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<a href="_bam_constants_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno"> 1</span> <span class="comment">// ***************************************************************************</span></div><div class="line"><a name="l00002"></a><span class="lineno"> 2</span> <span class="comment">// BamConstants.h (c) 2011 Derek Barnett</span></div><div class="line"><a name="l00003"></a><span class="lineno"> 3</span> <span class="comment">// Marth Lab, Department of Biology, Boston College</span></div><div class="line"><a name="l00004"></a><span class="lineno"> 4</span> <span class="comment">// ---------------------------------------------------------------------------</span></div><div class="line"><a name="l00005"></a><span class="lineno"> 5</span> <span class="comment">// Last modified: 16 October 2011 (DB)</span></div><div class="line"><a name="l00006"></a><span class="lineno"> 6</span> <span class="comment">// ---------------------------------------------------------------------------</span></div><div class="line"><a name="l00007"></a><span class="lineno"> 7</span> <span class="comment">// Provides basic constants for handling BAM files.</span></div><div class="line"><a name="l00008"></a><span class="lineno"> 8</span> <span class="comment">// ***************************************************************************</span></div><div class="line"><a name="l00009"></a><span class="lineno"> 9</span> </div><div class="line"><a name="l00010"></a><span class="lineno"> 10</span> <span class="preprocessor">#ifndef BAM_CONSTANTS_H</span></div><div class="line"><a name="l00011"></a><span class="lineno"> 11</span> <span class="preprocessor">#define BAM_CONSTANTS_H</span></div><div class="line"><a name="l00012"></a><span class="lineno"> 12</span> </div><div class="line"><a name="l00013"></a><span class="lineno"> 13</span> <span class="preprocessor">#include "<a class="code" href="api__global_8h.html">api/api_global.h</a>"</span></div><div class="line"><a name="l00014"></a><span class="lineno"> 14</span> <span class="preprocessor">#include <cassert></span></div><div class="line"><a name="l00015"></a><span class="lineno"> 15</span> <span class="preprocessor">#include <string></span></div><div class="line"><a name="l00016"></a><span class="lineno"> 16</span> </div><div class="line"><a name="l00021"></a><span class="lineno"> 21</span> <span class="keyword">namespace </span><a class="code" href="namespace_bam_tools.html">BamTools</a> {</div><div class="line"><a name="l00022"></a><span class="lineno"> 22</span> <span class="keyword">namespace </span>Constants {</div><div class="line"><a name="l00023"></a><span class="lineno"> 23</span> </div><div class="line"><a name="l00024"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#aab7577dd1e0aa486b2c41b571246734a"> 24</a></span> <span class="keyword">const</span> uint8_t <a class="code" href="namespace_bam_tools_1_1_constants.html#aab7577dd1e0aa486b2c41b571246734a">BAM_SIZEOF_INT</a> = 4;</div><div class="line"><a name="l00025"></a><span class="lineno"> 25</span> </div><div class="line"><a name="l00026"></a><span class="lineno"> 26</span> <span class="comment">// header magic number</span></div><div class="line"><a name="l00027"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a4d420915043283204725c9014e02ba73"> 27</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span>* <span class="keyword">const</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a4d420915043283204725c9014e02ba73">BAM_HEADER_MAGIC</a> = <span class="stringliteral">"BAM\1"</span>;</div><div class="line"><a name="l00028"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#aa07a8f5b5806d868253dda7bf08f3516"> 28</a></span> <span class="keyword">const</span> uint8_t <a class="code" href="namespace_bam_tools_1_1_constants.html#aa07a8f5b5806d868253dda7bf08f3516">BAM_HEADER_MAGIC_LENGTH</a> = 4;</div><div class="line"><a name="l00029"></a><span class="lineno"> 29</span> </div><div class="line"><a name="l00030"></a><span class="lineno"> 30</span> <span class="comment">// BAM alignment core size</span></div><div class="line"><a name="l00031"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a683a67e3dcf74ab031fc2da70befe686"> 31</a></span> <span class="keyword">const</span> uint8_t <a class="code" href="namespace_bam_tools_1_1_constants.html#a683a67e3dcf74ab031fc2da70befe686">BAM_CORE_SIZE</a> = 32;</div><div class="line"><a name="l00032"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a4f333c53a00ae1b2f2cf24710f380de9"> 32</a></span> <span class="keyword">const</span> uint8_t <a class="code" href="namespace_bam_tools_1_1_constants.html#a4f333c53a00ae1b2f2cf24710f380de9">BAM_CORE_BUFFER_SIZE</a> = 8;</div><div class="line"><a name="l00033"></a><span class="lineno"> 33</span> </div><div class="line"><a name="l00034"></a><span class="lineno"> 34</span> <span class="comment">// BAM alignment flags</span></div><div class="line"><a name="l00035"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a3f48cc7d5bc98ba489b5f93655006c83"> 35</a></span> <span class="keyword">const</span> <span class="keywordtype">int</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a3f48cc7d5bc98ba489b5f93655006c83">BAM_ALIGNMENT_PAIRED</a> = 0x0001;</div><div class="line"><a name="l00036"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#acf91d3f746dd27a9582730dde5065d1f"> 36</a></span> <span class="keyword">const</span> <span class="keywordtype">int</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#acf91d3f746dd27a9582730dde5065d1f">BAM_ALIGNMENT_PROPER_PAIR</a> = 0x0002;</div><div class="line"><a name="l00037"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a0af300f2f62e62839a888338e9009ada"> 37</a></span> <span class="keyword">const</span> <span class="keywordtype">int</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a0af300f2f62e62839a888338e9009ada">BAM_ALIGNMENT_UNMAPPED</a> = 0x0004;</div><div class="line"><a name="l00038"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#aeb3c4065636d76514199ee8f8bb32ba0"> 38</a></span> <span class="keyword">const</span> <span class="keywordtype">int</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#aeb3c4065636d76514199ee8f8bb32ba0">BAM_ALIGNMENT_MATE_UNMAPPED</a> = 0x0008;</div><div class="line"><a name="l00039"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a942c3eb75b622e7da410107c22ee01dd"> 39</a></span> <span class="keyword">const</span> <span class="keywordtype">int</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a942c3eb75b622e7da410107c22ee01dd">BAM_ALIGNMENT_REVERSE_STRAND</a> = 0x0010;</div><div class="line"><a name="l00040"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#ab80397a7feb8e03487a7bde45408eea0"> 40</a></span> <span class="keyword">const</span> <span class="keywordtype">int</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#ab80397a7feb8e03487a7bde45408eea0">BAM_ALIGNMENT_MATE_REVERSE_STRAND</a> = 0x0020;</div><div class="line"><a name="l00041"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a8f879d2da352f2ada6f1cf232203fa00"> 41</a></span> <span class="keyword">const</span> <span class="keywordtype">int</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a8f879d2da352f2ada6f1cf232203fa00">BAM_ALIGNMENT_READ_1</a> = 0x0040;</div><div class="line"><a name="l00042"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#aa46eb732dfd824a85df2131cd0af0c51"> 42</a></span> <span class="keyword">const</span> <span class="keywordtype">int</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#aa46eb732dfd824a85df2131cd0af0c51">BAM_ALIGNMENT_READ_2</a> = 0x0080;</div><div class="line"><a name="l00043"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a55cea93676b7c14b9f56c069feec81ae"> 43</a></span> <span class="keyword">const</span> <span class="keywordtype">int</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a55cea93676b7c14b9f56c069feec81ae">BAM_ALIGNMENT_SECONDARY</a> = 0x0100;</div><div class="line"><a name="l00044"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a6fe3a16d10c529664c82a3c561dd0260"> 44</a></span> <span class="keyword">const</span> <span class="keywordtype">int</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a6fe3a16d10c529664c82a3c561dd0260">BAM_ALIGNMENT_QC_FAILED</a> = 0x0200;</div><div class="line"><a name="l00045"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a37050e3b292a5b87c30bd374c429cfed"> 45</a></span> <span class="keyword">const</span> <span class="keywordtype">int</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a37050e3b292a5b87c30bd374c429cfed">BAM_ALIGNMENT_DUPLICATE</a> = 0x0400;</div><div class="line"><a name="l00046"></a><span class="lineno"> 46</span> </div><div class="line"><a name="l00047"></a><span class="lineno"> 47</span> <span class="comment">// CIGAR constants</span></div><div class="line"><a name="l00048"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a5df64e7330adc1a424c63a9df346b714"> 48</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span>* <span class="keyword">const</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a5df64e7330adc1a424c63a9df346b714">BAM_CIGAR_LOOKUP</a> = <span class="stringliteral">"MIDNSHP=X"</span>;</div><div class="line"><a name="l00049"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#aa82388acae7dc4aa8419e38ea34907d0"> 49</a></span> <span class="keyword">const</span> uint8_t <a class="code" href="namespace_bam_tools_1_1_constants.html#aa82388acae7dc4aa8419e38ea34907d0">BAM_CIGAR_MATCH</a> = 0;</div><div class="line"><a name="l00050"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a58358f7f33aff9bb47d3cebd6495cf46"> 50</a></span> <span class="keyword">const</span> uint8_t <a class="code" href="namespace_bam_tools_1_1_constants.html#a58358f7f33aff9bb47d3cebd6495cf46">BAM_CIGAR_INS</a> = 1;</div><div class="line"><a name="l00051"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a7416fc35d41b4eea72a07f8b4bf202ba"> 51</a></span> <span class="keyword">const</span> uint8_t <a class="code" href="namespace_bam_tools_1_1_constants.html#a7416fc35d41b4eea72a07f8b4bf202ba">BAM_CIGAR_DEL</a> = 2;</div><div class="line"><a name="l00052"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a2d143a0515309004325acf6de92d677d"> 52</a></span> <span class="keyword">const</span> uint8_t <a class="code" href="namespace_bam_tools_1_1_constants.html#a2d143a0515309004325acf6de92d677d">BAM_CIGAR_REFSKIP</a> = 3;</div><div class="line"><a name="l00053"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#adf8b2798aa1bdbcf114f0322c8e3d3f8"> 53</a></span> <span class="keyword">const</span> uint8_t <a class="code" href="namespace_bam_tools_1_1_constants.html#adf8b2798aa1bdbcf114f0322c8e3d3f8">BAM_CIGAR_SOFTCLIP</a> = 4;</div><div class="line"><a name="l00054"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#afca0644edb22a67ca38e2547df9d07de"> 54</a></span> <span class="keyword">const</span> uint8_t <a class="code" href="namespace_bam_tools_1_1_constants.html#afca0644edb22a67ca38e2547df9d07de">BAM_CIGAR_HARDCLIP</a> = 5;</div><div class="line"><a name="l00055"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a2e275e65b17bd297c12e3fee1345308d"> 55</a></span> <span class="keyword">const</span> uint8_t <a class="code" href="namespace_bam_tools_1_1_constants.html#a2e275e65b17bd297c12e3fee1345308d">BAM_CIGAR_PAD</a> = 6;</div><div class="line"><a name="l00056"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a2d48281859778c215ac640b775958771"> 56</a></span> <span class="keyword">const</span> uint8_t <a class="code" href="namespace_bam_tools_1_1_constants.html#a2d48281859778c215ac640b775958771">BAM_CIGAR_SEQMATCH</a> = 7;</div><div class="line"><a