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<li class="navelem"><a class="el" href="namespace_bam_tools.html">BamTools</a></li><li class="navelem"><a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html">SamReadGroupDictionary</a></li> </ul>
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<a href="#pub-methods">Public Member Functions</a> |
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<p>Container of <a class="el" href="struct_bam_tools_1_1_sam_read_group.html" title="Represents a SAM read group entry. ">SamReadGroup</a> entries.
<a href="class_bam_tools_1_1_sam_read_group_dictionary.html#details">More...</a></p>
<p><code>#include <<a class="el" href="_sam_read_group_dictionary_8h_source.html">SamReadGroupDictionary.h</a>></code></p>
<table class="memberdecls">
<tr class="heading"><td colspan="2"><h2 class="groupheader"><a name="pub-methods"></a>
Public Member Functions</h2></td></tr>
<tr class="memitem:a29eda318f5ecbf85653b13047a6690b9"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#a29eda318f5ecbf85653b13047a6690b9">SamReadGroupDictionary</a> (void)</td></tr>
<tr class="memdesc:a29eda318f5ecbf85653b13047a6690b9"><td class="mdescLeft"> </td><td class="mdescRight">constructor <a href="#a29eda318f5ecbf85653b13047a6690b9">More...</a><br /></td></tr>
<tr class="separator:a29eda318f5ecbf85653b13047a6690b9"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:af1f5551b32ce98ab89d692b3f7ec1808"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#af1f5551b32ce98ab89d692b3f7ec1808">SamReadGroupDictionary</a> (const <a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html">SamReadGroupDictionary</a> &other)</td></tr>
<tr class="memdesc:af1f5551b32ce98ab89d692b3f7ec1808"><td class="mdescLeft"> </td><td class="mdescRight">copy constructor <a href="#af1f5551b32ce98ab89d692b3f7ec1808">More...</a><br /></td></tr>
<tr class="separator:af1f5551b32ce98ab89d692b3f7ec1808"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aaf7492fb7ddbaef8111d8949d129c12a"><td class="memItemLeft" align="right" valign="top"> </td><td class="memItemRight" valign="bottom"><a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#aaf7492fb7ddbaef8111d8949d129c12a">~SamReadGroupDictionary</a> (void)</td></tr>
<tr class="memdesc:aaf7492fb7ddbaef8111d8949d129c12a"><td class="mdescLeft"> </td><td class="mdescRight">destructor <a href="#aaf7492fb7ddbaef8111d8949d129c12a">More...</a><br /></td></tr>
<tr class="separator:aaf7492fb7ddbaef8111d8949d129c12a"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aff2519ef4e2e43b42ca228946a71ab97"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#aff2519ef4e2e43b42ca228946a71ab97">Add</a> (const <a class="el" href="struct_bam_tools_1_1_sam_read_group.html">SamReadGroup</a> &readGroup)</td></tr>
<tr class="memdesc:aff2519ef4e2e43b42ca228946a71ab97"><td class="mdescLeft"> </td><td class="mdescRight">Appends a read group to the dictionary. <a href="#aff2519ef4e2e43b42ca228946a71ab97">More...</a><br /></td></tr>
<tr class="separator:aff2519ef4e2e43b42ca228946a71ab97"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a45530ebe8d372f580f422079aab92d4f"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#a45530ebe8d372f580f422079aab92d4f">Add</a> (const std::string &readGroupId)</td></tr>
<tr class="memdesc:a45530ebe8d372f580f422079aab92d4f"><td class="mdescLeft"> </td><td class="mdescRight">Appends a read group to the dictionary. <a href="#a45530ebe8d372f580f422079aab92d4f">More...</a><br /></td></tr>
<tr class="separator:a45530ebe8d372f580f422079aab92d4f"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ae7f449c0365d999001e905f709c8a766"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#ae7f449c0365d999001e905f709c8a766">Add</a> (const <a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html">SamReadGroupDictionary</a> &readGroups)</td></tr>
<tr class="memdesc:ae7f449c0365d999001e905f709c8a766"><td class="mdescLeft"> </td><td class="mdescRight">Appends another read group dictionary to this one. <a href="#ae7f449c0365d999001e905f709c8a766">More...</a><br /></td></tr>
