/usr/share/doc/vcftools/examples/merge-test.vcf.out is in vcftools 0.1.12+dfsg-1.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 | ##fileformat=VCFv4.2
##FILTER=<ID=q10,Description="Quality below 10">
##FORMAT=<ID=GL,Number=G,Type=Float,Description="Genotype Likelihood">
##FILTER=<ID=q20,Description="Mapping quality below 20">
##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
##FORMAT=<ID=GT,Number=1,Type=String,Description="Genotype">
##FORMAT=<ID=GQ,Number=1,Type=Integer,Description="Genotype Quality">
##FORMAT=<ID=DP,Number=1,Type=Integer,Description="Read Depth">
##INFO=<ID=SF,Number=.,Type=String,Description="Source File (index to sourceFiles, f when filtered)">
##INFO=<ID=AC,Number=.,Type=Integer,Description="Allele count in genotypes">
##INFO=<ID=AN,Number=1,Type=Integer,Description="Total number of alleles in called genotypes">
#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT A B C
1 3062915 . GTTT G,GT 856.67 q20;q10 AC=2,1;AN=6;DP4=3,6,9,12;DP=59;SF=0f,1f,2 GT:GL:DP:GQ 0/1:-20,-5,-20,.,.,.:35:409 0/2:-10,.,.,0,.,-10:14:376 0/1:.:10:149
1 3106154 . CAAAA CA,C 912.67 PASS AC=3,1;AN=6;DP=56;SF=0,1,2 GT:GL:DP:GQ 0/1:.:32:245 0/2:-10,.,.,0,.,-10:15:277 1/1:.:9:25
1 3157410 . GA G 363.00 q10 AC=4;AN=6;DP=42;SF=0f,1,2 GT:DP:GQ 1/1:21:21 0/1:11:49 0/1:10:52
1 3162006 . GAA G 745.67 PASS AC=3;AN=6;DP=58;SF=0,1,2 GT:DP:GQ 0/1:22:212 0/1:19:589 0/1:17:163
1 3177144 . GT G 466.00 PASS AC=3;AN=6;DP=68;SF=0,1,2 GT:DP:GQ 0/1:30:150 0/1:24:236 0/1:14:151
1 3184885 . TAAAA TA,T 422.00 PASS AC=2,1;AN=4;DP=26;SF=0,1 GT:DP:GQ 1/2:10:12 0/1:16:435 .
1 3199812 . G GT . . AC=2;AN=2;SF=2 GT . . 1/1
2 3188209 . GA G 162.00 . AC=1;AN=2;DP=15;SF=1 GT:DP:GQ . 0/1:15:162 .
2 3199812 . G GTT,GT 481.00 PASS AC=1,1;AN=2;DP=26;SF=0 GT:DP:GQ 1/2:26:322 . .
2 3212016 . CTT C 613.00 . AC=1;AN=2;DP=11;SF=2 GT:DP:GQ . . 0/1:11:41
3 3199812 . G GTT,GT 353.00 PASS AC=1,1;AN=2;DP=19;SF=1 GT:DP:GQ . 1/2:19:188 .
3 3199815 . G T,A 353.00 PASS AC=1,1;AN=4;DP=38;SF=1,2 GT:DP:GQ . 0/2:19:188 0/1:19:188
3 3212016 . CTT C,CT 565.00 PASS AC=1,1;AN=2;DP=26;SF=0 GT:DP:GQ 1/2:26:91 . .
3 3242491 . TT T . . AC=2;AN=2;SF=2 GT . . 1/1
4 3212016 . CTT C 677.00 q20 AC=1;AN=2;DP=15;SF=1f GT:DP:GQ . 0/1:15:158 .
4 3258448 . TACACACAC T 325.00 PASS AC=1;AN=2;DP=31;SF=0 GT:DP:GQ 0/1:31:325 . .
4 3291771 . T TAA,TAAA 336.00 . AC=1,1;AN=2;DP=12;SF=2 GT:DP:GQ . . 1/2:12:2
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