name="l00057"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a15ed7a86971ec7829de7f711429546b7"> 57</a></span> <span class="keyword">const</span> uint8_t <a class="code" href="namespace_bam_tools_1_1_constants.html#a15ed7a86971ec7829de7f711429546b7">BAM_CIGAR_MISMATCH</a> = 8;</div><div class="line"><a name="l00058"></a><span class="lineno"> 58</span> </div><div class="line"><a name="l00059"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a49b43dd10eb1fb2797f6dc9563c72684"> 59</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a49b43dd10eb1fb2797f6dc9563c72684">BAM_CIGAR_MATCH_CHAR</a> = <span class="charliteral">'M'</span>;</div><div class="line"><a name="l00060"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a34b5b378b1c97f6c65e0b924e9e6eca3"> 60</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a34b5b378b1c97f6c65e0b924e9e6eca3">BAM_CIGAR_INS_CHAR</a> = <span class="charliteral">'I'</span>;</div><div class="line"><a name="l00061"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#ab67f12cc6a7c8d5ad0d276d7ab73ed32"> 61</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#ab67f12cc6a7c8d5ad0d276d7ab73ed32">BAM_CIGAR_DEL_CHAR</a> = <span class="charliteral">'D'</span>;</div><div class="line"><a name="l00062"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#ae1abd2b2a5af02ff5e2947006a314baa"> 62</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#ae1abd2b2a5af02ff5e2947006a314baa">BAM_CIGAR_REFSKIP_CHAR</a> = <span class="charliteral">'N'</span>;</div><div class="line"><a name="l00063"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a4c5fb54257c31e13169dbdfdec7ec9be"> 63</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a4c5fb54257c31e13169dbdfdec7ec9be">BAM_CIGAR_SOFTCLIP_CHAR</a> = <span class="charliteral">'S'</span>;</div><div class="line"><a name="l00064"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#aeb8cfe26e4d02dd3147ef1535f22ab4b"> 64</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#aeb8cfe26e4d02dd3147ef1535f22ab4b">BAM_CIGAR_HARDCLIP_CHAR</a> = <span class="charliteral">'H'</span>;</div><div class="line"><a name="l00065"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a87cb872b98fac4e5bfa832c3b8b6d652"> 65</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a87cb872b98fac4e5bfa832c3b8b6d652">BAM_CIGAR_PAD_CHAR</a> = <span class="charliteral">'P'</span>;</div><div class="line"><a name="l00066"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a3ba73be6eb4d6f4b0b15d4496c069bdb"> 66</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a3ba73be6eb4d6f4b0b15d4496c069bdb">BAM_CIGAR_SEQMATCH_CHAR</a> = <span class="charliteral">'='</span>;</div><div class="line"><a name="l00067"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a7fa8715e1c64c9afaaa76c6ad7275287"> 67</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a7fa8715e1c64c9afaaa76c6ad7275287">BAM_CIGAR_MISMATCH_CHAR</a> = <span class="charliteral">'X'</span>;</div><div class="line"><a name="l00068"></a><span class="lineno"> 68</span> </div><div class="line"><a name="l00069"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a2a8e9fd624e8d5e320c755f06452bfdc"> 69</a></span> <span class="keyword">const</span> <span class="keywordtype">int</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a2a8e9fd624e8d5e320c755f06452bfdc">BAM_CIGAR_SHIFT</a> = 4;</div><div class="line"><a name="l00070"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a8e2e4a56c82f139cd47a520ed588a67c"> 70</a></span> <span class="keyword">const</span> <span class="keywordtype">int</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a8e2e4a56c82f139cd47a520ed588a67c">BAM_CIGAR_MASK</a> = ((1 << <a class="code" href="namespace_bam_tools_1_1_constants.html#a2a8e9fd624e8d5e320c755f06452bfdc">BAM_CIGAR_SHIFT</a>) - 1);</div><div class="line"><a name="l00071"></a><span class="lineno"> 71</span> </div><div class="line"><a name="l00072"></a><span class="lineno"> 72</span> <span class="comment">// BAM tag types & sizes</span></div><div class="line"><a name="l00073"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a25602acbbce34e865d67d75b9966a4fc"> 73</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a25602acbbce34e865d67d75b9966a4fc">BAM_TAG_TYPE_ASCII</a> = <span class="charliteral">'A'</span>;</div><div class="line"><a name="l00074"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a8cb4f3703011f90521564830a7f7df01"> 74</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a8cb4f3703011f90521564830a7f7df01">BAM_TAG_TYPE_INT8</a> = <span class="charliteral">'c'</span>;</div><div class="line"><a name="l00075"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a0c4f77ed450936979e858e0703324dab"> 75</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a0c4f77ed450936979e858e0703324dab">BAM_TAG_TYPE_UINT8</a> = <span class="charliteral">'C'</span>;</div><div class="line"><a name="l00076"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#aa51e6bf07e0ec1f00072477492d31a57"> 76</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#aa51e6bf07e0ec1f00072477492d31a57">BAM_TAG_TYPE_INT16</a> = <span class="charliteral">'s'</span>;</div><div class="line"><a name="l00077"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a9b7df792a6c644788360152e2cf56a3c"> 77</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a9b7df792a6c644788360152e2cf56a3c">BAM_TAG_TYPE_UINT16</a> = <span class="charliteral">'S'</span>;</div><div class="line"><a name="l00078"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a20a298552510340fdc2b76c496186884"> 78</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a20a298552510340fdc2b76c496186884">BAM_TAG_TYPE_INT32</a> = <span class="charliteral">'i'</span>;</div><div class="line"><a name="l00079"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a657c724f6561af0520aa6c2f4c23f740"> 79</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a657c724f6561af0520aa6c2f4c23f740">BAM_TAG_TYPE_UINT32</a> = <span class="charliteral">'I'</span>;</div><div class="line"><a name="l00080"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a5f4b4689a7898fde204f9f3275a6bcdf"> 80</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a5f4b4689a7898fde204f9f3275a6bcdf">BAM_TAG_TYPE_FLOAT</a> = <span class="charliteral">'f'</span>;</div><div class="line"><a name="l00081"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a7f2d8fb36a83c9f0b14ec88100f69d62"> 81</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a7f2d8fb36a83c9f0b14ec88100f69d62">BAM_TAG_TYPE_STRING</a> = <span class="charliteral">'Z'</span>;</div><div class="line"><a name="l00082"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a1f432cf41f5c315f8da46f302ab9cdc4"> 82</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a1f432cf41f5c315f8da46f302ab9cdc4">BAM_TAG_TYPE_HEX</a> = <span class="charliteral">'H'</span>;</div><div class="line"><a name="l00083"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a53c2f04fc2e633f61e8f39264b6ad0b0"> 83</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a53c2f04fc2e633f61e8f39264b6ad0b0">BAM_TAG_TYPE_ARRAY</a> = <span class="charliteral">'B'</span>;</div><div class="line"><a name="l00084"></a><span class="lineno"> 84</span> </div><div class="line"><a name="l00085"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a4d1b3e2b26a9d163336a4a83c62b86b7"> 85</a></span> <span class="keyword">const</span> uint8_t <a class="code" href="namespace_bam_tools_1_1_constants.html#a4d1b3e2b26a9d163336a4a83c62b86b7">BAM_TAG_TAGSIZE</a> = 2;</div><div class="line"><a name="l00086"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#ad0df071315bb6be4d088850ac4951a26"> 86</a></span> <span class="keyword">const</span> uint8_t <a class="code" href="namespace_bam_tools_1_1_constants.html#ad0df071315bb6be4d088850ac4951a26">BAM_TAG_TYPESIZE</a> = 1;</div><div class="line"><a name="l00087"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#aff396fa749e1439449433191eae166c7"> 87</a></span> <span class="keyword">const</span> uint8_t <a class="code" href="namespace_bam_tools_1_1_constants.html#aff396fa749e1439449433191eae166c7">BAM_TAG_ARRAYBASE_SIZE</a> = 8;</div><div class="line"><a name="l00088"></a><span class="lineno"> 88</span> </div><div class="line"><a name="l00089"></a><span class="lineno"> 89</span> <span class="comment">// DNA bases</span></div><div class="line"><a name="l00090"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a85a206d07dc03d3c54987e38ea9ebddb"> 90</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span>* <span class="keyword">const</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a85a206d07dc03d3c54987e38ea9ebddb">BAM_DNA_LOOKUP</a> = <span class="stringliteral">"=ACMGRSVTWYHKDBN"</span>;</div><div class="line"><a name="l00091"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a6b380ae8d3813f34d784ffe744009443"> 91</a></span> <span class="keyword">const</span> uint8_t <a class="code" href="namespace_bam_tools_1_1_constants.html#a6b380ae8d3813f34d784ffe744009443">BAM_BASECODE_EQUAL</a> = 0;</div><div class="line"><a name="l00092"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#ac91f463b6a3b6df41b537cd4683b6bd4"> 92</a></span> <span class="keyword">const</span> uint8_t <a class="code" href="namespace_bam_tools_1_1_constants.html#ac91f463b6a3b6df41b537cd4683b6bd4">BAM_BASECODE_A</a> = 1;</div><div class="line"><a name="l00093"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a4334def5a15ac8f47d44d5e1a736a2bd"> 93</a></span> <span class="keyword">const</span> uint8_t <a class="code" href="namespace_bam_tools_1_1_constants.html#a4334def5a15ac8f47d44d5e1a736a2bd">BAM_BASECODE_C</a> = 2;</div><div class="line"><a name="l00094"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a29e1115d2b79fc100ecab38adb40db67"> 94</a></span> <span class="keyword">const</span> uint8_t <a class="code" href="namespace_bam_tools_1_1_constants.html#a29e1115d2b79fc100ecab38adb40db67">BAM_BASECODE_M</a> = 3;</div><div class="line"><a name="l00095"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#ae3415505557271c7b3482c37b6fe7095"> 95</a></span> <span class="keyword">const</span> uint8_t <a class="code" href="namespace_bam_tools_1_1_constants.html#ae3415505557271c7b3482c37b6fe7095">BAM_BASECODE_G</a> = 4;</div><div class="line"><a name="l00096"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#af58d5abf790943c6730e1709456d342a"> 96</a></span> <span class="keyword">const</span> uint8_t <a class="code" href="namespace_bam_tools_1_1_constants.html#af58d5abf790943c6730e1709456d342a">BAM_BASECODE_R</a> = 5;</div><div class="line"><a name="l00097"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a10fad45bead6c1c0e05b7c7ccd67b8e3"> 97</a></span> <span class="keyword">const</span> uint8_t <a class="code" href="namespace_bam_tools_1_1_constants.html#a10fad45bead6c1c0e05b7c7ccd67b8e3">BAM_BASECODE_S</a> = 6;</div><div class="line"><a name="l00098"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a61c28e76e68e67316e96e5f11c23b2c1"> 98</a></span> <span class="keyword">const</span> uint8_t <a class="code" href="namespace_bam_tools_1_1_constants.html#a61c28e76e68e67316e96e5f11c23b2c1">BAM_BASECODE_V</a> = 7;</div><div class="line"><a name="l00099"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a4c4976bb95ab86fda4ebdc1af64488df"> 99</a></span> <span class="keyword">const</span> uint8_t <a class="code" href="namespace_bam_tools_1_1_constants.html#a4c4976bb95ab86fda4ebdc1af64488df">BAM_BASECODE_T</a> = 8;</div><div class="line"><a name="l00100"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a507d614e3a07eda97c51c9d5a4ed5d10"> 100</a></span> <span class="keyword">const</span> uint8_t <a class="code" href="namespace_bam_tools_1_1_constants.html#a507d614e3a07eda97c51c9d5a4ed5d10">BAM_BASECODE_W</a> = 