/usr/lib/R/site-library/Rsamtools/ is in r-bioc-rsamtools 1.16.1-2.
This file is owned by root:root, with mode 0o755.
| File | Mime Type | Owner | Mode | Size |
|---|---|---|---|---|
..
|
||||
/usr/lib/R/site-library/Rsamtools/DESCRIPTION
|
text/plain | root:root | 0o644 | 1.3 KB |
/usr/lib/R/site-library/Rsamtools/INDEX
|
text/plain | root:root | 0o644 | 2.0 KB |
/usr/lib/R/site-library/Rsamtools/Meta/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Rsamtools/Meta/Rd.rds
|
application/gzip | root:root | 0o644 | 2.7 KB |
/usr/lib/R/site-library/Rsamtools/Meta/hsearch.rds
|
application/gzip | root:root | 0o644 | 2.8 KB |
/usr/lib/R/site-library/Rsamtools/Meta/links.rds
|
application/gzip | root:root | 0o644 | 1.9 KB |
/usr/lib/R/site-library/Rsamtools/Meta/nsInfo.rds
|
application/gzip | root:root | 0o644 | 696 bytes |
/usr/lib/R/site-library/Rsamtools/Meta/package.rds
|
application/gzip | root:root | 0o644 | 1.3 KB |
/usr/lib/R/site-library/Rsamtools/Meta/vignette.rds
|
application/gzip | root:root | 0o644 | 283 bytes |
/usr/lib/R/site-library/Rsamtools/NAMESPACE
|
text/plain | root:root | 0o644 | 1.2 KB |
/usr/lib/R/site-library/Rsamtools/NEWS
|
text/plain | root:root | 0o644 | 9.2 KB |
/usr/lib/R/site-library/Rsamtools/R/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Rsamtools/R/Rsamtools
|
text/plain | root:root | 0o644 | 1.0 KB |
/usr/lib/R/site-library/Rsamtools/R/Rsamtools.rdb
|
application/octet-stream | root:root | 0o644 | 336.3 KB |
/usr/lib/R/site-library/Rsamtools/R/Rsamtools.rdx
|
application/gzip | root:root | 0o644 | 5.2 KB |
/usr/lib/R/site-library/Rsamtools/doc/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Rsamtools/doc/Rsamtools-Overview.R
|
text/plain | root:root | 0o644 | 9.4 KB |
/usr/lib/R/site-library/Rsamtools/doc/Rsamtools-Overview.Rnw
|
text/x-tex | root:root | 0o644 | 19.7 KB |
/usr/lib/R/site-library/Rsamtools/doc/Rsamtools-Overview.pdf
|
application/pdf | root:root | 0o644 | 157.6 KB |
/usr/lib/R/site-library/Rsamtools/doc/Rsamtools-UsingCLibraries.R
|
text/plain | root:root | 0o644 | 221 bytes |
/usr/lib/R/site-library/Rsamtools/doc/Rsamtools-UsingCLibraries.Rnw
|
text/x-c | root:root | 0o644 | 3.2 KB |
/usr/lib/R/site-library/Rsamtools/doc/Rsamtools-UsingCLibraries.pdf
|
application/pdf | root:root | 0o644 | 89.0 KB |
/usr/lib/R/site-library/Rsamtools/doc/index.html
|
text/html | root:root | 0o644 | 1.7 KB |
/usr/lib/R/site-library/Rsamtools/extdata/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Rsamtools/extdata/ce2dict1.fa
|
text/plain | root:root | 0o644 | 176 bytes |
/usr/lib/R/site-library/Rsamtools/extdata/ce2dict1.fa.fai
|
text/plain | root:root | 0o644 | 112 bytes |
/usr/lib/R/site-library/Rsamtools/extdata/ex1.bam
|
application/gzip | root:root | 0o644 | 123.6 KB |
/usr/lib/R/site-library/Rsamtools/extdata/ex1.bam.bai
|
application/octet-stream | root:root | 0o644 | 72 bytes |
/usr/lib/R/site-library/Rsamtools/extdata/ex1.bcf
|
application/gzip | root:root | 0o644 | 72.9 KB |
/usr/lib/R/site-library/Rsamtools/extdata/ex1.bcf.bci
|
application/gzip | root:root | 0o644 | 77 bytes |
/usr/lib/R/site-library/Rsamtools/extdata/ex1.sam