<tr class="separator:ae7f449c0365d999001e905f709c8a766"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:abc6329d488d5b850673ce5dc38b7b681"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#abc6329d488d5b850673ce5dc38b7b681">Add</a> (const std::vector< <a class="el" href="struct_bam_tools_1_1_sam_read_group.html">SamReadGroup</a> > &readGroups)</td></tr>
<tr class="memdesc:abc6329d488d5b850673ce5dc38b7b681"><td class="mdescLeft"> </td><td class="mdescRight">Appends multiple read groups to the dictionary. <a href="#abc6329d488d5b850673ce5dc38b7b681">More...</a><br /></td></tr>
<tr class="separator:abc6329d488d5b850673ce5dc38b7b681"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ad262cd4ac61c060bcf70ae20b1f87a9d"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#ad262cd4ac61c060bcf70ae20b1f87a9d">Add</a> (const std::vector< std::string > &readGroupIds)</td></tr>
<tr class="memdesc:ad262cd4ac61c060bcf70ae20b1f87a9d"><td class="mdescLeft"> </td><td class="mdescRight">Appends multiple read groups to the dictionary. <a href="#ad262cd4ac61c060bcf70ae20b1f87a9d">More...</a><br /></td></tr>
<tr class="separator:ad262cd4ac61c060bcf70ae20b1f87a9d"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:afafb0bdd7bcd20050c103a5b80e009d4"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#afafb0bdd7bcd20050c103a5b80e009d4">Clear</a> (void)</td></tr>
<tr class="memdesc:afafb0bdd7bcd20050c103a5b80e009d4"><td class="mdescLeft"> </td><td class="mdescRight">Clears all read group entries. <a href="#afafb0bdd7bcd20050c103a5b80e009d4">More...</a><br /></td></tr>
<tr class="separator:afafb0bdd7bcd20050c103a5b80e009d4"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a7466d351122e16fc9eaa263cf24c5cc4"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#a7466d351122e16fc9eaa263cf24c5cc4">Contains</a> (const <a class="el" href="struct_bam_tools_1_1_sam_read_group.html">SamReadGroup</a> &readGroup) const</td></tr>
<tr class="memdesc:a7466d351122e16fc9eaa263cf24c5cc4"><td class="mdescLeft"> </td><td class="mdescRight">Returns true if dictionary contains read group (matching on ID). <a href="#a7466d351122e16fc9eaa263cf24c5cc4">More...</a><br /></td></tr>
<tr class="separator:a7466d351122e16fc9eaa263cf24c5cc4"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a00f2c1867371c803daa512b53209f355"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#a00f2c1867371c803daa512b53209f355">Contains</a> (const std::string &readGroupId) const</td></tr>
<tr class="memdesc:a00f2c1867371c803daa512b53209f355"><td class="mdescLeft"> </td><td class="mdescRight">Returns true if dictionary contains read group. <a href="#a00f2c1867371c803daa512b53209f355">More...</a><br /></td></tr>
<tr class="separator:a00f2c1867371c803daa512b53209f355"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a36ccc0deef50198dee5a04cc71ce02e7"><td class="memItemLeft" align="right" valign="top">bool </td><td class="memItemRight" valign="bottom"><a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#a36ccc0deef50198dee5a04cc71ce02e7">IsEmpty</a> (void) const</td></tr>
<tr class="memdesc:a36ccc0deef50198dee5a04cc71ce02e7"><td class="mdescLeft"> </td><td class="mdescRight">Returns <code>true</code> if dictionary contains no read groups. <a href="#a36ccc0deef50198dee5a04cc71ce02e7">More...</a><br /></td></tr>
<tr class="separator:a36ccc0deef50198dee5a04cc71ce02e7"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:ab268524f66ee80d0272d29464e6319aa"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#ab268524f66ee80d0272d29464e6319aa">Remove</a> (const <a class="el" href="struct_bam_tools_1_1_sam_read_group.html">SamReadGroup</a> &readGroup)</td></tr>
<tr class="memdesc:ab268524f66ee80d0272d29464e6319aa"><td class="mdescLeft"> </td><td class="mdescRight">Removes read group from dictionary, if found (matching on ID). <a href="#ab268524f66ee80d0272d29464e6319aa">More...</a><br /></td></tr>
<tr class="separator:ab268524f66ee80d0272d29464e6319aa"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a211a32fc74acb48f390781df7d701bf6"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#a211a32fc74acb48f390781df7d701bf6">Remove</a> (const std::string &readGroupId)</td></tr>
