/usr/include/rostlab/blosum62.h is in librostlab3-dev 1.0.20-4.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 | /*
Copyright (C) 2011 Laszlo Kajan, Technical University of Munich, Germany
This file is part of librostlab.
librostlab is free software: you can redistribute it and/or modify
it under the terms of the GNU Lesser General Public License as published by
the Free Software Foundation, either version 3 of the License, or
(at your option) any later version.
This program is distributed in the hope that it will be useful,
but WITHOUT ANY WARRANTY; without even the implied warranty of
MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
GNU Lesser General Public License for more details.
You should have received a copy of the GNU Lesser General Public License
along with this program. If not, see <http://www.gnu.org/licenses/>.
*/
#ifndef BLOSUM62_H
#define BLOSUM62_H
namespace rostlab {
/// BLOSUM62 matrix at a scale of ln(2)/2.0.
/** '*' is column/row 0; other capital letters are in column ( letter & 0x1f ). Columns/rows for non-aa letters such as o and u are 0. The matrix is symmetrical.
*/
extern const signed char blosum62[27][27];
}
#endif // BLOSUM62_H
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