/usr/share/octave/packages/odepkg-0.8.4/odepkg_testsuite_oregonator.m is in octave-odepkg 0.8.4-2.
This file is owned by root:root, with mode 0o644.
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%# OdePkg - A package for solving ordinary differential equations and more
%#
%# This program is free software; you can redistribute it and/or modify
%# it under the terms of the GNU General Public License as published by
%# the Free Software Foundation; either version 2 of the License, or
%# (at your option) any later version.
%#
%# This program is distributed in the hope that it will be useful,
%# but WITHOUT ANY WARRANTY; without even the implied warranty of
%# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
%# GNU General Public License for more details.
%#
%# You should have received a copy of the GNU General Public License
%# along with this program; If not, see <http://www.gnu.org/licenses/>.
%# -*- texinfo -*-
%# @deftypefn {Function File} {[@var{solution}] =} odepkg_testsuite_oregonator (@var{@@solver}, @var{reltol})
%#
%# If this function is called with two input arguments and the first input argument @var{@@solver} is a function handle describing an OdePkg solver and the second input argument @var{reltol} is a double scalar describing the relative error tolerance then return a cell array @var{solution} with performance informations about the OREGONATOR testsuite of ordinary differential equations after solving (ODE--test).
%#
%# Run examples with the command
%# @example
%# demo odepkg_testsuite_oregonator
%# @end example
%#
%# This function has been ported from the "Test Set for IVP solvers" which is developed by the INdAM Bari unit project group "Codes and Test Problems for Differential Equations", coordinator F. Mazzia.
%# @end deftypefn
%#
%# @seealso{odepkg}
function vret = odepkg_testsuite_oregonator (vhandle, vrtol)
if (nargin ~= 2) %# Check number and types of all input arguments
help ('odepkg_testsuite_oregonator');
error ('OdePkg:InvalidArgument', ...
'Number of input arguments must be exactly two');
elseif (~isa (vhandle, 'function_handle') || ~isscalar (vrtol))
usage ('odepkg_testsuite_oregonator (@solver, reltol)');
end
vret{1} = vhandle; %# The name for the solver that is used
vret{2} = vrtol; %# The value for the realtive tolerance
vret{3} = vret{2}; %# The value for the absolute tolerance
vret{4} = vret{2} * 10^(-2); %# The value for the first time step
%# Write a debug message on the screen, because this testsuite function
%# may be called more than once from a loop over all solvers present
fprintf (1, ['Testsuite OREGONATOR, testing solver %7s with relative', ...
' tolerance %2.0e\n'], func2str (vret{1}), vrtol); fflush (1);
%# Setting the integration algorithms option values
vstart = 0.0; %# The point of time when solving is started
vstop = 360.0; %# The point of time when solving is stoped
vinit = odepkg_testsuite_oregonatorinit; %# The initial values
vopt = odeset ('Refine', 0, 'RelTol', vret{2}, 'AbsTol', vret{3}, ...
'InitialStep', vret{4}, 'Stats', 'on', 'NormControl', 'off', ...
'Jacobian', @odepkg_testsuite_oregonatorjac, 'MaxStep', vstop-vstart);
%# Calculate the algorithm, start timer and do solving
tic; vsol = feval (vhandle, @odepkg_testsuite_oregonatorfun, ...
[vstart, vstop], vinit, vopt);
vret{12} = toc; %# The value for the elapsed time
vref = odepkg_testsuite_oregonatorref; %# Get the reference solution vector
if (exist ('OCTAVE_VERSION') ~= 0)
vlst = vsol.y(end,:);
else
vlst = vsol.y(:,end);
end
vret{5} = odepkg_testsuite_calcmescd (vlst, vref, vret{3}, vret{2});
vret{6} = odepkg_testsuite_calcscd (vlst, vref, vret{3}, vret{2});
vret{7} = vsol.stats.nsteps + vsol.stats.nfailed; %# The value for all evals
vret{8} = vsol.stats.nsteps; %# The value for success evals
vret{9} = vsol.stats.nfevals; %# The value for fun calls
vret{10} = vsol.stats.npds; %# The value for partial derivations
vret{11} = vsol.stats.ndecomps; %# The value for LU decompositions
%# Returns the results for the OREGONATOR problem
function f = odepkg_testsuite_oregonatorfun (t, y, varargin)
f(1,1) = 77.27 * (y(2) + y(1) * (1.0 - 8.375e-6 * y(1) - y(2)));
f(2,1) = (y(3) - (1.0 + y(1)) * y(2)) / 77.27;
f(3,1) = 0.161 * (y(1) - y(3));
%# Returns the INITIAL values for the OREGONATOR problem
function vinit = odepkg_testsuite_oregonatorinit ()
vinit = [1, 2, 3];
%# Returns the JACOBIAN matrix for the OREGONATOR problem
function dfdy = odepkg_testsuite_oregonatorjac (t, y, varargin)
dfdy(1,1) = 77.27 * (1.0 - 2.0 * 8.375e-6 * y(1) - y(2));
dfdy(1,2) = 77.27 * (1.0 - y(1));
dfdy(1,3) = 0.0;
dfdy(2,1) = -y(2) / 77.27;
dfdy(2,2) = -(1.0 + y(1)) / 77.27;
dfdy(2,3) = 1.0 / 77.27;
dfdy(3,1) = 0.161;
dfdy(3,2) = 0.0;
dfdy(3,3) = -0.161;
%# Returns the REFERENCE values for the OREGONATOR problem
function y = odepkg_testsuite_oregonatorref ()
y(1,1) = 0.10008148703185e+1;
y(1,2) = 0.12281785215499e+4;
y(1,3) = 0.13205549428467e+3;
%!demo
%! %% vsolver = {@ode23, @ode45, @ode54, @ode78, ...
%! %% @odebda, @oders, @ode2r, @ode5r, @odesx};
%! vsolver = {@odebda, @oders, @ode2r, @ode5r, @odesx};
%! for vcnt=1:length (vsolver)
%! voreg{vcnt,1} = odepkg_testsuite_oregonator (vsolver{vcnt}, 1e-7);
%! end
%! voreg
%# Local Variables: ***
%# mode: octave ***
%# End: ***
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