/usr/lib/x86_64-linux-gnu/perl5/5.20/TFBS/PatternGen/MEME/Motif.pm is in libtfbs-perl 0.6.1+dfsg-1+b1.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 | # TFBS module for TFBS::PatternGen::AnnSpec::Motif
#
# Copyright Boris Lenhard and Wynand Alkema
#
# You may distribute this module under the same terms as perl itself
#
# POD
# POD
=head1 NAME
TFBS::PatternGen::AnnSpec::Motif - class for unprocessed motifs and associated
numerical scores created by the Gibbs program
=head1 SYNOPSIS
=head1 DESCRIPTION
TFBS::PatternGen::MEME::Motif is used to store and manipulate unprocessed
motifs and associated numerical scores created by the meme program. You do not
normally want to create a TFBS::PatternGen::MEME::Motif yourself. They are created
by running TFBS::PatternGen::MEME
=head1 FEEDBACK
Please send bug reports and other comments to the author.
=head1 AUTHOR - Wynand Alkema
Wynand Alkema E<lt>Wynand.Alkema@cgb.ki.seE<gt>
=head1 APPENDIX
The rest of the documentation details each of the object
methods. Internal methods are preceded with an underscore.
=cut
# the code begins here:
package TFBS::PatternGen::MEME::Motif;
use vars qw(@ISA);
use strict;
use TFBS::Matrix::PFM;
use TFBS::PatternGen::Motif::Matrix;
@ISA = qw(TFBS::PatternGen::Motif::Matrix);
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