9;</div><div class="line"><a name="l00101"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#aa57cf890a2ac91ba279541f0e924ba0b"> 101</a></span> <span class="keyword">const</span> uint8_t <a class="code" href="namespace_bam_tools_1_1_constants.html#aa57cf890a2ac91ba279541f0e924ba0b">BAM_BASECODE_Y</a> = 10;</div><div class="line"><a name="l00102"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#aee9ce0c110739bf8bd3cdd28733ea0e1"> 102</a></span> <span class="keyword">const</span> uint8_t <a class="code" href="namespace_bam_tools_1_1_constants.html#aee9ce0c110739bf8bd3cdd28733ea0e1">BAM_BASECODE_H</a> = 11;</div><div class="line"><a name="l00103"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a991fe0c7ab00edb8dcfcfb633010a55a"> 103</a></span> <span class="keyword">const</span> uint8_t <a class="code" href="namespace_bam_tools_1_1_constants.html#a991fe0c7ab00edb8dcfcfb633010a55a">BAM_BASECODE_K</a> = 12;</div><div class="line"><a name="l00104"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#aac93d588e3bb076ffe14dc8719d0597b"> 104</a></span> <span class="keyword">const</span> uint8_t <a class="code" href="namespace_bam_tools_1_1_constants.html#aac93d588e3bb076ffe14dc8719d0597b">BAM_BASECODE_D</a> = 13;</div><div class="line"><a name="l00105"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a4adb27270a66ea6874aaa4f27623c0ce"> 105</a></span> <span class="keyword">const</span> uint8_t <a class="code" href="namespace_bam_tools_1_1_constants.html#a4adb27270a66ea6874aaa4f27623c0ce">BAM_BASECODE_B</a> = 14;</div><div class="line"><a name="l00106"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a395d8a5eff77f3abb53b0d2bf2952e0d"> 106</a></span> <span class="keyword">const</span> uint8_t <a class="code" href="namespace_bam_tools_1_1_constants.html#a395d8a5eff77f3abb53b0d2bf2952e0d">BAM_BASECODE_N</a> = 15;</div><div class="line"><a name="l00107"></a><span class="lineno"> 107</span> </div><div class="line"><a name="l00108"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#ae670ade3f5071f0744471c7adcb74ba9"> 108</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#ae670ade3f5071f0744471c7adcb74ba9">BAM_DNA_EQUAL</a> = <span class="charliteral">'='</span>;</div><div class="line"><a name="l00109"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a6c0e3b4f5135b1fa1e04f09a9dc6cb8c"> 109</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a6c0e3b4f5135b1fa1e04f09a9dc6cb8c">BAM_DNA_A</a> = <span class="charliteral">'A'</span>;</div><div class="line"><a name="l00110"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a9453e08466bafe404192c37740d8b774"> 110</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a9453e08466bafe404192c37740d8b774">BAM_DNA_C</a> = <span class="charliteral">'C'</span>;</div><div class="line"><a name="l00111"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#abf94325163a7b82ea416e5f972480ec5"> 111</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#abf94325163a7b82ea416e5f972480ec5">BAM_DNA_M</a> = <span class="charliteral">'M'</span>;</div><div class="line"><a name="l00112"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a38de013d628dfdc78ce5c3ebb7cd01ba"> 112</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a38de013d628dfdc78ce5c3ebb7cd01ba">BAM_DNA_G</a> = <span class="charliteral">'G'</span>;</div><div class="line"><a name="l00113"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a58a542eed79ee707009dd28ed3ace18a"> 113</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a58a542eed79ee707009dd28ed3ace18a">BAM_DNA_R</a> = <span class="charliteral">'R'</span>;</div><div class="line"><a name="l00114"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a8619efce7bc47c02d7ca8a9ffa27f5e4"> 114</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a8619efce7bc47c02d7ca8a9ffa27f5e4">BAM_DNA_S</a> = <span class="charliteral">'S'</span>;</div><div class="line"><a name="l00115"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a29542377dc9e447eb458eb115b4cf2a2"> 115</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a29542377dc9e447eb458eb115b4cf2a2">BAM_DNA_V</a> = <span class="charliteral">'V'</span>;</div><div class="line"><a name="l00116"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a2cc240013a9c3f6b19c271a088c60e86"> 116</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a2cc240013a9c3f6b19c271a088c60e86">BAM_DNA_T</a> = <span class="charliteral">'T'</span>;</div><div class="line"><a name="l00117"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#adee5ad65de905fc005c1e60cad193d97"> 117</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#adee5ad65de905fc005c1e60cad193d97">BAM_DNA_W</a> = <span class="charliteral">'W'</span>;</div><div class="line"><a name="l00118"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#afbc767b14d3318295a754112881ca64a"> 118</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#afbc767b14d3318295a754112881ca64a">BAM_DNA_Y</a> = <span class="charliteral">'Y'</span>;</div><div class="line"><a name="l00119"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a16e28e4f2f2a2c7de27d5184fefa1b75"> 119</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a16e28e4f2f2a2c7de27d5184fefa1b75">BAM_DNA_H</a> = <span class="charliteral">'H'</span>;</div><div class="line"><a name="l00120"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a5a57c248035362eba166d501c5792dc3"> 120</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a5a57c248035362eba166d501c5792dc3">BAM_DNA_K</a> = <span class="charliteral">'K'</span>;</div><div class="line"><a name="l00121"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a226bb4b1b71d17c473fac07b0f415726"> 121</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a226bb4b1b71d17c473fac07b0f415726">BAM_DNA_D</a> = <span class="charliteral">'D'</span>;</div><div class="line"><a name="l00122"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a3952ee2392a20ff0fecc0e23e6dbd824"> 122</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a3952ee2392a20ff0fecc0e23e6dbd824">BAM_DNA_B</a> = <span class="charliteral">'B'</span>;</div><div class="line"><a name="l00123"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a151bb15603efbe324e95fc2a92629c15"> 123</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a151bb15603efbe324e95fc2a92629c15">BAM_DNA_N</a> = <span class="charliteral">'N'</span>;</div><div class="line"><a name="l00124"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a4b2587bfc495ede245b2ca396efdd98b"> 124</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a4b2587bfc495ede245b2ca396efdd98b">BAM_DNA_DEL</a> = <span class="charliteral">'-'</span>;</div><div class="line"><a name="l00125"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#ac6b15e4b7dc580741f2e38207a1f828a"> 125</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#ac6b15e4b7dc580741f2e38207a1f828a">BAM_DNA_PAD</a> = <span class="charliteral">'*'</span>;</div><div class="line"><a name="l00126"></a><span class="lineno"> 126</span> </div><div class="line"><a name="l00127"></a><span class="lineno"> 127</span> <span class="comment">// zlib & BGZF constants</span></div><div class="line"><a name="l00128"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#aee658df0c9d9f30f0526649dd47d070a"> 128</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#aee658df0c9d9f30f0526649dd47d070a">GZIP_ID1</a> = 31;</div><div class="line"><a name="l00129"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#af2f43258da96e8f108ef9840af01b28c"> 129</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#af2f43258da96e8f108ef9840af01b28c">GZIP_ID2</a> = 139;</div><div class="line"><a name="l00130"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a1002dc50cdf3efd08d7948bbfcaf358c"> 130</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a1002dc50cdf3efd08d7948bbfcaf358c">CM_DEFLATE</a> = 8;</div><div class="line"><a name="l00131"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a70b443f3505285dfb1fea8eb6f30152e"> 131</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a70b443f3505285dfb1fea8eb6f30152e">FLG_FEXTRA</a> = 4;</div><div class="line"><a name="l00132"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#ae0b04e3c24a621fa9c8aca9593640087"> 132</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#ae0b04e3c24a621fa9c8aca9593640087">OS_UNKNOWN</a> = 255;</div><div class="line"><a name="l00133"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a3aa314e8e6c6b9aba278f2347681e0dd"> 133</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a3aa314e8e6c6b9aba278f2347681e0dd">BGZF_XLEN</a> = 6;</div><div class="line"><a name="l00134"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a93fe5fe12388a82e8fb9a13acda975b6"> 134</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a93fe5fe12388a82e8fb9a13acda975b6">BGZF_ID1</a> = 66;</div><div class="line"><a name="l00135"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#ab052aa80fdea15328df2079c45869069"> 135</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#ab052aa80fdea15328df2079c45869069">BGZF_ID2</a> = 67;</div><div class="line"><a name="l00136"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a447858f9f04354ecb4fc44f459b2e454"> 136</a></span> <span class="keyword">const</span> <span class="keywordtype">char</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a447858f9f04354ecb4fc44f459b2e454">BGZF_LEN</a> = 2;</div><div class="line"><a name="l00137"></a><span class="lineno"> 137</span> </div><div class="line"><a name="l00138"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#ac389ed90be1ed547275053e91574c05c"> 138</a></span> <span class="keyword">const</span> int8_t <a class="code" href="namespace_bam_tools_1_1_constants.html#ac389ed90be1ed547275053e91574c05c">GZIP_WINDOW_BITS</a> = -15;</div><div class="line"><a name="l00139"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a7e609a2244b193c11b17f045322c6638"> 139</a></span> <span class="keyword">const</span> int8_t <a class="code" href="namespace_bam_tools_1_1_constants.html#a7e609a2244b193c11b17f045322c6638">Z_DEFAULT_MEM_LEVEL</a> = 8;</div><div class="line"><a name="l00140"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a8bbc003086d82fb6ee96a23f21629359"> 140</a></span> <span class="keyword">const</span> uint8_t <a class="code" href="namespace_bam_tools_1_1_constants.html#a8bbc003086d82fb6ee96a23f21629359">BGZF_BLOCK_HEADER_LENGTH</a> = 18;</div><div class="line"><a name="l00141"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a304dd2e0508b256210d337020fa3e799"> 141</a></span> <span class="keyword">const</span> uint8_t <a class="code" href="namespace_bam_tools_1_1_constants.html#a304dd2e0508b256210d337020fa3e799">BGZF_BLOCK_FOOTER_LENGTH</a> = 8;</div><div class="line"><a name="l00142"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a862e9d172c9874c27977a8cd33550e75"> 142</a></span> <span class="keyword">const</span> uint32_t <a class="code" href="namespace_bam_tools_1_1_constants.html#a862e9d172c9874c27977a8cd33550e75">BGZF_MAX_BLOCK_SIZE</a> = 65536;</div><div class="line"><a name="l00143"></a><span class="lineno"><a class="line" href="namespace_bam_tools_1_1_constants.html#a203c88971271d392d7a1827bf9ac539c"> 143</a></span> <span class="keyword">const</span> uint32_t <a class="code" href="namespace_bam_tools_1_1_constants.html#a203c88971271d392d7a1827bf9ac539c">BGZF_DEFAULT_BLOCK_SIZE</a> = 65536;</div><div class="line"><a name="l00144"></a><span class="lineno"> 144</span> </div><div class="line"><a name="l00145"></a><span class="lineno"> 145</span> } <span class="comment">// namespace Constants</span></div><div class="line"><a name="l00146"></a><span class="lineno"> 146</span> </div><div class="line"><a