLLAPI Digestion :
public SampleTreatment
{
public:
/// default constructor
Digestion();
/// copy constructor
Digestion(const Digestion &);
/// destructor
virtual ~Digestion();
/// assignment operator
Digestion & operator=(const Digestion &);
/**
@brief Equality operator
Although this operator takes a reference to a SampleTreatment as argument
it tests for the equality of Tagging instances!
*/
virtual bool operator==(const SampleTreatment & rhs) const;
/// clone method. See SampleTreatment
virtual SampleTreatment * clone() const;
/// returns the enzyme name (default is "")
const String & getEnzyme() const;
/// sets the enzyme name
void setEnzyme(const String & enzyme);
/// returns the digestion time in minutes (default is 0.0)
DoubleReal getDigestionTime() const;
/// sets the digestion time in minutes
void setDigestionTime(DoubleReal digestion_time);
/// return the temperature during digestion in degree C (default is 0.0)
DoubleReal getTemperature() const;
/// sets the temperature during digestion in degree C
void setTemperature(DoubleReal temperature);
/// returns the pH value (default is 0.0)
DoubleReal getPh() const;
/// sets the pH value
void setPh(DoubleReal ph);
protected:
String enzyme_;
DoubleReal digestion_time_;
DoubleReal temperature_;
DoubleReal ph_;
};
} // namespace OpenMS
#endif // OPENMS_METADATA_DIGESTION_H
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