/usr/share/octave/packages/odepkg-0.8.4/odepkg_testsuite_implakzo.m is in octave-odepkg 0.8.4-2.
This file is owned by root:root, with mode 0o644.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 | %# Copyright (C) 2007-2012, Thomas Treichl <treichl@users.sourceforge.net>
%# OdePkg - A package for solving ordinary differential equations and more
%#
%# This program is free software; you can redistribute it and/or modify
%# it under the terms of the GNU General Public License as published by
%# the Free Software Foundation; either version 2 of the License, or
%# (at your option) any later version.
%#
%# This program is distributed in the hope that it will be useful,
%# but WITHOUT ANY WARRANTY; without even the implied warranty of
%# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
%# GNU General Public License for more details.
%#
%# You should have received a copy of the GNU General Public License
%# along with this program; If not, see <http://www.gnu.org/licenses/>.
%# -*- texinfo -*-
%# @deftypefn {Function File} {[@var{solution}] =} odepkg_testsuite_implakzo (@var{@@solver}, @var{reltol})
%#
%# If this function is called with two input arguments and the first input argument @var{@@solver} is a function handle describing an OdePkg solver and the second input argument @var{reltol} is a double scalar describing the relative error tolerance then return a cell array @var{solution} with performance informations about the chemical AKZO Nobel testsuite of implicit differential algebraic equations after solving (IDE--test).
%#
%# Run examples with the command
%# @example
%# demo odepkg_testsuite_implakzo
%# @end example
%#
%# This function has been ported from the "Test Set for IVP solvers" which is developed by the INdAM Bari unit project group "Codes and Test Problems for Differential Equations", coordinator F. Mazzia.
%# @end deftypefn
%#
%# @seealso{odepkg}
function vret = odepkg_testsuite_implakzo (vhandle, vrtol)
if (nargin ~= 2) %# Check number and types of all input arguments
help ('odepkg_testsuite_implakzo');
error ('OdePkg:InvalidArgument', ...
'Number of input arguments must be exactly two');
elseif (~isa (vhandle, 'function_handle') || ~isscalar (vrtol))
print_usage;
end
vret{1} = vhandle; %# The handle for the solver that is used
vret{2} = vrtol; %# The value for the realtive tolerance
vret{3} = vret{2}; %# The value for the absolute tolerance
vret{4} = vret{2}; %# The value for the first time step
%# Write a debug message on the screen, because this testsuite function
%# may be called more than once from a loop over all solvers present
fprintf (1, ['Testsuite AKZO, testing solver %7s with relative', ...
' tolerance %2.0e\n'], func2str (vret{1}), vrtol); fflush (1);
%# Setting the integration algorithms option values
vstart = 0.0; %# The point of time when solving is started
vstop = 180.0; %# The point of time when solving is stoped
[vinity, vinityd] = odepkg_testsuite_implakzoinit; %# The initial values
vopt = odeset ('Refine', 0, 'RelTol', vret{2}, 'AbsTol', vret{3}, ...
'InitialStep', vret{4}, 'Stats', 'on', 'NormControl', 'off', ...
'Jacobian', @odepkg_testsuite_implakzojac, 'MaxStep', vstop-vstart);
%# ,'OutputFcn', @odeplot, 'MaxStep', 1);
%# Calculate the algorithm, start timer and do solving
tic; vsol = feval (vhandle, @odepkg_testsuite_implakzofun, ...
[vstart, vstop], vinity, vinityd', vopt);
vret{12} = toc; %# The value for the elapsed time
vref = odepkg_testsuite_implakzoref; %# Get the reference solution vector
if (exist ('OCTAVE_VERSION') ~= 0)
vlst = vsol.y(end,:);
else
vlst = vsol.y(:,end);
end