name="l00148"></a><span class="lineno"> 148</span> <span class="comment">// -------------------------</span></div><div class="line"><a name="l00149"></a><span class="lineno"> 149</span> <span class="comment">// tag-type helper structs</span></div><div class="line"><a name="l00150"></a><span class="lineno"> 150</span> <span class="comment">// -------------------------</span></div><div class="line"><a name="l00151"></a><span class="lineno"> 151</span> </div><div class="line"><a name="l00152"></a><span class="lineno"> 152</span> <span class="comment">// fail on any types not specified below</span></div><div class="line"><a name="l00153"></a><span class="lineno"> 153</span> <span class="keyword">template</span><<span class="keyword">typename</span> T></div><div class="line"><a name="l00154"></a><span class="lineno"> 154</span> <span class="keyword">struct </span>TagTypeHelper {</div><div class="line"><a name="l00155"></a><span class="lineno"> 155</span>  <span class="keyword">static</span> <span class="keywordtype">bool</span> CanConvertFrom(<span class="keyword">const</span> <span class="keywordtype">char</span>) { assert(<span class="keyword">false</span>); <span class="keywordflow">return</span> <span class="keyword">false</span>; }</div><div class="line"><a name="l00156"></a><span class="lineno"> 156</span>  <span class="keyword">static</span> <span class="keywordtype">bool</span> CanConvertTo(<span class="keyword">const</span> <span class="keywordtype">char</span>) { assert(<span class="keyword">false</span>); <span class="keywordflow">return</span> <span class="keyword">false</span>; }</div><div class="line"><a name="l00157"></a><span class="lineno"> 157</span>  <span class="keyword">static</span> <span class="keywordtype">char</span> TypeCode(<span class="keywordtype">void</span>) { assert(<span class="keyword">false</span>); <span class="keywordflow">return</span> 0; }</div><div class="line"><a name="l00158"></a><span class="lineno"> 158</span> };</div><div class="line"><a name="l00159"></a><span class="lineno"> 159</span> </div><div class="line"><a name="l00160"></a><span class="lineno"> 160</span> <span class="keyword">template</span><></div><div class="line"><a name="l00161"></a><span class="lineno"> 161</span> <span class="keyword">struct </span>TagTypeHelper<uint8_t> {</div><div class="line"><a name="l00162"></a><span class="lineno"> 162</span>  <span class="keyword">static</span> <span class="keywordtype">bool</span> CanConvertFrom(<span class="keyword">const</span> <span class="keywordtype">char</span> c) {</div><div class="line"><a name="l00163"></a><span class="lineno"> 163</span>  <span class="keywordflow">return</span> ( c == <a class="code" href="namespace_bam_tools_1_1_constants.html#a25602acbbce34e865d67d75b9966a4fc">Constants::BAM_TAG_TYPE_ASCII</a> ||</div><div class="line"><a name="l00164"></a><span class="lineno"> 164</span>  c == <a class="code" href="namespace_bam_tools_1_1_constants.html#a0c4f77ed450936979e858e0703324dab">Constants::BAM_TAG_TYPE_UINT8</a> );</div><div class="line"><a name="l00165"></a><span class="lineno"> 165</span>  }</div><div class="line"><a name="l00166"></a><span class="lineno"> 166</span>  <span class="keyword">static</span> <span class="keywordtype">bool</span> CanConvertTo(<span class="keyword">const</span> <span class="keywordtype">char</span> c) {</div><div class="line"><a name="l00167"></a><span class="lineno"> 167</span>  <span class="keywordflow">return</span> ( c == <a class="code" href="namespace_bam_tools_1_1_constants.html#a25602acbbce34e865d67d75b9966a4fc">Constants::BAM_TAG_TYPE_ASCII</a> ||</div><div class="line"><a name="l00168"></a><span class="lineno"> 168</span>  c == <a class="code" href="namespace_bam_tools_1_1_constants.html#a0c4f77ed450936979e858e0703324dab">Constants::BAM_TAG_TYPE_UINT8</a> ||</div><div class="line"><a name="l00169"></a><span class="lineno"> 169</span>  c == <a class="code" href="namespace_bam_tools_1_1_constants.html#a9b7df792a6c644788360152e2cf56a3c">Constants::BAM_TAG_TYPE_UINT16</a> ||</div><div class="line"><a name="l00170"></a><span class="lineno"> 170</span>  c == <a class="code" href="namespace_bam_tools_1_1_constants.html#a657c724f6561af0520aa6c2f4c23f740">Constants::BAM_TAG_TYPE_UINT32</a> );</div><div class="line"><a name="l00171"></a><span class="lineno"> 171</span>  }</div><div class="line"><a name="l00172"></a><span class="lineno"> 172</span> </div><div class="line"><a name="l00173"></a><span class="lineno"> 173</span>  <span class="keyword">static</span> <span class="keywordtype">char</span> TypeCode(<span class="keywordtype">void</span>) { <span class="keywordflow">return</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a0c4f77ed450936979e858e0703324dab">Constants::BAM_TAG_TYPE_UINT8</a>; }</div><div class="line"><a name="l00174"></a><span class="lineno"> 174</span> };</div><div class="line"><a name="l00175"></a><span class="lineno"> 175</span> </div><div class="line"><a name="l00176"></a><span class="lineno"> 176</span> <span class="keyword">template</span><></div><div class="line"><a name="l00177"></a><span class="lineno"> 177</span> <span class="keyword">struct </span>TagTypeHelper<int8_t> {</div><div class="line"><a name="l00178"></a><span class="lineno"> 178</span>  <span class="keyword">static</span> <span class="keywordtype">bool</span> CanConvertFrom(<span class="keyword">const</span> <span class="keywordtype">char</span> c) {</div><div class="line"><a name="l00179"></a><span class="lineno"> 179</span>  <span class="keywordflow">return</span> ( c == <a class="code" href="namespace_bam_tools_1_1_constants.html#a25602acbbce34e865d67d75b9966a4fc">Constants::BAM_TAG_TYPE_ASCII</a> ||</div><div class="line"><a name="l00180"></a><span class="lineno"> 180</span>  c == <a class="code" href="namespace_bam_tools_1_1_constants.html#a8cb4f3703011f90521564830a7f7df01">Constants::BAM_TAG_TYPE_INT8</a> );</div><div class="line"><a name="l00181"></a><span class="lineno"> 181</span>  }</div><div class="line"><a name="l00182"></a><span class="lineno"> 182</span>  <span class="keyword">static</span> <span class="keywordtype">bool</span> CanConvertTo(<span class="keyword">const</span> <span class="keywordtype">char</span> c) {</div><div class="line"><a name="l00183"></a><span class="lineno"> 183</span>  <span class="keywordflow">return</span> ( c == <a class="code" href="namespace_bam_tools_1_1_constants.html#a25602acbbce34e865d67d75b9966a4fc">Constants::BAM_TAG_TYPE_ASCII</a> ||</div><div class="line"><a name="l00184"></a><span class="lineno"> 184</span>  c == <a class="code" href="namespace_bam_tools_1_1_constants.html#a8cb4f3703011f90521564830a7f7df01">Constants::BAM_TAG_TYPE_INT8</a> ||</div><div class="line"><a name="l00185"></a><span class="lineno"> 185</span>  c == <a class="code" href="namespace_bam_tools_1_1_constants.html#aa51e6bf07e0ec1f00072477492d31a57">Constants::BAM_TAG_TYPE_INT16</a> ||</div><div class="line"><a name="l00186"></a><span class="lineno"> 186</span>  c == <a class="code" href="namespace_bam_tools_1_1_constants.html#a20a298552510340fdc2b76c496186884">Constants::BAM_TAG_TYPE_INT32</a> );</div><div class="line"><a name="l00187"></a><span class="lineno"> 187</span>  }</div><div class="line"><a name="l00188"></a><span class="lineno"> 188</span>  <span class="keyword">static</span> <span class="keywordtype">char</span> TypeCode(<span class="keywordtype">void</span>) { <span class="keywordflow">return</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a8cb4f3703011f90521564830a7f7df01">Constants::BAM_TAG_TYPE_INT8</a>; }</div><div class="line"><a name="l00189"></a><span class="lineno"> 189</span> };</div><div class="line"><a name="l00190"></a><span class="lineno"> 190</span> </div><div class="line"><a name="l00191"></a><span class="lineno"> 191</span> <span class="keyword">template</span><></div><div class="line"><a name="l00192"></a><span class="lineno"> 192</span> <span class="keyword">struct </span>TagTypeHelper<uint16_t> {</div><div class="line"><a name="l00193"></a><span class="lineno"> 193</span>  <span class="keyword">static</span> <span class="keywordtype">bool</span> CanConvertFrom(<span class="keyword">const</span> <span class="keywordtype">char</span> c) {</div><div class="line"><a name="l00194"></a><span class="lineno"> 194</span>  <span class="keywordflow">return</span> ( c == <a class="code" href="namespace_bam_tools_1_1_constants.html#a25602acbbce34e865d67d75b9966a4fc">Constants::BAM_TAG_TYPE_ASCII</a> ||</div><div class="line"><a name="l00195"></a><span class="lineno"> 195</span>  c == <a class="code" href="namespace_bam_tools_1_1_constants.html#a0c4f77ed450936979e858e0703324dab">Constants::BAM_TAG_TYPE_UINT8</a> ||</div><div class="line"><a name="l00196"></a><span class="lineno"> 196</span>  c == <a class="code" href="namespace_bam_tools_1_1_constants.html#a9b7df792a6c644788360152e2cf56a3c">Constants::BAM_TAG_TYPE_UINT16</a> );</div><div class="line"><a name="l00197"></a><span class="lineno"> 197</span>  }</div><div class="line"><a name="l00198"></a><span class="lineno"> 198</span>  <span class="keyword">static</span> <span class="keywordtype">bool</span> CanConvertTo(<span class="keyword">const</span> <span class="keywordtype">char</span> c) {</div><div class="line"><a name="l00199"></a><span class="lineno"> 199</span>  <span class="keywordflow">return</span> ( c == <a class="code" href="namespace_bam_tools_1_1_constants.html#a9b7df792a6c644788360152e2cf56a3c">Constants::BAM_TAG_TYPE_UINT16</a> ||</div><div class="line"><a name="l00200"></a><span class="lineno"> 200</span>  c == <a class="code" href="namespace_bam_tools_1_1_constants.html#a657c724f6561af0520aa6c2f4c23f740">Constants::BAM_TAG_TYPE_UINT32</a>);</div><div class="line"><a name="l00201"></a><span class="lineno"> 201</span>  }</div><div class="line"><a name="l00202"></a><span class="lineno"> 202</span>  <span class="keyword">static</span> <span class="keywordtype">char</span> TypeCode(<span class="keywordtype">void</span>) { <span class="keywordflow">return</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a9b7df792a6c644788360152e2cf56a3c">Constants::BAM_TAG_TYPE_UINT16</a>; }</div><div class="line"><a name="l00203"></a><span class="lineno"> 203</span> };</div><div class="line"><a name="l00204"></a><span class="lineno"> 204</span> </div><div class="line"><a name="l00205"></a><span class="lineno"> 205</span> <span class="keyword">template</span><></div><div class="line"><a name="l00206"></a><span class="lineno"> 206</span> <span class="keyword">struct </span>TagTypeHelper<int16_t> {</div><div class="line"><a name="l00207"></a><span class="lineno"> 207</span>  <span class="keyword">static</span> <span class="keywordtype">bool</span> CanConvertFrom(<span class="keyword">const</span> <span class="keywordtype">char</span> c) {</div><div class="line"><a name="l00208"></a><span class="lineno"> 208</span>  <span class="keywordflow">return</span> ( c == <a class="code" href="namespace_bam_tools_1_1_constants.html#a25602acbbce34e865d67d75b9966a4fc">Constants::BAM_TAG_TYPE_ASCII</a> ||</div><div class="line"><a name="l00209"></a><span class="lineno"> 209</span>  c == <a class="code" href="namespace_bam_tools_1_1_constants.html#a8cb4f3703011f90521564830a7f7df01">Constants::BAM_TAG_TYPE_INT8</a> ||</div><div class="line"><a name="l00210"></a><span class="lineno"> 210</span>  c == <a class="code" href="namespace_bam_tools_1_1_constants.html#aa51e6bf07e0ec1f00072477492d31a57">Constants::BAM_TAG_TYPE_INT16</a> );</div><div class="line"><a name="l00211"></a><span class="lineno"> 211</span>  }</div><div class="line"><a name="l00212"></a><span class="lineno"> 212</span>  <span class="keyword">static</span> <span