This file is indexed.

/usr/include/sofa/component/collision/BarycentricPenalityContact.inl is in libsofa1-dev 1.0~beta4-9.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
/******************************************************************************
*       SOFA, Simulation Open-Framework Architecture, version 1.0 beta 4      *
*                (c) 2006-2009 MGH, INRIA, USTL, UJF, CNRS                    *
*                                                                             *
* This library is free software; you can redistribute it and/or modify it     *
* under the terms of the GNU Lesser General Public License as published by    *
* the Free Software Foundation; either version 2.1 of the License, or (at     *
* your option) any later version.                                             *
*                                                                             *
* This library is distributed in the hope that it will be useful, but WITHOUT *
* ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or       *
* FITNESS FOR A PARTICULAR PURPOSE. See the GNU Lesser General Public License *
* for more details.                                                           *
*                                                                             *
* You should have received a copy of the GNU Lesser General Public License    *
* along with this library; if not, write to the Free Software Foundation,     *
* Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301 USA.          *
*******************************************************************************
*                               SOFA :: Modules                               *
*                                                                             *
* Authors: The SOFA Team and external contributors (see Authors.txt)          *
*                                                                             *
* Contact information: contact@sofa-framework.org                             *
******************************************************************************/
#ifndef SOFA_COMPONENT_COLLISION_BARYCENTRICPENALITYCONTACT_INL
#define SOFA_COMPONENT_COLLISION_BARYCENTRICPENALITYCONTACT_INL

#include <sofa/component/collision/BarycentricPenalityContact.h>

namespace sofa
{

namespace component
{

namespace collision
{

using namespace sofa::defaulttype;
using namespace core::componentmodel::collision;

template < class TCollisionModel1, class TCollisionModel2, class ResponseDataTypes >
BarycentricPenalityContact<TCollisionModel1,TCollisionModel2,ResponseDataTypes>::BarycentricPenalityContact(CollisionModel1* model1, CollisionModel2* model2, Intersection* intersectionMethod)
: model1(model1), model2(model2), intersectionMethod(intersectionMethod), ff(NULL), parent(NULL)
{
    mapper1.setCollisionModel(model1);
    mapper2.setCollisionModel(model2);
}

template < class TCollisionModel1, class TCollisionModel2, class ResponseDataTypes >
BarycentricPenalityContact<TCollisionModel1,TCollisionModel2,ResponseDataTypes>::~BarycentricPenalityContact()
{
}


template < class TCollisionModel1, class TCollisionModel2, class ResponseDataTypes >
void BarycentricPenalityContact<TCollisionModel1,TCollisionModel2,ResponseDataTypes>::cleanup()
{
    if (ff!=NULL)
    {
        ff->cleanup();
        if (parent!=NULL) parent->removeObject(ff);
        delete ff;
        parent = NULL;
        ff = NULL;
        mapper1.cleanup();
        mapper2.cleanup();
    }
}

template < class TCollisionModel1, class TCollisionModel2, class ResponseDataTypes >
void BarycentricPenalityContact<TCollisionModel1,TCollisionModel2,ResponseDataTypes>::setDetectionOutputs(OutputVector* o)
{
    TOutputVector& outputs = *static_cast<TOutputVector*>(o);
    const bool printLog = this->f_printLog.getValue();
    if (ff==NULL)
    {
        MechanicalState1* mstate1 = mapper1.createMapping();
        MechanicalState2* mstate2 = mapper2.createMapping();
        ff = new ResponseForceField(mstate1,mstate2);
        ff->setName( getName() );
    }

    int insize = outputs.size();

    // old index for each contact
    // >0 indicate preexisting contact
    // 0  indicate new contact
    // -1 indicate ignored duplicate contact
    std::vector<int> oldIndex(insize);

    int nbnew = 0;

    for (int i=0; i<insize; i++)
    {
        DetectionOutput* o = &outputs[i];
        // find this contact in contactIndex, possibly creating a new entry initialized by 0
        int& index = contactIndex[o->id];
        if (index < 0) // duplicate contact
        {
            int i2 = -1-index;
            DetectionOutput* o2 = &outputs[i2];
            if (o2->value <= o->value)
            {
                // current contact is ignored
                oldIndex[i] = -1;
                continue;
            }
            else
            {
                // previous contact is replaced
                oldIndex[i] = oldIndex[i2];
                oldIndex[i2] = -1;
            }
        }
        else
        {
            oldIndex[i] = index;
            if (!index)
            {
                ++nbnew;
                if (printLog) sout << "BarycentricPenalityContact: New contact "<<o->id<<sendl;
            }
        }
        index = -1-i; // save this index as a negative value in contactIndex map.
    }

