/usr/share/gmt/conf/gmt.conf is in gmt-common 5.3.1+dfsg-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
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# GMT 5.3.1 Defaults file (System-wide version)
# vim:sw=8:ts=8:sts=8
# $Revision: 15178 $
# $LastChangedDate: 2015-11-06 00:45:03 -1000 (Fri, 06 Nov 2015) $
#
# COLOR Parameters
#
COLOR_BACKGROUND = black
COLOR_FOREGROUND = white
COLOR_NAN = 127.5
COLOR_MODEL = none
COLOR_HSV_MIN_S = 1
COLOR_HSV_MAX_S = 0.1
COLOR_HSV_MIN_V = 0.3
COLOR_HSV_MAX_V = 1
#
# DIR Parameters
#
DIR_DATA =
DIR_DCW = /usr/share/gmt-dcw
DIR_GSHHG = /usr/share/gmt-gshhg
#
# FONT Parameters
#
FONT_ANNOT_PRIMARY = 12p,Helvetica,black
FONT_ANNOT_SECONDARY = 14p,Helvetica,black
FONT_LABEL = 16p,Helvetica,black
FONT_LOGO = 8p,Helvetica,black
FONT_TITLE = 24p,Helvetica,black
#
# FORMAT Parameters
#
FORMAT_CLOCK_IN = hh:mm:ss
FORMAT_CLOCK_OUT = hh:mm:ss
FORMAT_CLOCK_MAP = hh:mm:ss
FORMAT_DATE_IN = yyyy-mm-dd
FORMAT_DATE_OUT = yyyy-mm-dd
FORMAT_DATE_MAP = yyyy-mm-dd
FORMAT_GEO_OUT = D
FORMAT_GEO_MAP = ddd:mm:ss
FORMAT_FLOAT_OUT = %.12g
FORMAT_FLOAT_MAP = %.12g
FORMAT_TIME_PRIMARY_MAP = full
FORMAT_TIME_SECONDARY_MAP = full
FORMAT_TIME_STAMP = %Y %b %d %H:%M:%S
#
# GMT Miscellaneous Parameters
#
GMT_COMPATIBILITY = 4
GMT_CUSTOM_LIBS =
GMT_EXPORT_TYPE = double
GMT_EXTRAPOLATE_VAL = NaN
GMT_FFT = auto
GMT_HISTORY = true
GMT_INTERPOLANT = akima
GMT_LANGUAGE = us
GMT_TRIANGULATE = Watson
GMT_VERBOSE = compat
#
# I/O Parameters
#
IO_COL_SEPARATOR = tab
IO_GRIDFILE_FORMAT = nf
IO_GRIDFILE_SHORTHAND = false
IO_HEADER = false
IO_N_HEADER_RECS = 0
IO_NAN_RECORDS = pass
IO_NC4_CHUNK_SIZE = auto
IO_NC4_DEFLATION_LEVEL = 3
IO_LONLAT_TOGGLE = false
IO_SEGMENT_BINARY = 2
IO_SEGMENT_MARKER = >
#
# MAP Parameters
#
MAP_ANNOT_MIN_ANGLE = 20
MAP_ANNOT_MIN_SPACING = 0p
MAP_ANNOT_OBLIQUE = 1
MAP_ANNOT_OFFSET_PRIMARY = 5p
MAP_ANNOT_OFFSET_SECONDARY = 5p
MAP_ANNOT_ORTHO = we
MAP_DEFAULT_PEN = default,black
MAP_DEGREE_SYMBOL = ring
MAP_FRAME_AXES = WESNZ
MAP_FRAME_PEN = thicker,black
MAP_FRAME_TYPE = fancy
MAP_FRAME_WIDTH = 5p
MAP_GRID_CROSS_SIZE_PRIMARY = 0p
MAP_GRID_CROSS_SIZE_SECONDARY = 0p
MAP_GRID_PEN_PRIMARY = default,black
MAP_GRID_PEN_SECONDARY = thinner,black
MAP_LABEL_OFFSET = 8p
MAP_LINE_STEP = 0.75p
MAP_LOGO = false
MAP_LOGO_POS = BL/-54p/-54p
MAP_ORIGIN_X = 1i
MAP_ORIGIN_Y = 1i
MAP_POLAR_CAP = 85/90
MAP_SCALE_HEIGHT = 5p
MAP_TICK_LENGTH_PRIMARY = 5p/2.5p
MAP_TICK_LENGTH_SECONDARY = 15p/3.75p
MAP_TICK_PEN_PRIMARY = thinner,black
MAP_TICK_PEN_SECONDARY = thinner,black
MAP_TITLE_OFFSET = 14p
MAP_VECTOR_SHAPE = 0
#
# Projection Parameters
#
PROJ_AUX_LATITUDE = authalic
PROJ_ELLIPSOID = WGS-84
PROJ_GEODESIC = Vincenty
PROJ_LENGTH_UNIT = cm
PROJ_MEAN_RADIUS = authalic
PROJ_SCALE_FACTOR = default
#
# PostScript Parameters
#
PS_CHAR_ENCODING = ISOLatin1+
PS_COLOR_MODEL = rgb
PS_COMMENTS = false
PS_IMAGE_COMPRESS = deflate,5
PS_LINE_CAP = butt
PS_LINE_JOIN = miter
PS_MITER_LIMIT = 35
PS_MEDIA = a4
PS_PAGE_COLOR = white
PS_PAGE_ORIENTATION = landscape
PS_SCALE_X = 1
PS_SCALE_Y = 1
PS_TRANSPARENCY = Normal
#
# Calendar/Time Parameters
#
TIME_EPOCH = 1970-01-01T00:00:00
TIME_IS_INTERVAL = off
TIME_INTERVAL_FRACTION = 0.5
TIME_REPORT = none
TIME_UNIT = s
TIME_WEEK_START = Monday
TIME_Y2K_OFFSET_YEAR = 1950
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