class="keywordtype">bool</span> CanConvertTo(<span class="keyword">const</span> <span class="keywordtype">char</span> c) {</div><div class="line"><a name="l00213"></a><span class="lineno"> 213</span>  <span class="keywordflow">return</span> ( c == <a class="code" href="namespace_bam_tools_1_1_constants.html#aa51e6bf07e0ec1f00072477492d31a57">Constants::BAM_TAG_TYPE_INT16</a> ||</div><div class="line"><a name="l00214"></a><span class="lineno"> 214</span>  c == <a class="code" href="namespace_bam_tools_1_1_constants.html#a20a298552510340fdc2b76c496186884">Constants::BAM_TAG_TYPE_INT32</a>);</div><div class="line"><a name="l00215"></a><span class="lineno"> 215</span>  }</div><div class="line"><a name="l00216"></a><span class="lineno"> 216</span>  <span class="keyword">static</span> <span class="keywordtype">char</span> TypeCode(<span class="keywordtype">void</span>) { <span class="keywordflow">return</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#aa51e6bf07e0ec1f00072477492d31a57">Constants::BAM_TAG_TYPE_INT16</a>; }</div><div class="line"><a name="l00217"></a><span class="lineno"> 217</span> };</div><div class="line"><a name="l00218"></a><span class="lineno"> 218</span> </div><div class="line"><a name="l00219"></a><span class="lineno"> 219</span> <span class="keyword">template</span><></div><div class="line"><a name="l00220"></a><span class="lineno"> 220</span> <span class="keyword">struct </span>TagTypeHelper<uint32_t> {</div><div class="line"><a name="l00221"></a><span class="lineno"> 221</span>  <span class="keyword">static</span> <span class="keywordtype">bool</span> CanConvertFrom(<span class="keyword">const</span> <span class="keywordtype">char</span> c) {</div><div class="line"><a name="l00222"></a><span class="lineno"> 222</span>  <span class="keywordflow">return</span> ( c == <a class="code" href="namespace_bam_tools_1_1_constants.html#a25602acbbce34e865d67d75b9966a4fc">Constants::BAM_TAG_TYPE_ASCII</a> ||</div><div class="line"><a name="l00223"></a><span class="lineno"> 223</span>  c == <a class="code" href="namespace_bam_tools_1_1_constants.html#a0c4f77ed450936979e858e0703324dab">Constants::BAM_TAG_TYPE_UINT8</a> ||</div><div class="line"><a name="l00224"></a><span class="lineno"> 224</span>  c == <a class="code" href="namespace_bam_tools_1_1_constants.html#a9b7df792a6c644788360152e2cf56a3c">Constants::BAM_TAG_TYPE_UINT16</a> ||</div><div class="line"><a name="l00225"></a><span class="lineno"> 225</span>  c == <a class="code" href="namespace_bam_tools_1_1_constants.html#a657c724f6561af0520aa6c2f4c23f740">Constants::BAM_TAG_TYPE_UINT32</a> );</div><div class="line"><a name="l00226"></a><span class="lineno"> 226</span>  }</div><div class="line"><a name="l00227"></a><span class="lineno"> 227</span>  <span class="keyword">static</span> <span class="keywordtype">bool</span> CanConvertTo(<span class="keyword">const</span> <span class="keywordtype">char</span> c) {</div><div class="line"><a name="l00228"></a><span class="lineno"> 228</span>  <span class="keywordflow">return</span> ( c == <a class="code" href="namespace_bam_tools_1_1_constants.html#a657c724f6561af0520aa6c2f4c23f740">Constants::BAM_TAG_TYPE_UINT32</a> );</div><div class="line"><a name="l00229"></a><span class="lineno"> 229</span>  }</div><div class="line"><a name="l00230"></a><span class="lineno"> 230</span>  <span class="keyword">static</span> <span class="keywordtype">char</span> TypeCode(<span class="keywordtype">void</span>) { <span class="keywordflow">return</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a657c724f6561af0520aa6c2f4c23f740">Constants::BAM_TAG_TYPE_UINT32</a>; }</div><div class="line"><a name="l00231"></a><span class="lineno"> 231</span> };</div><div class="line"><a name="l00232"></a><span class="lineno"> 232</span> </div><div class="line"><a name="l00233"></a><span class="lineno"> 233</span> <span class="keyword">template</span><></div><div class="line"><a name="l00234"></a><span class="lineno"> 234</span> <span class="keyword">struct </span>TagTypeHelper<int32_t> {</div><div class="line"><a name="l00235"></a><span class="lineno"> 235</span>  <span class="keyword">static</span> <span class="keywordtype">bool</span> CanConvertFrom(<span class="keyword">const</span> <span class="keywordtype">char</span> c) {</div><div class="line"><a name="l00236"></a><span class="lineno"> 236</span>  <span class="keywordflow">return</span> ( c == <a class="code" href="namespace_bam_tools_1_1_constants.html#a25602acbbce34e865d67d75b9966a4fc">Constants::BAM_TAG_TYPE_ASCII</a> ||</div><div class="line"><a name="l00237"></a><span class="lineno"> 237</span>  c == <a class="code" href="namespace_bam_tools_1_1_constants.html#a8cb4f3703011f90521564830a7f7df01">Constants::BAM_TAG_TYPE_INT8</a> ||</div><div class="line"><a name="l00238"></a><span class="lineno"> 238</span>  c == <a class="code" href="namespace_bam_tools_1_1_constants.html#aa51e6bf07e0ec1f00072477492d31a57">Constants::BAM_TAG_TYPE_INT16</a> ||</div><div class="line"><a name="l00239"></a><span class="lineno"> 239</span>  c == <a class="code" href="namespace_bam_tools_1_1_constants.html#a20a298552510340fdc2b76c496186884">Constants::BAM_TAG_TYPE_INT32</a> );</div><div class="line"><a name="l00240"></a><span class="lineno"> 240</span>  }</div><div class="line"><a name="l00241"></a><span class="lineno"> 241</span>  <span class="keyword">static</span> <span class="keywordtype">bool</span> CanConvertTo(<span class="keyword">const</span> <span class="keywordtype">char</span> c) {</div><div class="line"><a name="l00242"></a><span class="lineno"> 242</span>  <span class="keywordflow">return</span> ( c == <a class="code" href="namespace_bam_tools_1_1_constants.html#a20a298552510340fdc2b76c496186884">Constants::BAM_TAG_TYPE_INT32</a> );</div><div class="line"><a name="l00243"></a><span class="lineno"> 243</span>  }</div><div class="line"><a name="l00244"></a><span class="lineno"> 244</span>  <span class="keyword">static</span> <span class="keywordtype">char</span> TypeCode(<span class="keywordtype">void</span>) { <span class="keywordflow">return</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a20a298552510340fdc2b76c496186884">Constants::BAM_TAG_TYPE_INT32</a>; }</div><div class="line"><a name="l00245"></a><span class="lineno"> 245</span> };</div><div class="line"><a name="l00246"></a><span class="lineno"> 246</span> </div><div class="line"><a name="l00247"></a><span class="lineno"> 247</span> <span class="keyword">template</span><></div><div class="line"><a name="l00248"></a><span class="lineno"> 248</span> <span class="keyword">struct </span>TagTypeHelper<float> {</div><div class="line"><a name="l00249"></a><span class="lineno"> 249</span>  <span class="keyword">static</span> <span class="keywordtype">bool</span> CanConvertFrom(<span class="keyword">const</span> <span class="keywordtype">char</span> c) {</div><div class="line"><a name="l00250"></a><span class="lineno"> 250</span>  <span class="keywordflow">return</span> ( c == <a class="code" href="namespace_bam_tools_1_1_constants.html#a25602acbbce34e865d67d75b9966a4fc">Constants::BAM_TAG_TYPE_ASCII</a> ||</div><div class="line"><a name="l00251"></a><span class="lineno"> 251</span>  c == <a class="code" href="namespace_bam_tools_1_1_constants.html#a0c4f77ed450936979e858e0703324dab">Constants::BAM_TAG_TYPE_UINT8</a> ||</div><div class="line"><a name="l00252"></a><span class="lineno"> 252</span>  c == <a class="code" href="namespace_bam_tools_1_1_constants.html#a8cb4f3703011f90521564830a7f7df01">Constants::BAM_TAG_TYPE_INT8</a> ||</div><div class="line"><a name="l00253"></a><span class="lineno"> 253</span>  c == <a class="code" href="namespace_bam_tools_1_1_constants.html#a9b7df792a6c644788360152e2cf56a3c">Constants::BAM_TAG_TYPE_UINT16</a> ||</div><div class="line"><a name="l00254"></a><span class="lineno"> 254</span>  c == <a class="code" href="namespace_bam_tools_1_1_constants.html#aa51e6bf07e0ec1f00072477492d31a57">Constants::BAM_TAG_TYPE_INT16</a> ||</div><div class="line"><a name="l00255"></a><span class="lineno"> 255</span>  c == <a class="code" href="namespace_bam_tools_1_1_constants.html#a657c724f6561af0520aa6c2f4c23f740">Constants::BAM_TAG_TYPE_UINT32</a> ||</div><div class="line"><a name="l00256"></a><span class="lineno"> 256</span>  c == <a class="code" href="namespace_bam_tools_1_1_constants.html#a20a298552510340fdc2b76c496186884">Constants::BAM_TAG_TYPE_INT32</a> ||</div><div class="line"><a name="l00257"></a><span class="lineno"> 257</span>  c == <a class="code" href="namespace_bam_tools_1_1_constants.html#a5f4b4689a7898fde204f9f3275a6bcdf">Constants::BAM_TAG_TYPE_FLOAT</a>);</div><div class="line"><a name="l00258"></a><span class="lineno"> 258</span>  }</div><div class="line"><a name="l00259"></a><span class="lineno"> 259</span>  <span class="keyword">static</span> <span class="keywordtype">bool</span> CanConvertTo(<span class="keyword">const</span> <span class="keywordtype">char</span> c) {</div><div class="line"><a name="l00260"></a><span class="lineno"> 260</span>  <span class="keywordflow">return</span> ( c == <a class="code" href="namespace_bam_tools_1_1_constants.html#a5f4b4689a7898fde204f9f3275a6bcdf">Constants::BAM_TAG_TYPE_FLOAT</a> );</div><div class="line"><a name="l00261"></a><span class="lineno"> 261</span>  }</div><div class="line"><a name="l00262"></a><span class="lineno"> 262</span>  <span class="keyword">static</span> <span class="keywordtype">char</span> TypeCode(<span class="keywordtype">void</span>) { <span class="keywordflow">return</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a5f4b4689a7898fde204f9f3275a6bcdf">Constants::BAM_TAG_TYPE_FLOAT</a>; }</div><div class="line"><a name="l00263"></a><span class="lineno"> 263</span> };</div><div class="line"><a name="l00264"></a><span class="lineno"> 264</span> </div><div class="line"><a name="l00265"></a><span class="lineno"> 265</span> <span class="keyword">template</span><></div><div class="line"><a name="l00266"></a><span class="lineno"> 266</span> <span class="keyword">struct </span>TagTypeHelper<std::string> {</div><div class="line"><a name="l00267"></a><span class="lineno"> 267</span>  <span class="keyword">static</span> <span class="keywordtype">bool</span> CanConvertFrom(<span class="keyword">const</span> <span class="keywordtype">char</span> c) {</div><div class="line"><a name="l00268"></a><span class="lineno"> 268</span>  <span class="keywordflow">return</span> ( c == <a class="code" href="namespace_bam_tools_1_1_constants.html#a1f432cf41f5c315f8da46f302ab9cdc4">Constants::BAM_TAG_TYPE_HEX</a> ||</div><div class="line"><a name="l00269"></a><span class="lineno"> 269</span>  c == <a class="code" href="namespace_bam_tools_1_1_constants.html#a7f2d8fb36a83c9f0b14ec88100f69d62">Constants::BAM_TAG_TYPE_STRING</a> );</div><div class="line"><a name="l00270"></a><span class="lineno"> 270</span>  }</div><div class="line"><a name="l00271"></a><span class="lineno"> 271</span>  <span class="keyword">static</span> <span class="keywordtype">bool</span> CanConvertTo(<span class="keyword">const</span> <span class="keywordtype">char</span> c) {</div><div class="line"><a name="l00272"></a><span class="lineno"> 272</span>  <span class="keywordflow">return</span> ( c == <a class="code" href="namespace_bam_tools_1_1_constants.html#a1f432cf41f5c315f8da46f302ab9cdc4">Constants::BAM_TAG_TYPE_HEX</a> ||</div><div class="line"><a name="l00273"></a><span class="lineno"> 273</span>  c == <a class="code" href="namespace_bam_tools_1_1_constants.html#a7f2d8fb36a83c9f0b14ec88100f69d62">Constants::BAM_TAG_TYPE_STRING</a> );</div><div class="line"><a name="l00274"></a><span class="lineno"> 274</span>  }</div><div class="line"><a name="l00275"></a><span class="lineno"> 275</span>  <span class="keyword">static</span> <span class="keywordtype">char</span> TypeCode(<span class="keywordtype">void</span>) { <span class="keywordflow">return</span> <a class="code" href="namespace_bam_tools_1_1_constants.html#a7f2d8fb36a83c9f0b14ec88100f69d62">Constants::BAM_TAG_TYPE_STRING</a>; }</div><div class="line"><a name="l00276"></a><span class="lineno"> 276</span> };</div><div class="line"><a name="l00277"></a><span class="lineno"> 277</span> </div><div class="line"><a name="l00279"></a><span class="lineno"> 279</span> </div><div class="line"><a name="l00280"></a><span class="lineno"> 280</span> } <span class="comment">// namespace BamTools</span></div><div class="line"><a name="l00281"></a><span class="lineno"> 281</span> </div><div class="line"><a name="l00282"></a><span class="lineno"> 282</span> <span class="preprocessor">#endif // BAM_CONSTANTS_H</span></div><div class="ttc" id="namespace_bam_tools_1_1_constants_html_af58d5abf790943c6730e1709456d342a"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#af58d5abf790943c6730e1709456d342a">BamTools::Constants::BAM_BASECODE_R</a></div><div class="ttdeci">const uint8_t BAM_BASECODE_R</div><div class="ttdef"><b>Definition:</b> BamConstants.h:96</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a15ed7a86971ec7829de7f711429546b7"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a15ed7a86971ec7829de7f711429546b7">BamTools::Constants::BAM_CIGAR_MISMATCH</a></div><div class="ttdeci">const uint8_t BAM_CIGAR_MISMATCH</div><div class="ttdef"><b>Definition:</b> BamConstants.h:57</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_aeb8cfe26e4d02dd3147ef1535f22ab4b"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#aeb8cfe26e4d02dd3147ef1535f22ab4b">BamTools::Constants::BAM_CIGAR_HARDCLIP_CHAR</a></div><div class="ttdeci">const char BAM_CIGAR_HARDCLIP_CHAR</div><div class="ttdef"><b>Definition:</b> BamConstants.h:64</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_aee9ce0c110739bf8bd3cdd28733ea0e1"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#aee9ce0c110739bf8bd3cdd28733ea0e1">BamTools::Constants::BAM_BASECODE_H</a></div><div class="ttdeci">const uint8_t BAM_BASECODE_H</div><div class="ttdef"><b>Definition:</b> BamConstants.h:102</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_aab7577dd1e0aa486b2c41b571246734a"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#aab7577dd1e0aa486b2c41b571246734a">BamTools::Constants::BAM_SIZEOF_INT</a></div><div class="ttdeci">const uint8_t BAM_SIZEOF_INT</div><div class="ttdef"><b>Definition:</b> BamConstants.h:24</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a5f4b4689a7898fde204f9f3275a6bcdf"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a5f4b4689a7898fde204f9f3275a6bcdf">BamTools::Constants::BAM_TAG_TYPE_FLOAT</a></div><div class="ttdeci">const char BAM_TAG_TYPE_FLOAT</div><div class="ttdef"><b>Definition:</b> BamConstants.h:80</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_afca0644edb22a67ca38e2547df9d07de"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#afca0644edb22a67ca38e2547df9d07de">BamTools::Constants::BAM_CIGAR_HARDCLIP</a></div><div class="ttdeci">const uint8_t BAM_CIGAR_HARDCLIP</div><div class="ttdef"><b>Definition:</b> BamConstants.h:54</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a304dd2e0508b256210d337020fa3e799"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a304dd2e0508b256210d337020fa3e799">BamTools::Constants::BGZF_BLOCK_FOOTER_LENGTH</a></div><div class="ttdeci">const uint8_t BGZF_BLOCK_FOOTER_LENGTH</div><div class="ttdef"><b>Definition:</b> BamConstants.h:141</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a87cb872b98fac4e5bfa832c3b8b6d652"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a87cb872b98fac4e5bfa832c3b8b6d652">BamTools::Constants::BAM_CIGAR_PAD_CHAR</a></div><div class="ttdeci">const char BAM_CIGAR_PAD_CHAR</div><div class="ttdef"><b>Definition:</b> BamConstants.h:65</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a6b380ae8d3813f34d784ffe744009443"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a6b380ae8d3813f34d784ffe744009443">BamTools::Constants::BAM_BASECODE_EQUAL</a></div><div class="ttdeci">const uint8_t BAM_BASECODE_EQUAL</div><div class="ttdef"><b>Definition:</b> BamConstants.h:91</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a9b7df792a6c644788360152e2cf56a3c"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a9b7df792a6c644788360152e2cf56a3c">BamTools::Constants::BAM_TAG_TYPE_UINT16</a></div><div class="ttdeci">const char BAM_TAG_TYPE_UINT16</div><div class="ttdef"><b>Definition:</b> BamConstants.h:77</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_aff396fa749e1439449433191eae166c7"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#aff396fa749e1439449433191eae166c7">BamTools::Constants::BAM_TAG_ARRAYBASE_SIZE</a></div><div class="ttdeci">const uint8_t BAM_TAG_ARRAYBASE_SIZE</div><div class="ttdef"><b>Definition:</b> BamConstants.h:87</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a55cea93676b7c14b9f56c069feec81ae"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a55cea93676b7c14b9f56c069feec81ae">BamTools::Constants::BAM_ALIGNMENT_SECONDARY</a></div><div class="ttdeci">const int BAM_ALIGNMENT_SECONDARY</div><div class="ttdef"><b>Definition:</b> BamConstants.h:43</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a7e609a2244b193c11b17f045322c6638"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a7e609a2244b193c11b17f045322c6638">BamTools::Constants::Z_DEFAULT_MEM_LEVEL</a></div><div class="ttdeci">const int8_t Z_DEFAULT_MEM_LEVEL</div><div class="ttdef"><b>Definition:</b> BamConstants.h:139</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a29e1115d2b79fc100ecab38adb40db67"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a29e1115d2b79fc100ecab38adb40db67">BamTools::Constants::BAM_BASECODE_M</a></div><div class="ttdeci">const uint8_t BAM_BASECODE_M</div><div class="ttdef"><b>Definition:</b> BamConstants.h:94</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a2a8e9fd624e8d5e320c755f06452bfdc"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a2a8e9fd624e8d5e320c755f06452bfdc">BamTools::Constants::BAM_CIGAR_SHIFT</a></div><div class="ttdeci">const int BAM_CIGAR_SHIFT</div><div class="ttdef"><b>Definition:</b> BamConstants.h:69</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_abf94325163a7b82ea416e5f972480ec5"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#abf94325163a7b82ea416e5f972480ec5">BamTools::Constants::BAM_DNA_M</a></div><div class="ttdeci">const char BAM_DNA_M</div><div class="ttdef"><b>Definition:</b> BamConstants.h:111</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a395d8a5eff77f3abb53b0d2bf2952e0d"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a395d8a5eff77f3abb53b0d2bf2952e0d">BamTools::Constants::BAM_BASECODE_N</a></div><div class="ttdeci">const uint8_t BAM_BASECODE_N</div><div class="ttdef"><b>Definition:</b> BamConstants.h:106</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_ad0df071315bb6be4d088850ac4951a26"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#ad0df071315bb6be4d088850ac4951a26">BamTools::Constants::BAM_TAG_TYPESIZE</a></div><div class="ttdeci">const uint8_t BAM_TAG_TYPESIZE</div><div class="ttdef"><b>Definition:</b> BamConstants.h:86</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a8cb4f3703011f90521564830a7f7df01"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a8cb4f3703011f90521564830a7f7df01">BamTools::Constants::BAM_TAG_TYPE_INT8</a></div><div class="ttdeci">const char BAM_TAG_TYPE_INT8</div><div class="ttdef"><b>Definition:</b> BamConstants.h:74</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a58358f7f33aff9bb47d3cebd6495cf46"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a58358f7f33aff9bb47d3cebd6495cf46">BamTools::Constants::BAM_CIGAR_INS</a></div><div class="ttdeci">const uint8_t BAM_CIGAR_INS</div><div class="ttdef"><b>Definition:</b> BamConstants.h:50</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a5df64e7330adc1a424c63a9df346b714"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a5df64e7330adc1a424c63a9df346b714">BamTools::Constants::BAM_CIGAR_LOOKUP</a></div><div class="ttdeci">const char *const BAM_CIGAR_LOOKUP</div><div class="ttdef"><b>Definition:</b> BamConstants.h:48</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a683a67e3dcf74ab031fc2da70befe686"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a683a67e3dcf74ab031fc2da70befe686">BamTools::Constants::BAM_CORE_SIZE</a></div><div class="ttdeci">const uint8_t BAM_CORE_SIZE</div><div class="ttdef"><b>Definition:</b> BamConstants.h:31</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a37050e3b292a5b87c30bd374c429cfed"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a37050e3b292a5b87c30bd374c429cfed">BamTools::Constants::BAM_ALIGNMENT_DUPLICATE</a></div><div class="ttdeci">const int BAM_ALIGNMENT_DUPLICATE</div><div class="ttdef"><b>Definition:</b> BamConstants.h:45</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a10fad45bead6c1c0e05b7c7ccd67b8e3"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a10fad45bead6c1c0e05b7c7ccd67b8e3">BamTools::Constants::BAM_BASECODE_S</a></div><div class="ttdeci">const uint8_t BAM_BASECODE_S</div><div class="ttdef"><b>Definition:</b> BamConstants.h:97</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a942c3eb75b622e7da410107c22ee01dd"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a942c3eb75b622e7da410107c22ee01dd">BamTools::Constants::BAM_ALIGNMENT_REVERSE_STRAND</a></div><div class="ttdeci">const int BAM_ALIGNMENT_REVERSE_STRAND</div><div class="ttdef"><b>Definition:</b> BamConstants.h:39</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a20a298552510340fdc2b76c496186884"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a20a298552510340fdc2b76c496186884">BamTools::Constants::BAM_TAG_TYPE_INT32</a></div><div class="ttdeci">const char BAM_TAG_TYPE_INT32</div><div class="ttdef"><b>Definition:</b> BamConstants.h:78</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a8619efce7bc47c02d7ca8a9ffa27f5e4"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a8619efce7bc47c02d7ca8a9ffa27f5e4">BamTools::Constants::BAM_DNA_S</a></div><div class="ttdeci">const char BAM_DNA_S</div><div class="ttdef"><b>Definition:</b> BamConstants.h:114</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a58a542eed79ee707009dd28ed3ace18a"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a58a542eed79ee707009dd28ed3ace18a">BamTools::Constants::BAM_DNA_R</a></div><div class="ttdeci">const char BAM_DNA_R</div><div class="ttdef"><b>Definition:</b> BamConstants.h:113</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a8bbc003086d82fb6ee96a23f21629359"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a8bbc003086d82fb6ee96a23f21629359">BamTools::Constants::BGZF_BLOCK_HEADER_LENGTH</a></div><div class="ttdeci">const uint8_t BGZF_BLOCK_HEADER_LENGTH</div><div class="ttdef"><b>Definition:</b> BamConstants.h:140</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_ac389ed90be1ed547275053e91574c05c"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#ac389ed90be1ed547275053e91574c05c">BamTools::Constants::GZIP_WINDOW_BITS</a></div><div class="ttdeci">const int8_t GZIP_WINDOW_BITS</div><div class="ttdef"><b>Definition:</b> BamConstants.h:138</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_ac6b15e4b7dc580741f2e38207a1f828a"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#ac6b15e4b7dc580741f2e38207a1f828a">BamTools::Constants::BAM_DNA_PAD</a></div><div class="ttdeci">const char BAM_DNA_PAD</div><div class="ttdef"><b>Definition:</b> BamConstants.h:125</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_afbc767b14d3318295a754112881ca64a"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#afbc767b14d3318295a754112881ca64a">BamTools::Constants::BAM_DNA_Y</a></div><div class="ttdeci">const char BAM_DNA_Y</div><div class="ttdef"><b>Definition:</b> BamConstants.h:118</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a507d614e3a07eda97c51c9d5a4ed5d10"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a507d614e3a07eda97c51c9d5a4ed5d10">BamTools::Constants::BAM_BASECODE_W</a></div><div class="ttdeci">const uint8_t BAM_BASECODE_W</div><div class="ttdef"><b>Definition:</b> BamConstants.h:100</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a3aa314e8e6c6b9aba278f2347681e0dd"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a3aa314e8e6c6b9aba278f2347681e0dd">BamTools::Constants::BGZF_XLEN</a></div><div class="ttdeci">const char BGZF_XLEN</div><div class="ttdef"><b>Definition:</b> BamConstants.h:133</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a8e2e4a56c82f139cd47a520ed588a67c"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a8e2e4a56c82f139cd47a520ed588a67c">BamTools::Constants::BAM_CIGAR_MASK</a></div><div class="ttdeci">const int BAM_CIGAR_MASK</div><div class="ttdef"><b>Definition:</b> BamConstants.h:70</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a4c4976bb95ab86fda4ebdc1af64488df"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a4c4976bb95ab86fda4ebdc1af64488df">BamTools::Constants::BAM_BASECODE_T</a></div><div class="ttdeci">const uint8_t BAM_BASECODE_T</div><div class="ttdef"><b>Definition:</b> BamConstants.h:99</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_aeb3c4065636d76514199ee8f8bb32ba0"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#aeb3c4065636d76514199ee8f8bb32ba0">BamTools::Constants::BAM_ALIGNMENT_MATE_UNMAPPED</a></div><div class="ttdeci">const int BAM_ALIGNMENT_MATE_UNMAPPED</div><div class="ttdef"><b>Definition:</b> BamConstants.h:38</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a16e28e4f2f2a2c7de27d5184fefa1b75"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a16e28e4f2f2a2c7de27d5184fefa1b75">BamTools::Constants::BAM_DNA_H</a></div><div class="ttdeci">const char BAM_DNA_H</div><div class="ttdef"><b>Definition:</b> BamConstants.h:119</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a8f879d2da352f2ada6f1cf232203fa00"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a8f879d2da352f2ada6f1cf232203fa00">BamTools::Constants::BAM_ALIGNMENT_READ_1</a></div><div class="ttdeci">const int BAM_ALIGNMENT_READ_1</div><div class="ttdef"><b>Definition:</b> BamConstants.h:41</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a226bb4b1b71d17c473fac07b0f415726"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a226bb4b1b71d17c473fac07b0f415726">BamTools::Constants::BAM_DNA_D</a></div><div class="ttdeci">const char BAM_DNA_D</div><div class="ttdef"><b>Definition:</b> BamConstants.h:121</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a34b5b378b1c97f6c65e0b924e9e6eca3"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a34b5b378b1c97f6c65e0b924e9e6eca3">BamTools::Constants::BAM_CIGAR_INS_CHAR</a></div><div class="ttdeci">const char BAM_CIGAR_INS_CHAR</div><div class="ttdef"><b>Definition:</b> BamConstants.h:60</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a85a206d07dc03d3c54987e38ea9ebddb"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a85a206d07dc03d3c54987e38ea9ebddb">BamTools::Constants::BAM_DNA_LOOKUP</a></div><div class="ttdeci">const char *const BAM_DNA_LOOKUP</div><div class="ttdef"><b>Definition:</b> BamConstants.h:90</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a6c0e3b4f5135b1fa1e04f09a9dc6cb8c"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a6c0e3b4f5135b1fa1e04f09a9dc6cb8c">BamTools::Constants::BAM_DNA_A</a></div><div class="ttdeci">const char BAM_DNA_A</div><div class="ttdef"><b>Definition:</b> BamConstants.h:109</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a2cc240013a9c3f6b19c271a088c60e86"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a2cc240013a9c3f6b19c271a088c60e86">BamTools::Constants::BAM_DNA_T</a></div><div class="ttdeci">const char BAM_DNA_T</div><div class="ttdef"><b>Definition:</b> BamConstants.h:116</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_aac93d588e3bb076ffe14dc8719d0597b"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#aac93d588e3bb076ffe14dc8719d0597b">BamTools::Constants::BAM_BASECODE_D</a></div><div class="ttdeci">const uint8_t BAM_BASECODE_D</div><div class="ttdef"><b>Definition:</b> BamConstants.h:104</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a7416fc35d41b4eea72a07f8b4bf202ba"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a7416fc35d41b4eea72a07f8b4bf202ba">BamTools::Constants::BAM_CIGAR_DEL</a></div><div class="ttdeci">const uint8_t BAM_CIGAR_DEL</div><div class="ttdef"><b>Definition:</b> BamConstants.h:51</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_adf8b2798aa1bdbcf114f0322c8e3d3f8"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#adf8b2798aa1bdbcf114f0322c8e3d3f8">BamTools::Constants::BAM_CIGAR_SOFTCLIP</a></div><div class="ttdeci">const uint8_t BAM_CIGAR_SOFTCLIP</div><div class="ttdef"><b>Definition:</b> BamConstants.h:53</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a4b2587bfc495ede245b2ca396efdd98b"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a4b2587bfc495ede245b2ca396efdd98b">BamTools::Constants::BAM_DNA_DEL</a></div><div class="ttdeci">const char BAM_DNA_DEL</div><div class="ttdef"><b>Definition:</b> BamConstants.h:124</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a53c2f04fc2e633f61e8f39264b6ad0b0"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a53c2f04fc2e633f61e8f39264b6ad0b0">BamTools::Constants::BAM_TAG_TYPE_ARRAY</a></div><div class="ttdeci">const char BAM_TAG_TYPE_ARRAY</div><div class="ttdef"><b>Definition:</b> BamConstants.h:83</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a4f333c53a00ae1b2f2cf24710f380de9"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a4f333c53a00ae1b2f2cf24710f380de9">BamTools::Constants::BAM_CORE_BUFFER_SIZE</a></div><div class="ttdeci">const uint8_t BAM_CORE_BUFFER_SIZE</div><div class="ttdef"><b>Definition:</b> BamConstants.h:32</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_aee658df0c9d9f30f0526649dd47d070a"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#aee658df0c9d9f30f0526649dd47d070a">BamTools::Constants::GZIP_ID1</a></div><div class="ttdeci">const char GZIP_ID1</div><div class="ttdef"><b>Definition:</b> BamConstants.h:128</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a4c5fb54257c31e13169dbdfdec7ec9be"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a4c5fb54257c31e13169dbdfdec7ec9be">BamTools::Constants::BAM_CIGAR_SOFTCLIP_CHAR</a></div><div class="ttdeci">const char BAM_CIGAR_SOFTCLIP_CHAR</div><div class="ttdef"><b>Definition:</b> BamConstants.h:63</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_aa07a8f5b5806d868253dda7bf08f3516"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#aa07a8f5b5806d868253dda7bf08f3516">BamTools::Constants::BAM_HEADER_MAGIC_LENGTH</a></div><div class="ttdeci">const uint8_t BAM_HEADER_MAGIC_LENGTH</div><div class="ttdef"><b>Definition:</b> BamConstants.h:28</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a991fe0c7ab00edb8dcfcfb633010a55a"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a991fe0c7ab00edb8dcfcfb633010a55a">BamTools::Constants::BAM_BASECODE_K</a></div><div class="ttdeci">const uint8_t BAM_BASECODE_K</div><div class="ttdef"><b>Definition:</b> BamConstants.h:103</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a0af300f2f62e62839a888338e9009ada"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a0af300f2f62e62839a888338e9009ada">BamTools::Constants::BAM_ALIGNMENT_UNMAPPED</a></div><div class="ttdeci">const int BAM_ALIGNMENT_UNMAPPED</div><div class="ttdef"><b>Definition:</b> BamConstants.h:37</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a6fe3a16d10c529664c82a3c561dd0260"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a6fe3a16d10c529664c82a3c561dd0260">BamTools::Constants::BAM_ALIGNMENT_QC_FAILED</a></div><div class="ttdeci">const int BAM_ALIGNMENT_QC_FAILED</div><div class="ttdef"><b>Definition:</b> BamConstants.h:44</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a2e275e65b17bd297c12e3fee1345308d"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a2e275e65b17bd297c12e3fee1345308d">BamTools::Constants::BAM_CIGAR_PAD</a></div><div class="ttdeci">const uint8_t BAM_CIGAR_PAD</div><div class="ttdef"><b>Definition:</b> BamConstants.h:55</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_ab052aa80fdea15328df2079c45869069"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#ab052aa80fdea15328df2079c45869069">BamTools::Constants::BGZF_ID2</a></div><div class="ttdeci">const char BGZF_ID2</div><div class="ttdef"><b>Definition:</b> BamConstants.h:135</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_aa82388acae7dc4aa8419e38ea34907d0"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#aa82388acae7dc4aa8419e38ea34907d0">BamTools::Constants::BAM_CIGAR_MATCH</a></div><div class="ttdeci">const uint8_t BAM_CIGAR_MATCH</div><div class="ttdef"><b>Definition:</b> BamConstants.h:49</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_aa57cf890a2ac91ba279541f0e924ba0b"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#aa57cf890a2ac91ba279541f0e924ba0b">BamTools::Constants::BAM_BASECODE_Y</a></div><div class="ttdeci">const uint8_t BAM_BASECODE_Y</div><div class="ttdef"><b>Definition:</b> BamConstants.h:101</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a1002dc50cdf3efd08d7948bbfcaf358c"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a1002dc50cdf3efd08d7948bbfcaf358c">BamTools::Constants::CM_DEFLATE</a></div><div class="ttdeci">const char CM_DEFLATE</div><div class="ttdef"><b>Definition:</b> BamConstants.h:130</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a7fa8715e1c64c9afaaa76c6ad7275287"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a7fa8715e1c64c9afaaa76c6ad7275287">BamTools::Constants::BAM_CIGAR_MISMATCH_CHAR</a></div><div class="ttdeci">const char BAM_CIGAR_MISMATCH_CHAR</div><div class="ttdef"><b>Definition:</b> BamConstants.h:67</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a2d48281859778c215ac640b775958771"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a2d48281859778c215ac640b775958771">BamTools::Constants::BAM_CIGAR_SEQMATCH</a></div><div class="ttdeci">const uint8_t BAM_CIGAR_SEQMATCH</div><div class="ttdef"><b>Definition:</b> BamConstants.h:56</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a1f432cf41f5c315f8da46f302ab9cdc4"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a1f432cf41f5c315f8da46f302ab9cdc4">BamTools::Constants::BAM_TAG_TYPE_HEX</a></div><div class="ttdeci">const char BAM_TAG_TYPE_HEX</div><div class="ttdef"><b>Definition:</b> BamConstants.h:82</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a3ba73be6eb4d6f4b0b15d4496c069bdb"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a3ba73be6eb4d6f4b0b15d4496c069bdb">BamTools::Constants::BAM_CIGAR_SEQMATCH_CHAR</a></div><div class="ttdeci">const char BAM_CIGAR_SEQMATCH_CHAR</div><div class="ttdef"><b>Definition:</b> BamConstants.h:66</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a25602acbbce34e865d67d75b9966a4fc"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a25602acbbce34e865d67d75b9966a4fc">BamTools::Constants::BAM_TAG_TYPE_ASCII</a></div><div class="ttdeci">const char BAM_TAG_TYPE_ASCII</div><div