|
text/plain | root:root | 0o644 | 546.3 KB |
/usr/lib/R/site-library/Rsamtools/extdata/example.gtf.gz
|
application/gzip | root:root | 0o644 | 3.7 KB |
/usr/lib/R/site-library/Rsamtools/extdata/example.gtf.gz.tbi
|
application/gzip | root:root | 0o644 | 259 bytes |
/usr/lib/R/site-library/Rsamtools/extdata/example_from_SAM_Spec.bam
|
application/gzip | root:root | 0o644 | 333 bytes |
/usr/lib/R/site-library/Rsamtools/extdata/example_from_SAM_Spec.bam.bai
|
application/octet-stream | root:root | 0o644 | 96 bytes |
/usr/lib/R/site-library/Rsamtools/extdata/example_from_SAM_Spec.sam
|
text/plain | root:root | 0o644 | 322 bytes |
/usr/lib/R/site-library/Rsamtools/extdata/olaps.Rda
|
application/gzip | root:root | 0o644 | 1.6 MB |
/usr/lib/R/site-library/Rsamtools/extdata/pileup.txt
|
text/plain | root:root | 0o644 | 135.3 KB |
/usr/lib/R/site-library/Rsamtools/extdata/samtools-github.txt
|
text/plain | root:root | 0o644 | 31 bytes |
/usr/lib/R/site-library/Rsamtools/extdata/slxMaq09_urls.txt
|
text/plain | root:root | 0o644 | 2.7 KB |
/usr/lib/R/site-library/Rsamtools/extdata/tophat/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Rsamtools/extdata/tophat/README
|
text/plain | root:root | 0o644 | 36 bytes |
/usr/lib/R/site-library/Rsamtools/extdata/tophat/accepted_hits.sam
|
text/plain | root:root | 0o644 | 35.2 KB |
/usr/lib/R/site-library/Rsamtools/extdata/tophat/coverage.wig
|
text/plain | root:root | 0o644 | 4.3 KB |
/usr/lib/R/site-library/Rsamtools/extdata/tophat/junctions.bed
|
text/plain | root:root | 0o644 | 196 bytes |
/usr/lib/R/site-library/Rsamtools/help/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Rsamtools/help/AnIndex
|
text/plain | root:root | 0o644 | 9.3 KB |
/usr/lib/R/site-library/Rsamtools/help/Rsamtools.rdb
|
application/octet-stream | root:root | 0o644 | 143.8 KB |
/usr/lib/R/site-library/Rsamtools/help/Rsamtools.rdx
|
application/gzip | root:root | 0o644 | 775 bytes |
/usr/lib/R/site-library/Rsamtools/help/aliases.rds
|
application/gzip | root:root | 0o644 | 1.9 KB |
/usr/lib/R/site-library/Rsamtools/help/paths.rds
|
application/gzip | root:root | 0o644 | 362 bytes |
/usr/lib/R/site-library/Rsamtools/html/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Rsamtools/html/00Index.html
|
text/html | root:root | 0o644 | 31.6 KB |
/usr/lib/R/site-library/Rsamtools/html/R.css
|
text/plain | root:root | 0o644 | 1.2 KB |
/usr/lib/R/site-library/Rsamtools/include/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Rsamtools/include/samtools/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Rsamtools/include/samtools/bam.h
|
text/x-c | root:root | 0o644 | 25.2 KB |
/usr/lib/R/site-library/Rsamtools/include/samtools/bam_endian.h
|
text/x-c | root:root | 0o644 | 1.0 KB |
/usr/lib/R/site-library/Rsamtools/include/samtools/bcftools/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Rsamtools/include/samtools/bcftools/bcf.h
|
text/x-c | root:root | 0o644 | 7.1 KB |
/usr/lib/R/site-library/Rsamtools/include/samtools/bcftools/prob1.h
|
text/x-c | root:root | 0o644 | 1.4 KB |
/usr/lib/R/site-library/Rsamtools/include/samtools/bgzf.h
|
text/x-c | root:root | 0o644 | 6.2 KB |
/usr/lib/R/site-library/Rsamtools/include/samtools/faidx.h
|
text/x-c | root:root | 0o644 | 3.8 KB |
/usr/lib/R/site-library/Rsamtools/include/samtools/kaln.h
|
text/x-c | root:root | 0o644 | 2.0 KB |
/usr/lib/R/site-library/Rsamtools/include/samtools/khash.h
|
text/x-c | root:root | 0o644 | 17.4 KB |
/usr/lib/R/site-library/Rsamtools/include/samtools/knetfile.h
|
text/x-c | root:root | 0o644 | 1.7 KB |
/usr/lib/R/site-library/Rsamtools/include/samtools/kprobaln.h
|
text/x-c | root:root | 0o644 | 1.5 KB |
/usr/lib/R/site-library/Rsamtools/include/samtools/kseq.h
|
text/x-c | root:root | 0o644 | 8.6 KB |
/usr/lib/R/site-library/Rsamtools/include/samtools/ksort.h
|
text/x-c | root:root | 0o644 | 10.1 KB |
/usr/lib/R/site-library/Rsamtools/include/samtools/kstring.h
|
text/x-c | root:root | 0o644 | 4.4 KB |
/usr/lib/R/site-library/Rsamtools/include/samtools/razf.h
|
text/x-c | root:root | 0o644 | 4.0 KB |
/usr/lib/R/site-library/Rsamtools/include/samtools/sam.h
|
text/x-c | root:root | 0o644 | 2.6 KB |
/usr/lib/R/site-library/Rsamtools/include/samtools/sam_header.h
|
text/x-c | root:root | 0o644 | 1.6 KB |
/usr/lib/R/site-library/Rsamtools/include/tabix/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Rsamtools/include/tabix/bgzf.h
|
text/x-c | root:root | 0o644 | 6.2 KB |
/usr/lib/R/site-library/Rsamtools/include/tabix/knetfile.h
|
text/x-c | root:root | 0o644 | 1.7 KB |
/usr/lib/R/site-library/Rsamtools/include/tabix/kstring.h
|
text/x-c | root:root | 0o644 | 4.4 KB |
/usr/lib/R/site-library/Rsamtools/include/tabix/tabix.h
|
text/x-c | root:root | 0o644 | 4.6 KB |
/usr/lib/R/site-library/Rsamtools/libs/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Rsamtools/libs/Rsamtools.so
|
application/x-sharedlib | root:root | 0o644 | 407.1 KB |
/usr/lib/R/site-library/Rsamtools/scripts/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Rsamtools/scripts/BamViews-1000g.R
|
text/plain | root:root | 0o644 | 2.9 KB |
/usr/lib/R/site-library/Rsamtools/scripts/features.R
|
text/plain | root:root | 0o644 | 998 bytes |
/usr/lib/R/site-library/Rsamtools/scripts/readAligned_prototype.R
|
text/x-asm | root:root | 0o644 | 3.3 KB |
/usr/lib/R/site-library/Rsamtools/scripts/remote_test.R
|
text/plain | root:root | 0o644 | 763 bytes |
/usr/lib/R/site-library/Rsamtools/scripts/update-samtools.sh
|
text/x-shellscript | root:root | 0o755 | 997 bytes |
/usr/lib/R/site-library/Rsamtools/unitTests/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Rsamtools/unitTests/cases/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Rsamtools/unitTests/cases/ex1.sam.gz
|
application/gzip | root:root | 0o644 | 111.9 KB |
/usr/lib/R/site-library/Rsamtools/unitTests/cases/ex1_noindex.bam
|
application/gzip | root:root | 0o644 | 123.6 KB |
/usr/lib/R/site-library/Rsamtools/unitTests/cases/ex1_shuf1000.bam
|
application/gzip | root:root | 0o644 | 41.0 KB |
/usr/lib/R/site-library/Rsamtools/unitTests/cases/ex1_shuf1000.bam.bai
|
application/octet-stream | root:root | 0o644 | 72 bytes |
/usr/lib/R/site-library/Rsamtools/unitTests/cases/ex1_unsort.bam
|
application/gzip | root:root | 0o644 | 151.8 KB |
/usr/lib/R/site-library/Rsamtools/unitTests/cases/ex1_zero_index.bam.bai
|
application/x-empty | root:root | 0o644 | 0 bytes |
/usr/lib/R/site-library/Rsamtools/unitTests/cases/no_SAMPLE_header.vcf
|
text/plain | root:root | 0o644 | 1020 bytes |
/usr/lib/R/site-library/Rsamtools/unitTests/cases/no_header_line.vcf
|
text/plain | root:root | 0o644 | 807 bytes |
/usr/lib/R/site-library/Rsamtools/unitTests/cases/pileup-no-stars.txt
|
text/plain | root:root | 0o644 | 1.6 KB |
/usr/lib/R/site-library/Rsamtools/unitTests/cases/plp_refskip.bam
|
application/gzip | root:root | 0o644 | 246 bytes |
/usr/lib/R/site-library/Rsamtools/unitTests/cases/plp_refskip.bam.bai
|
application/octet-stream | root:root | 0o644 | 96 bytes |
/usr/lib/R/site-library/Rsamtools/unitTests/test_BamFile.R
|
text/plain | root:root | 0o644 | 8.9 KB |
/usr/lib/R/site-library/Rsamtools/unitTests/test_BamSampler.R
|
text/plain | root:root | 0o644 | 1.0 KB |
/usr/lib/R/site-library/Rsamtools/unitTests/test_BamViews.R
|
text/plain | root:root | 0o644 | 5.6 KB |
/usr/lib/R/site-library/Rsamtools/unitTests/test_BcfFile.R
|
text/plain | root:root | 0o644 | 3.9 KB |
/usr/lib/R/site-library/Rsamtools/unitTests/test_FaFile.R
|
text/plain | root:root | 0o644 | 2.7 KB |
/usr/lib/R/site-library/Rsamtools/unitTests/test_TabixFile.R
|
text/plain | root:root | 0o644 | 3.0 KB |
/usr/lib/R/site-library/Rsamtools/unitTests/test_applyPileups.R
|
text/plain | root:root | 0o644 | 6.7 KB |
/usr/lib/R/site-library/Rsamtools/unitTests/test_asBam.R
|
text/plain | root:root | 0o644 | 549 bytes |
/usr/lib/R/site-library/Rsamtools/unitTests/test_bam.R
|
text/plain | root:root | 0o644 | 11.2 KB |
/usr/lib/R/site-library/Rsamtools/unitTests/test_bam_count.R
|
text/plain | root:root | 0o644 | 1.6 KB |
/usr/lib/R/site-library/Rsamtools/unitTests/test_bam_header.R
|
text/plain | root:root | 0o644 | 304 bytes |
/usr/lib/R/site-library/Rsamtools/unitTests/test_compression.R
|
text/plain | root:root | 0o644 | 1.3 KB |
/usr/lib/R/site-library/Rsamtools/unitTests/test_readAligned.R
|
text/plain | root:root | 0o644 | 3.8 KB |
/usr/lib/R/site-library/Rsamtools/unitTests/test_readPileup.R
|
text/plain | root:root | 0o644 | 1.1 KB |
/usr/lib/R/site-library/Rsamtools/unitTests/test_scanBamFlag.R
|
text/plain | root:root | 0o644 | 343 bytes |
/usr/lib/R/site-library/Rsamtools/unitTests/test_sortBam_test.R
|
text/plain | root:root | 0o644 | 710 bytes |
/usr/lib/R/site-library/Rsamtools/unitTests/test_utilities.R
|
text/plain | root:root | 0o644 | 392 bytes |
/usr/lib/R/site-library/Rsamtools/usretc/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Rsamtools/usretc/Rsamtools.mk
|
text/plain | root:root | 0o644 | 386 bytes |
/usr/lib/R/site-library/Rsamtools/usrlib/
|
root:root | 0o755 | ||
/usr/lib/R/site-library/Rsamtools/usrlib/libbam.a
|
application/x-archive | root:root | 0o644 | 271.2 KB |
/usr/lib/R/site-library/Rsamtools/usrlib/libbcf.a
|
application/x-archive | root:root | 0o644 | 115.4 KB |
/usr/lib/R/site-library/Rsamtools/usrlib/libtabix.a
|
application/x-archive | root:root | 0o644 | 89.3 KB |