/usr/include/OpenMS/VISUAL/VISUALIZER/PeptideIdentificationVisualizer.h is in libopenms-dev 1.11.1-5.
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// OpenMS -- Open-Source Mass Spectrometry
// --------------------------------------------------------------------------
// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
// ETH Zurich, and Freie Universitaet Berlin 2002-2013.
//
// This software is released under a three-clause BSD license:
// * Redistributions of source code must retain the above copyright
// notice, this list of conditions and the following disclaimer.
// * Redistributions in binary form must reproduce the above copyright
// notice, this list of conditions and the following disclaimer in the
// documentation and/or other materials provided with the distribution.
// * Neither the name of any author or any participating institution
// may be used to endorse or promote products derived from this software
// without specific prior written permission.
// For a full list of authors, refer to the file AUTHORS.
// --------------------------------------------------------------------------
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
//
// --------------------------------------------------------------------------
// $Maintainer: Timo Sachsenberg $
// $Authors: Marc Sturm $
// --------------------------------------------------------------------------
#ifndef OPENMS_VISUAL_VISUALIZER_PEPTIDEIDENTIFICATIONVISUALIZER_H
#define OPENMS_VISUAL_VISUALIZER_PEPTIDEIDENTIFICATIONVISUALIZER_H
//OpenMS
#include <OpenMS/METADATA/PeptideIdentification.h>
#include <OpenMS/VISUAL/VISUALIZER/BaseVisualizer.h>
#include <OpenMS/VISUAL/VISUALIZER/BaseVisualizerGUI.h>
namespace OpenMS
{
class MetaDataBrowser;
/**
@brief Class that displays all meta information for PeptideIdentification objects
This class provides all functionality to view the meta information of an object of type PeptideIdentification.
*/
class OPENMS_GUI_DLLAPI PeptideIdentificationVisualizer :
public BaseVisualizerGUI,
public BaseVisualizer<PeptideIdentification>
{
Q_OBJECT
public:
///Constructor
PeptideIdentificationVisualizer(bool editable = FALSE, QWidget * parent = 0, MetaDataBrowser * caller = 0);
/// Loads the meta data from the object to the viewer. Gets the id of the item in the tree as parameter.
void load(PeptideIdentification & s, int tree_item_id);
public slots:
//Docu in base class
void store();
protected slots:
///Undo the changes made in the GUI.
void undo_();
/**
@brief Updates the tree by calling MetaDataBrowser::updatePeptideHits(PeptideIdentification, int)
Calls MetaDataBrowser::updatePeptideHits(PeptideIdentification, int).<br>
Updates the tree depending of the protein significance threshold.<br>
Only ProteinHits with a score superior or equal to the current threshold will be displayed.
*/
void updateTree_();
protected:
/// Pointer to MetaDataBrowser
MetaDataBrowser * pidv_caller_;
/// The id of the item in the tree
int tree_id_;
///@name Edit fields and buttons
//@{
QLineEdit * identifier_;
QLineEdit * score_type_;
QComboBox * higher_better_;
QLineEdit * identification_threshold_;
//@}
/// Threshold for foltering by score
QLineEdit * filter_threshold_;
};
}
#endif
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