class="ttdef"><b>Definition:</b> BamConstants.h:73</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a203c88971271d392d7a1827bf9ac539c"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a203c88971271d392d7a1827bf9ac539c">BamTools::Constants::BGZF_DEFAULT_BLOCK_SIZE</a></div><div class="ttdeci">const uint32_t BGZF_DEFAULT_BLOCK_SIZE</div><div class="ttdef"><b>Definition:</b> BamConstants.h:143</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a93fe5fe12388a82e8fb9a13acda975b6"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a93fe5fe12388a82e8fb9a13acda975b6">BamTools::Constants::BGZF_ID1</a></div><div class="ttdeci">const char BGZF_ID1</div><div class="ttdef"><b>Definition:</b> BamConstants.h:134</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_ae3415505557271c7b3482c37b6fe7095"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#ae3415505557271c7b3482c37b6fe7095">BamTools::Constants::BAM_BASECODE_G</a></div><div class="ttdeci">const uint8_t BAM_BASECODE_G</div><div class="ttdef"><b>Definition:</b> BamConstants.h:95</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a61c28e76e68e67316e96e5f11c23b2c1"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a61c28e76e68e67316e96e5f11c23b2c1">BamTools::Constants::BAM_BASECODE_V</a></div><div class="ttdeci">const uint8_t BAM_BASECODE_V</div><div class="ttdef"><b>Definition:</b> BamConstants.h:98</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a4adb27270a66ea6874aaa4f27623c0ce"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a4adb27270a66ea6874aaa4f27623c0ce">BamTools::Constants::BAM_BASECODE_B</a></div><div class="ttdeci">const uint8_t BAM_BASECODE_B</div><div class="ttdef"><b>Definition:</b> BamConstants.h:105</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a70b443f3505285dfb1fea8eb6f30152e"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a70b443f3505285dfb1fea8eb6f30152e">BamTools::Constants::FLG_FEXTRA</a></div><div class="ttdeci">const char FLG_FEXTRA</div><div class="ttdef"><b>Definition:</b> BamConstants.h:131</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a49b43dd10eb1fb2797f6dc9563c72684"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a49b43dd10eb1fb2797f6dc9563c72684">BamTools::Constants::BAM_CIGAR_MATCH_CHAR</a></div><div class="ttdeci">const char BAM_CIGAR_MATCH_CHAR</div><div class="ttdef"><b>Definition:</b> BamConstants.h:59</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_aa46eb732dfd824a85df2131cd0af0c51"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#aa46eb732dfd824a85df2131cd0af0c51">BamTools::Constants::BAM_ALIGNMENT_READ_2</a></div><div class="ttdeci">const int BAM_ALIGNMENT_READ_2</div><div class="ttdef"><b>Definition:</b> BamConstants.h:42</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_ab80397a7feb8e03487a7bde45408eea0"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#ab80397a7feb8e03487a7bde45408eea0">BamTools::Constants::BAM_ALIGNMENT_MATE_REVERSE_STRAND</a></div><div class="ttdeci">const int BAM_ALIGNMENT_MATE_REVERSE_STRAND</div><div class="ttdef"><b>Definition:</b> BamConstants.h:40</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_ae1abd2b2a5af02ff5e2947006a314baa"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#ae1abd2b2a5af02ff5e2947006a314baa">BamTools::Constants::BAM_CIGAR_REFSKIP_CHAR</a></div><div class="ttdeci">const char BAM_CIGAR_REFSKIP_CHAR</div><div class="ttdef"><b>Definition:</b> BamConstants.h:62</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_aa51e6bf07e0ec1f00072477492d31a57"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#aa51e6bf07e0ec1f00072477492d31a57">BamTools::Constants::BAM_TAG_TYPE_INT16</a></div><div class="ttdeci">const char BAM_TAG_TYPE_INT16</div><div class="ttdef"><b>Definition:</b> BamConstants.h:76</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_ae670ade3f5071f0744471c7adcb74ba9"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#ae670ade3f5071f0744471c7adcb74ba9">BamTools::Constants::BAM_DNA_EQUAL</a></div><div class="ttdeci">const char BAM_DNA_EQUAL</div><div class="ttdef"><b>Definition:</b> BamConstants.h:108</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a38de013d628dfdc78ce5c3ebb7cd01ba"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a38de013d628dfdc78ce5c3ebb7cd01ba">BamTools::Constants::BAM_DNA_G</a></div><div class="ttdeci">const char BAM_DNA_G</div><div class="ttdef"><b>Definition:</b> BamConstants.h:112</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a447858f9f04354ecb4fc44f459b2e454"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a447858f9f04354ecb4fc44f459b2e454">BamTools::Constants::BGZF_LEN</a></div><div class="ttdeci">const char BGZF_LEN</div><div class="ttdef"><b>Definition:</b> BamConstants.h:136</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_adee5ad65de905fc005c1e60cad193d97"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#adee5ad65de905fc005c1e60cad193d97">BamTools::Constants::BAM_DNA_W</a></div><div class="ttdeci">const char BAM_DNA_W</div><div class="ttdef"><b>Definition:</b> BamConstants.h:117</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_af2f43258da96e8f108ef9840af01b28c"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#af2f43258da96e8f108ef9840af01b28c">BamTools::Constants::GZIP_ID2</a></div><div class="ttdeci">const char GZIP_ID2</div><div class="ttdef"><b>Definition:</b> BamConstants.h:129</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a7f2d8fb36a83c9f0b14ec88100f69d62"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a7f2d8fb36a83c9f0b14ec88100f69d62">BamTools::Constants::BAM_TAG_TYPE_STRING</a></div><div class="ttdeci">const char BAM_TAG_TYPE_STRING</div><div class="ttdef"><b>Definition:</b> BamConstants.h:81</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a29542377dc9e447eb458eb115b4cf2a2"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a29542377dc9e447eb458eb115b4cf2a2">BamTools::Constants::BAM_DNA_V</a></div><div class="ttdeci">const char BAM_DNA_V</div><div class="ttdef"><b>Definition:</b> BamConstants.h:115</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a2d143a0515309004325acf6de92d677d"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a2d143a0515309004325acf6de92d677d">BamTools::Constants::BAM_CIGAR_REFSKIP</a></div><div class="ttdeci">const uint8_t BAM_CIGAR_REFSKIP</div><div class="ttdef"><b>Definition:</b> BamConstants.h:52</div></div>
<div class="ttc" id="namespace_bam_tools_html"><div class="ttname"><a href="namespace_bam_tools.html">BamTools</a></div><div class="ttdoc">Contains all BamTools classes & methods. </div><div class="ttdef"><b>Definition:</b> Sort.h:24</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a9453e08466bafe404192c37740d8b774"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a9453e08466bafe404192c37740d8b774">BamTools::Constants::BAM_DNA_C</a></div><div class="ttdeci">const char BAM_DNA_C</div><div class="ttdef"><b>Definition:</b> BamConstants.h:110</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a4334def5a15ac8f47d44d5e1a736a2bd"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a4334def5a15ac8f47d44d5e1a736a2bd">BamTools::Constants::BAM_BASECODE_C</a></div><div class="ttdeci">const uint8_t BAM_BASECODE_C</div><div class="ttdef"><b>Definition:</b> BamConstants.h:93</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a4d1b3e2b26a9d163336a4a83c62b86b7"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a4d1b3e2b26a9d163336a4a83c62b86b7">BamTools::Constants::BAM_TAG_TAGSIZE</a></div><div class="ttdeci">const uint8_t BAM_TAG_TAGSIZE</div><div class="ttdef"><b>Definition:</b> BamConstants.h:85</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a862e9d172c9874c27977a8cd33550e75"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a862e9d172c9874c27977a8cd33550e75">BamTools::Constants::BGZF_MAX_BLOCK_SIZE</a></div><div class="ttdeci">const uint32_t BGZF_MAX_BLOCK_SIZE</div><div class="ttdef"><b>Definition:</b> BamConstants.h:142</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a0c4f77ed450936979e858e0703324dab"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a0c4f77ed450936979e858e0703324dab">BamTools::Constants::BAM_TAG_TYPE_UINT8</a></div><div class="ttdeci">const char BAM_TAG_TYPE_UINT8</div><div class="ttdef"><b>Definition:</b> BamConstants.h:75</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_ab67f12cc6a7c8d5ad0d276d7ab73ed32"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#ab67f12cc6a7c8d5ad0d276d7ab73ed32">BamTools::Constants::BAM_CIGAR_DEL_CHAR</a></div><div class="ttdeci">const char BAM_CIGAR_DEL_CHAR</div><div class="ttdef"><b>Definition:</b> BamConstants.h:61</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a3952ee2392a20ff0fecc0e23e6dbd824"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a3952ee2392a20ff0fecc0e23e6dbd824">BamTools::Constants::BAM_DNA_B</a></div><div class="ttdeci">const char BAM_DNA_B</div><div class="ttdef"><b>Definition:</b> BamConstants.h:122</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a151bb15603efbe324e95fc2a92629c15"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a151bb15603efbe324e95fc2a92629c15">BamTools::Constants::BAM_DNA_N</a></div><div class="ttdeci">const char BAM_DNA_N</div><div class="ttdef"><b>Definition:</b> BamConstants.h:123</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a657c724f6561af0520aa6c2f4c23f740"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a657c724f6561af0520aa6c2f4c23f740">BamTools::Constants::BAM_TAG_TYPE_UINT32</a></div><div class="ttdeci">const char BAM_TAG_TYPE_UINT32</div><div class="ttdef"><b>Definition:</b> BamConstants.h:79</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_ae0b04e3c24a621fa9c8aca9593640087"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#ae0b04e3c24a621fa9c8aca9593640087">BamTools::Constants::OS_UNKNOWN</a></div><div class="ttdeci">const char OS_UNKNOWN</div><div class="ttdef"><b>Definition:</b> BamConstants.h:132</div></div>
<div class="ttc" id="api__global_8h_html"><div class="ttname"><a href="api__global_8h.html">api_global.h</a></div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_ac91f463b6a3b6df41b537cd4683b6bd4"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#ac91f463b6a3b6df41b537cd4683b6bd4">BamTools::Constants::BAM_BASECODE_A</a></div><div class="ttdeci">const uint8_t BAM_BASECODE_A</div><div class="ttdef"><b>Definition:</b> BamConstants.h:92</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a3f48cc7d5bc98ba489b5f93655006c83"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a3f48cc7d5bc98ba489b5f93655006c83">BamTools::Constants::BAM_ALIGNMENT_PAIRED</a></div><div class="ttdeci">const int BAM_ALIGNMENT_PAIRED</div><div class="ttdef"><b>Definition:</b> BamConstants.h:35</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_acf91d3f746dd27a9582730dde5065d1f"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#acf91d3f746dd27a9582730dde5065d1f">BamTools::Constants::BAM_ALIGNMENT_PROPER_PAIR</a></div><div class="ttdeci">const int BAM_ALIGNMENT_PROPER_PAIR</div><div class="ttdef"><b>Definition:</b> BamConstants.h:36</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a5a57c248035362eba166d501c5792dc3"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a5a57c248035362eba166d501c5792dc3">BamTools::Constants::BAM_DNA_K</a></div><div class="ttdeci">const char BAM_DNA_K</div><div class="ttdef"><b>Definition:</b> BamConstants.h:120</div></div>
<div class="ttc" id="namespace_bam_tools_1_1_constants_html_a4d420915043283204725c9014e02ba73"><div class="ttname"><a href="namespace_bam_tools_1_1_constants.html#a4d420915043283204725c9014e02ba73">BamTools::Constants::BAM_HEADER_MAGIC</a></div><div class="ttdeci">const char *const BAM_HEADER_MAGIC</div><div class="ttdef"><b>Definition:</b> BamConstants.h:27</div></div>
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