This file is indexed.

/usr/include/sbml/packages/comp/util/SBMLResolverRegistry.h is in libsbml5-dev 5.10.0+dfsg-1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
/**
 * @file    SBMLResolverRegistry.h
 * @brief   Definition of SBMLResolverRegistry, a registry of available resolvers.
 * @author  Frank Bergmann
 *
 * <!--------------------------------------------------------------------------
 * This file is part of libSBML.  Please visit http://sbml.org for more
 * information about SBML, and the latest version of libSBML.
 *
 * Copyright (C) 2013-2014 jointly by the following organizations:
 *     1. California Institute of Technology, Pasadena, CA, USA
 *     2. EMBL European Bioinformatics Institute (EMBL-EBI), Hinxton, UK
 *     3. University of Heidelberg, Heidelberg, Germany
 * 
 * Copyright 2011-2012 jointly by the following organizations:
 *     1. California Institute of Technology, Pasadena, CA, USA
 *     2. EMBL European Bioinformatics Institute (EMBL-EBI), Hinxton, UK
 *
 * This library is free software; you can redistribute it and/or modify it
 * under the terms of the GNU Lesser General Public License as published by
 * the Free Software Foundation.  A copy of the license agreement is provided
 * in the file named "LICENSE.txt" included with this software distribution
 * and also available online as http://sbml.org/software/libsbml/license.html
 * ------------------------------------------------------------------------ -->
 *
 * @class SBMLResolverRegistry
 * @sbmlbrief{comp} Registry of all SBML resolvers.
 *
 * @htmlinclude libsbml-facility-only-warning.html
 *
 * LibSBML provides facilities for resolving SBML documents in various ways
 * from a given URI. Resolvers are implemented as objects derived from the
 * class SBMLResolver.
 *
 * The resolver registry maintains a list of known resolvers and provides
 * methods for discovering them.  It is implemented as a singleton object of
 * class SBMLResolverRegistry.  Callers can use the method
 * SBMLResolverRegistry::getNumResolvers() to find out how many resolvers are
 * registered, then use SBMLResolverRegistry::getResolverByIndex(@if java int
 * index@endif) to iterate over each one;
 *
 * @see SBMLFileResolver
 */

#ifndef SBMLResolverRegistry_h
#define SBMLResolverRegistry_h


#include <sbml/common/sbmlfwd.h>
#include <sbml/packages/comp/util/SBMLResolver.h>


#ifdef __cplusplus

#include <map>
#include <vector>
#include <string>


LIBSBML_CPP_NAMESPACE_BEGIN


class LIBSBML_EXTERN SBMLResolverRegistry
{
public:

  /**
   * Returns the singleton instance for the resolver registry.
   *
   * Prior to using the registry, callers have to obtain a copy of the
   * registry.  This static method provides the means for doing that.
   *
   * @return the singleton for the resolver registry.
   */
  static SBMLResolverRegistry& getInstance();


  /**
   * Adds the given resolver to the registry of SBML resolvers.
   *
   * @param resolver the resolver to add to the registry.
   *
   * @return integer value indicating the success/failure of the operation.
   * @if clike The value is drawn from the enumeration
   * #OperationReturnValues_t. @endif@~ The possible values are:
   * @li @link OperationReturnValues_t#LIBSBML_OPERATION_SUCCESS LIBSBML_OPERATION_SUCCESS @endlink
   * @li @link OperationReturnValues_t#LIBSBML_INVALID_OBJECT LIBSBML_INVALID_OBJECT @endlink
   */
  int addResolver (const SBMLResolver* resolver);


  /**
   * Removes the resolver with the given index.
   * 
   * @param index the index of the resolver to be removed
   *
   * @return integer value indicating the success/failure of the operation.
   * @if clike The value is drawn from the enumeration
   * #OperationReturnValues_t. @endif@~ The possible values are:
   * @li @link OperationReturnValues_t#LIBSBML_OPERATION_SUCCESS LIBSBML_OPERATION_SUCCESS @endlink
   * @li @link OperationReturnValues_t#LIBSBML_INVALID_OBJECT LIBSBML_INVALID_OBJECT @endlink
   */
  int removeResolver(int index);


  /**
   * Returns the resolver with the given index number.
   *
   * Resolvers are given arbitrary index numbers by the registry.  Callers
   * can use the method SBMLResolverRegistry::getNumResolvers() to find
   * out how many resolvers are registered, then use this method to
   * iterate over the list and obtain each one in turn.
   *
   * @param index the zero-based index of the resolver to fetch.
   *
   * @return the resolver with the given index number, or @c NULL if the
   * number is less than @c 0 or there is no resolver at the given index
   * position.
   */
  SBMLResolver* getResolverByIndex(int index) const;


  /**
   * Returns the number of resolvers known by the registry.
   *
   * @return the number of registered resolvers.
   *
   * @see getResolverByIndex(@if java int index@endif)
   */
  int getNumResolvers() const;


  /**
   * Destructor
   */
  virtual ~SBMLResolverRegistry();


  /**
   * Resolves the document for the given URI.
   *
   * @param uri the URI to the target document
   * @param baseUri base URI, in case the URI is a relative one
   *
   * @return  the document, if this resolver can resolve the document or NULL.
   */
  virtual SBMLDocument* resolve(const std::string &uri, const std::string& baseUri="") const;

  
  /**
   * Resolves the full URI for the given URI without actually reading the
   * document.
   *
   * @param uri the URI to the target document
   * @param baseUri base URI, in case the URI is a relative one
   *
   * @return  the full URI to the document, if this resolver can resolve the document or NULL.
   */
  virtual SBMLUri* resolveUri(const std::string &uri, const std::string& baseUri="") const;


protected:

  /** @cond doxygenLibsbmlInternal */
  /**
   * protected constructor, use the getInstance() method to access the registry.
   */
  SBMLResolverRegistry();
  /** @endcond */


protected:
  /** @cond doxygenLibsbmlInternal */
  std::vector<const SBMLResolver*>  mResolvers;
  /** @endcond */
};

LIBSBML_CPP_NAMESPACE_END

#endif /* __cplusplus */

#ifndef SWIG

LIBSBML_CPP_NAMESPACE_BEGIN
BEGIN_C_DECLS

END_C_DECLS
LIBSBML_CPP_NAMESPACE_END

#endif  /* !SWIG */
#endif /* !SBMLResolverRegistry_h */