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<div class="title">BamAlignment.h File Reference</div> </div>
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<div class="textblock"><code>#include "<a class="el" href="api__global_8h_source.html">api/api_global.h</a>"</code><br />
<code>#include "<a class="el" href="_bam_aux_8h_source.html">api/BamAux.h</a>"</code><br />
<code>#include "<a class="el" href="_bam_constants_8h_source.html">api/BamConstants.h</a>"</code><br />
<code>#include <cstdlib></code><br />
<code>#include <cstring></code><br />
<code>#include <string></code><br />
<code>#include <vector></code><br />
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<p><a href="_bam_alignment_8h_source.html">Go to the source code of this file.</a></p>
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<tr class="memitem:"><td class="memItemLeft" align="right" valign="top">class  </td><td class="memItemRight" valign="bottom"><a class="el" href="class_bam_tools_1_1_bam_alignment.html">BamTools::BamAlignment</a></td></tr>
<tr class="memdesc:"><td class="mdescLeft"> </td><td class="mdescRight">The main BAM alignment data structure. <a href="class_bam_tools_1_1_bam_alignment.html#details">More...</a><br /></td></tr>
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<tr class="memitem:a5ec8c1bc89a0c5979696a4a124fcbaeb"><td class="memItemLeft" align="right" valign="top">typedef std::vector< BamAlignment > </td><td class="memItemRight" valign="bottom"><a class="el" href="namespace_bam_tools.html#a5ec8c1bc89a0c5979696a4a124fcbaeb">BamTools::BamAlignmentVector</a></td></tr>
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Functions</h2></td></tr>
<tr class="memitem:ac9a7f11b4033e3f29183dce30e29b7da"><td class="memTemplParams" colspan="2">template<> </td></tr>
<tr class="memitem:ac9a7f11b4033e3f29183dce30e29b7da"><td class="memTemplItemLeft" align="right" valign="top">bool </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="namespace_bam_tools.html#ac9a7f11b4033e3f29183dce30e29b7da">BamTools::BamAlignment::AddTag< std::string ></a> (const std::string &tag, const std::string &type, const std::string &value)</td></tr>
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<tr class="memitem:a8b6c0f9db6f33bd8213304ce47a7e857"><td class="memTemplParams" colspan="2">template<> </td></tr>
<tr class="memitem:a8b6c0f9db6f33bd8213304ce47a7e857"><td class="memTemplItemLeft" align="right" valign="top">bool </td><td class="memTemplItemRight" valign="bottom"><a class="el" href="namespace_bam_tools.html#a8b6c0f9db6f33bd8213304ce47a7e857">BamTools::BamAlignment::GetTag< std::string ></a> (const std::string &tag, std::string &destination) const</td></tr>
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