    // compute new index of each contact
    std::vector<int> newIndex(insize);
    // number of final contacts used in the response
    int size = 0;
    for (int i=0; i<insize; i++)
    {
        if (oldIndex[i] >= 0)
        {
            ++size;
            newIndex[i] = size;
        }
    }

    // update contactMap
    for (ContactIndexMap::iterator it = contactIndex.begin(), itend = contactIndex.end(); it != itend; )
    {
        int& index = it->second;
        if (index >= 0)
        {
            if (printLog) sout << "BarycentricPenalityContact: Removed contact "<<it->first<<sendl;
            ContactIndexMap::iterator oldit = it;
            ++it;
            contactIndex.erase(oldit);
        }
        else
        {
            index = newIndex[-1-index]; // write the final contact index
            ++it;
        }
    }
    if (printLog) sout << "BarycentricPenalityContact: "<<insize<<" input contacts, "<<size<<" contacts used for response ("<<nbnew<<" new)."<<sendl;

    //int size = contacts.size();
    ff->clear(size);
    mapper1.resize(size);
    mapper2.resize(size);
    //int i = 0;
    const double d0 = intersectionMethod->getContactDistance() + model1->getProximity() + model2->getProximity(); // - 0.001;
    //for (std::vector<DetectionOutput>::iterator it = outputs.begin(); it!=outputs.end(); it++)
    //{
    //    DetectionOutput* o = &*it;
    for (int i=0; i<insize; i++)
    {
        int index = oldIndex[i];
        if (index < 0) continue; // this contact is ignored
        DetectionOutput* o = &outputs[i];
        CollisionElement1 elem1(o->elem.first);
        CollisionElement2 elem2(o->elem.second);
        int index1 = elem1.getIndex();
        int index2 = elem2.getIndex();
	typename DataTypes1::Real r1 = 0.0;
        typename DataTypes2::Real r2 = 0.0;
        // Create mapping for first point
        index1 = mapper1.addPoint(o->point[0], index1, r1);
        // Create mapping for second point
        index2 = mapper2.addPoint(o->point[1], index2, r2);

        double distance = d0 + r1 + r2;
        double stiffness = (elem1.getContactStiffness() * elem2.getContactStiffness());
	if (distance != 0.0) stiffness /= distance;

        double mu_v = (elem1.getContactFriction() + elem2.getContactFriction());
        ff->addContact(index1, index2, elem1.getIndex(), elem2.getIndex(), o->normal, distance, stiffness, mu_v/* *distance */, mu_v, index);
    }
    // Update mappings
    mapper1.update();
    mapper2.update();
}

template < class TCollisionModel1, class TCollisionModel2, class ResponseDataTypes >
void BarycentricPenalityContact<TCollisionModel1,TCollisionModel2,ResponseDataTypes>::createResponse(core::objectmodel::BaseContext* group)
{
    if (ff!=NULL)
    {
        if (parent!=NULL)
        {
            parent->removeObject(this);
            parent->removeObject(ff);
        }
        parent = group;
        if (parent!=NULL)
        {
            //sout << "Attaching contact response to "<<parent->getName()<<sendl;
            parent->addObject(this);
            parent->addObject(ff);
        }
    }
}

template < class TCollisionModel1, class TCollisionModel2, class ResponseDataTypes >
void BarycentricPenalityContact<TCollisionModel1,TCollisionModel2,ResponseDataTypes>::removeResponse()
{
    if (ff!=NULL)
    {
        if (parent!=NULL)
        {
            //sout << "Removing contact response from "<<parent->getName()<<sendl;
            parent->removeObject(this);
            parent->removeObject(ff);
        }
        parent = NULL;
    }
}

template < class TCollisionModel1, class TCollisionModel2, class ResponseDataTypes >
void BarycentricPenalityContact<TCollisionModel1,TCollisionModel2,ResponseDataTypes>::draw()
{
    //	if (ff!=NULL)
    //		ff->draw();
}

} // namespace collision

} // namespace component

} // namespace sofa

#endif