This file is indexed.

/usr/include/sc/chemistry/qc/basis/sobasis.h is in libsc-dev 2.3.1-16.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
//
// sobasis.h --- definition of the Integral class
//
// Copyright (C) 1998 Limit Point Systems, Inc.
//
// Author: Curtis Janssen <cljanss@limitpt.com>
// Maintainer: LPS
//
// This file is part of the SC Toolkit.
//
// The SC Toolkit is free software; you can redistribute it and/or modify
// it under the terms of the GNU Library General Public License as published by
// the Free Software Foundation; either version 2, or (at your option)
// any later version.
//
// The SC Toolkit is distributed in the hope that it will be useful,
// but WITHOUT ANY WARRANTY; without even the implied warranty of
// MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
// GNU Library General Public License for more details.
//
// You should have received a copy of the GNU Library General Public License
// along with the SC Toolkit; see the file COPYING.LIB.  If not, write to
// the Free Software Foundation, 675 Mass Ave, Cambridge, MA 02139, USA.
//
// The U.S. Government is granted a limited license as per AL 91-7.
//

#ifndef _chemistry_qc_basis_sobasis_h
#define _chemistry_qc_basis_sobasis_h

#ifdef __GNUC__
#pragma interface
#endif

#include <chemistry/qc/basis/basis.h>

namespace sc {

/** SOTransformShell describes how an AO function contributes to an SO
    function in a particular SO shell. */
class SOTransformFunction {
  public:
    /// The coefficient of the AO.
    double coef;
    /// The AO function number.
    int aofunc;
    /// The SO function number.
    int sofunc;
    /// The SO function's irrep.
    int irrep;
};

/** SOTransformShell maintains a list of AO functions contribute to an SO
    function in a particular SO shell.  The information is stored in
    objects of type SOTransformFunction. */
class SOTransformShell {
  public:
    /// The number of the AO shell from which these functions come.
    int aoshell;
    /// The number of AO/SO function pairs contributing.
    int nfunc;
    /// The array of SOTransformFunction objects describing the transform.
    SOTransformFunction *func;
    SOTransformShell();
    ~SOTransformShell();
    /// Add another function to the transform.
    void add_func(int irrep, double coef, int aofunc, int sofunc);
};

/** SOTransform maintains a list of AO shells that are be used
    to compute the SO.  The information is stored in objects of
    type SOTransformShell. */
class SOTransform {
  public:
    int naoshell_allocated;
    /// The number of AO shells that make up this SO shell.
    int naoshell;
    /// The SOTransformShell object for each AO.
    SOTransformShell *aoshell;
    SOTransform();
    ~SOTransform();
    void set_naoshell(int n);
    /// Adds another term to the transform.
    void add_transform(int aoshell, int irrep,
                       double coef, int aofunc, int sofunc);
};

/** A SOBasis object describes the transformation from an atomic orbital
    basis to a symmetry orbital basis.  */
class SOBasis : public RefCount {
  protected:
    Ref<GaussianBasisSet> basis_;
    int nshell_;
    int nirrep_;
    int *ncomp_;
    int **nfunc_;
    int *naofunc_;
    int **funcoff_;

    int *nfunc_in_irrep_;
    int *func_;
    int *irrep_;
    int *func_within_irrep_;

    SOTransform *trans_;

  public:
    /// Create an SOBasis object given a GaussianBasisSet and Integral objects.
    SOBasis(const Ref<GaussianBasisSet> &, const Ref<Integral>&);
    ~SOBasis();

    /// Return the number of shells.
    int nshell() const { return nshell_; }
    /// Return the number of irreps.
    int nirrep() const { return nirrep_; }
    int ncomponent(int iirrep) const { return ncomp_[iirrep]; }
    /// Return the number of functions in the given irrep.
    int nfunction_in_irrep(int irrep) const { return nfunc_in_irrep_[irrep]; }
    /// Return the offset for the first function of the given irrep.
    int function_offset_for_irrep(int irrep) const;
    /// Return the number of functions in the given shell.
    int nfunction(int ishell) const;
    /** Return the number of functions in the AO shell that make up
        the given SO shell. */
    int naofunction(int ishell) const { return naofunc_[ishell]; }
    /// Returns the number of functions in the shell in a given irrep.
    int nfunction(int ishell, int iirrep) const;
    /** Returns the maximum number of functions in a shell (summed over all
        irreps) */
    int max_nfunction_in_shell() const;
    /** Normally, SO shell numbering starts at zero within each irrep.
        This returns an offset to make SO shell numbers unique within the
        shell. */
    int function_offset_within_shell(int ishell, int iirrep) const;

    /** Convert the SO shell number to the overall number of the first
        function within that shell. */
    int function(int ishell);

    /// Convert SO shell and function number within shell to irrep.
    int irrep(int ishell, int ifunc) const;
    /// Convert SO shell and function number to number within irrep.
    int function_within_irrep(int ishell, int ifunc) const;

    /// Return the SOTransform object for the given shell.
    const SOTransform &trans(int i) const { return trans_[i]; }

    void print(std::ostream &o=ExEnv::out0()) const;
};


inline int
SOBasis::function(int ishell)
{
  return func_[ishell];
}

inline int
SOBasis::irrep(int ishell, int ifunc) const
{
  return irrep_[func_[ishell]+ifunc];
}

inline int
SOBasis::function_offset_for_irrep(int irrep) const
{
  int r = 0;
  for (int i=0; i<irrep; i++) {
      r += nfunc_in_irrep_[i];
    }
  return r;
}

inline int
SOBasis::function_within_irrep(int ishell, int ifunc) const
{
  return func_within_irrep_[func_[ishell]+ifunc];
}

inline int
SOBasis::nfunction(int ishell, int iirrep) const
{
  return nfunc_[ishell][iirrep];
}

inline int
SOBasis::function_offset_within_shell(int ishell, int iirrep) const
{
  return funcoff_[ishell][iirrep];
}

}

#endif

// Local Variables:
// mode: c++
// c-file-style: "CLJ"
// End: