/usr/share/doc/theseus/examples/getexamples is in theseus 3.0.0-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 | #!/bin/sh
# Get example input files for theseus
# Copyright (C) 2007 Morten Kjeldgaard <mok@bioxray.dk>
#
# This script is free software; you can redistribute it and/or
# modify it under the terms of the GNU General Public
# License as published by the Free Software Foundation; either
# version 2.1 of the License, or (at your option) any later
# version.
#
# This script is distributed in the hope that it will be useful,
# but WITHOUT ANY WARRANTY; without even the implied warranty of
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU
# General Public License for more details.
#
# You should have received a copy of the GNU General Public
# License along with this script; if not, write to the Free
# Software Foundation, Inc., 51 Franklin Street, Fifth Floor,
# Boston, MA 02110-1301 USA
set -e
pdbs="1s40"
astrals="d1ciha_ d1crja_ d1csua_ d1csxa_ d1kyow_ d1lfma_ d1m60a_ d1u74d_ d1yeba_ d2pcbb_"
#astrals="d1cih__ d1cih__2 d1crj__ d1csu__ d1csx__ d1kyow_ d1lfma_ d1m60a_ d1u74d_ d1yeb__ d2pcbb_"
# function to fetch entries from the pdb
pdb_fetch () {
for f in $* ; do
wget -q -O $f.pdb.gz ftp://ftp.wwpdb.org:/pub/pdb/data/structures/all/pdb/pdb${f}.ent.gz
gzip -d ${f}.pdb.gz
echo fetched $f.pdb
done
}
# function to fetch entries from astral
astral_fetch() {
for f in $* ; do
wget -q -O ${f}.pdb http://astral.berkeley.edu/pdbstyle.cgi?id=${f}&output=text
echo fetched $f.pdb
done
}
savedir=$PWD
cd /tmp
echo Downloading to directory /tmp
pdb_fetch $pdbs
astral_fetch $astrals
cd $savedir
|