vret{5} = odepkg_testsuite_calcmescd (vlst, vref, vret{3}, vret{2});
vret{6} = odepkg_testsuite_calcscd (vlst, vref, vret{3}, vret{2});
vret{7} = vsol.stats.nsteps + vsol.stats.nfailed; %# The value for all evals
vret{8} = vsol.stats.nsteps; %# The value for success evals
vret{9} = vsol.stats.nfevals; %# The value for fun calls
vret{10} = vsol.stats.npds; %# The value for partial derivations
vret{11} = vsol.stats.ndecomps; %# The value for LU decompositions
%# Return the results for the for the chemical AKZO problem
function res = odepkg_testsuite_implakzofun (t, y, yd, varargin)
k1 = 18.7; k2 = 0.58; k3 = 0.09; k4 = 0.42;
kbig = 34.4; kla = 3.3; ks = 115.83; po2 = 0.9;
hen = 737;
r1 = k1 * y(1)^4 * sqrt (y(2));
r2 = k2 * y(3) * y(4);
r3 = k2 / kbig * y(1) * y(5);
r4 = k3 * y(1) * y(4)^2;
r5 = k4 * y(6)^2 * sqrt (y(2));
fin = kla * (po2 / hen - y(2));
res(1,1) = -2 * r1 + r2 - r3 - r4 - yd(1);
res(2,1) = -0.5 * r1 - r4 - 0.5 * r5 + fin - yd(2);
res(3,1) = r1 - r2 + r3 - yd(3);
res(4,1) = - r2 + r3 - 2 * r4 - yd(4);
res(5,1) = r2 - r3 + r5 - yd(5);
res(6,1) = ks * y(1) * y(4) - y(6) - yd(6);
%# Return the INITIAL values for the chemical AKZO problem
function [y0, yd0] = odepkg_testsuite_implakzoinit ()
y0 = [0.444, 0.00123, 0, 0.007, 0, 115.83 * 0.444 * 0.007];
yd0 = [-0.051, -0.014, 0.025, 0, 0.002, 0];
%# Return the JACOBIAN matrix for the chemical AKZO problem
function [dfdy, dfdyd] = odepkg_testsuite_implakzojac (t, y, varargin)
k1 = 18.7; k2 = 0.58; k3 = 0.09; k4 = 0.42;
kbig = 34.4; kla = 3.3; ks = 115.83; po2 = 0.9;
hen = 737;
%# if (y(2) <= 0)
%# error ('odepkg_testsuite_implakzojac: Second input argument is negative');
%# end
dfdy = zeros (6, 6);
r11 = 4 * k1 * y(1)^3 * sqrt (y(2));
r12 = 0.5 * k1 * y(1)^4 / sqrt (y(2));
r23 = k2 * y(4);
r24 = k2 * y(3);
r31 = (k2 / kbig) * y(5);
r35 = (k2 / kbig) * y(1);
r41 = k3 * y(4)^2;
r44 = 2 * k3 * y(1) * y(4);
r52 = 0.5 * k4 * y(6)^2 / sqrt (y(2));
r56 = 2 * k4 * y(6) * sqrt (y(2));
fin2 = -kla;
dfdy(1,1) = -2 * r11 - r31 - r41;
dfdy(1,2) = -2 * r12;
dfdy(1,3) = r23;
dfdy(1,4) = r24 - r44;
dfdy(1,5) = -r35;
dfdy(2,1) = -0.5 * r11 - r41;
dfdy(2,2) = -0.5 * r12 - 0.5 * r52 + fin2;
dfdy(2,4) = -r44;
dfdy(2,6) = -0.5 * r56;
dfdy(3,1) = r11 + r31;
dfdy(3,2) = r12;
dfdy(3,3) = -r23;
dfdy(3,4) = -r24;
dfdy(3,5) = r35;
dfdy(4,1) = r31 - 2 * r41;
dfdy(4,3) = -r23;
dfdy(4,4) = -r24 - 2 * r44;
dfdy(4,5) = r35;
dfdy(5,1) = -r31;
dfdy(5,2) = r52;
dfdy(5,3) = r23;
dfdy(5,4) = r24;
dfdy(5,5) = -r35;
dfdy(5,6) = r56;
dfdy(6,1) = ks * y(4);
dfdy(6,4) = ks * y(1);
dfdy(6,6) = -1;
dfdyd = - [ 1, 0, 0, 0, 0, 0;
0, 1, 0, 0, 0, 0;
0, 0, 1, 0, 0, 0;
0, 0, 0, 1, 0, 0;
0, 0, 0, 0, 1, 0;
0, 0, 0, 0, 0, 1 ];
%# For the implicit form of the chemical AKZO Nobel problem a mass
%# matrix is not needed. This mass matrix is needed if the problem
%# is formulated in explicit form (cf. odepkg_testsuite_cemakzo.m).
%# function mass = odepkg_testsuite_implakzomass (t, y, varargin)
%# mass = [ 1, 0, 0, 0, 0, 0;
%# 0, 1, 0, 0, 0, 0;
%# 0, 0, 1, 0, 0, 0;
%# 0, 0, 0, 1, 0, 0;
%# 0, 0, 0, 0, 1, 0;
%# 0, 0, 0, 0, 0, 0 ];
%# Return the REFERENCE values for the chemical AKZO problem
function y = odepkg_testsuite_implakzoref ()
y(1,1) = 0.11507949206617e+0;
y(2,1) = 0.12038314715677e-2;
y(3,1) = 0.16115628874079e+0;
y(4,1) = 0.36561564212492e-3;
y(5,1) = 0.17080108852644e-1;
y(6,1) = 0.48735313103074e-2;
%!demo
%! vsolver = {@odebdi};
%! for vcnt=1:length (vsolver)
%! vakzo{vcnt,1} = odepkg_testsuite_implakzo (vsolver{vcnt}, 1e-7);
%! end
%! vakzo
%# Local Variables: ***
%# mode: octave ***
%# End: ***
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