/usr/lib/R/site-library/biovizBase/help/AnIndex is in r-bioc-biovizbase 1.12.3-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 | biovizBase-package biovizBase-package
addStepping addStepping-method
addStepping,GenomicRanges-method addStepping-method
biovizBase biovizBase-package
blind.pal.info colorBlindSafePal
brewer.pal.blind.info colorBlindSafePal
colorBlindSafePal colorBlindSafePal
containLetters containLetters
CRC CRC
crc.gr CRC
crc1.GeRL crc1.GeRL
crunch crunch-method
crunch,BamFile-method crunch-method
crunch,GAlignments-method crunch-method
crunch,TranscriptDb-method crunch-method
darned_hg19_subset500 darned_hg19_subset500
dichromat.pal.blind.info colorBlindSafePal
estimateCoverage estimateCoverage-method
estimateCoverage,BamFile-method estimateCoverage-method
flatGrl flatGrl
GCcontent GCcontent
genBlindPalInfo colorBlindSafePal
genBrewerBlindPalInfo colorBlindSafePal
genDichromatPalInfo colorBlindSafePal
genesymbol genesymbol
getBioColor getBioColor
getFormalNames getFormalNames
getGaps getGaps
getGaps,GRanges-method getGaps
getIdeoGR getIdeoGR
getIdeogram getIdeogram
getScale getScale
getXLab labs
getXLab,GAlignments-method labs
getXLab,GRanges-method labs
getXLab,GRangesList-method labs
getXLab-method labs
getXScale scale
getXScale,GRanges-method scale
getYLab labs
getYLab,TranscriptDb-method labs
hg19Ideogram hg19Ideogram
hg19IdeogramCyto hg19IdeogramCyto
hg19sub CRC
ideo ideo
ideoCyto ideoCyto
isIdeogram isIdeogram
isJunctionRead isMatchedWithModel
isMatchedWithModel isMatchedWithModel
isSimpleIdeogram isSimpleIdeogram
is_coord_genome transform
is_coord_truncate_gaps shrinkageFun-method
maxGap maxGap-method
maxGap,GenomicRanges-method maxGap-method
mold mold-method
mold,eSet-method mold-method
mold,ExpressionSet-method mold-method
mold,GRanges-method mold-method
mold,GRangesList-method mold-method
mold,IRanges-method mold-method
mold,matrix-method mold-method
mold,Rle-method mold-method
mold,RleList-method mold-method
mold,Seqinfo-method mold-method
mold,SummarizedExperiment-method mold-method
mold,Views-method mold-method
mold,VRanges-method mold-method
mut.gr CRC
parseArgsForAes aes-utils
parseArgsForNonAes aes-utils
pileupAsGRanges pileupAsGRanges
pileupGRangesAsVariantTable pileupGRangesAsVariantTable
plotColorLegend plotColorLegend
showColor showColor
shrinkageFun shrinkageFun-method
shrinkageFun,GenomicRanges-method shrinkageFun-method
shrinkageFun,IRanges-method shrinkageFun-method
splitByFacets splitByFacets-method
splitByFacets,GRanges,formula-method splitByFacets-method
splitByFacets,GRanges,GRanges-method splitByFacets-method
splitByFacets,GRanges,missing-method splitByFacets-method
splitByFacets,GRanges,NULL-method splitByFacets-method
strip_formula_dots strip_formula_dots
subsetArgsByFormals subsetArgsByFormals
transformDfToGr transform
transformGRangesForEvenSpace transformGRangesForEvenSpace
transformToArch transform
transformToArch,GRanges-method transform
transformToBarInCircle transform
transformToCircle transform
transformToDf transform
transformToDf,GRanges-method transform
transformToDf-method transform
transformToGenome transform
transformToGenome,GRanges-method transform
transformToGenome,GRangesList-method transform
transformToLinkInCircle transform
transformToRectInCircle transform
transformToSegInCircle transform
|