<tr class="memdesc:a211a32fc74acb48f390781df7d701bf6"><td class="mdescLeft"> </td><td class="mdescRight">Removes read group from dictionary, if found. <a href="#a211a32fc74acb48f390781df7d701bf6">More...</a><br /></td></tr>
<tr class="separator:a211a32fc74acb48f390781df7d701bf6"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a9b33b2cd39bbf7ae0151fa1a9de09d9b"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#a9b33b2cd39bbf7ae0151fa1a9de09d9b">Remove</a> (const std::vector< <a class="el" href="struct_bam_tools_1_1_sam_read_group.html">SamReadGroup</a> > &readGroups)</td></tr>
<tr class="memdesc:a9b33b2cd39bbf7ae0151fa1a9de09d9b"><td class="mdescLeft"> </td><td class="mdescRight">Removes multiple read groups from dictionary (matching on ID). <a href="#a9b33b2cd39bbf7ae0151fa1a9de09d9b">More...</a><br /></td></tr>
<tr class="separator:a9b33b2cd39bbf7ae0151fa1a9de09d9b"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:abe65c379d663dd702023377925a97d0c"><td class="memItemLeft" align="right" valign="top">void </td><td class="memItemRight" valign="bottom"><a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#abe65c379d663dd702023377925a97d0c">Remove</a> (const std::vector< std::string > &readGroupIds)</td></tr>
<tr class="memdesc:abe65c379d663dd702023377925a97d0c"><td class="mdescLeft"> </td><td class="mdescRight">Removes multiple read groups from dictionary. <a href="#abe65c379d663dd702023377925a97d0c">More...</a><br /></td></tr>
<tr class="separator:abe65c379d663dd702023377925a97d0c"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a194ae1f0ef3313d9a824e15ef4c74907"><td class="memItemLeft" align="right" valign="top">int </td><td class="memItemRight" valign="bottom"><a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#a194ae1f0ef3313d9a824e15ef4c74907">Size</a> (void) const</td></tr>
<tr class="memdesc:a194ae1f0ef3313d9a824e15ef4c74907"><td class="mdescLeft"> </td><td class="mdescRight">Returns number of read groups in dictionary. <a href="#a194ae1f0ef3313d9a824e15ef4c74907">More...</a><br /></td></tr>
<tr class="separator:a194ae1f0ef3313d9a824e15ef4c74907"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a047ec69b52588094ac2c6c1eae9adf40"><td class="memItemLeft" align="right" valign="top"><a class="el" href="struct_bam_tools_1_1_sam_read_group.html">SamReadGroup</a> & </td><td class="memItemRight" valign="bottom"><a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#a047ec69b52588094ac2c6c1eae9adf40">operator[]</a> (const std::string &readGroupId)</td></tr>
<tr class="memdesc:a047ec69b52588094ac2c6c1eae9adf40"><td class="mdescLeft"> </td><td class="mdescRight">Retrieves the modifiable <a class="el" href="struct_bam_tools_1_1_sam_read_group.html" title="Represents a SAM read group entry. ">SamReadGroup</a> that matches <em>readGroupId</em>. <a href="#a047ec69b52588094ac2c6c1eae9adf40">More...</a><br /></td></tr>
<tr class="separator:a047ec69b52588094ac2c6c1eae9adf40"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a20ed952ccb94ec23d809355328beca99"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespace_bam_tools.html#aa01a6a0367d3a90968ae9065ecf5bb2a">SamReadGroupIterator</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#a20ed952ccb94ec23d809355328beca99">Begin</a> (void)</td></tr>
<tr class="separator:a20ed952ccb94ec23d809355328beca99"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a5df87b84838bfa919888995d6b9d1329"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespace_bam_tools.html#a13213686975a6efa187f21595507724e">SamReadGroupConstIterator</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#a5df87b84838bfa919888995d6b9d1329">Begin</a> (void) const</td></tr>
<tr class="separator:a5df87b84838bfa919888995d6b9d1329"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:aaf28504a271f1b63d0295463c2d5e658"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespace_bam_tools.html#a13213686975a6efa187f21595507724e">SamReadGroupConstIterator</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#aaf28504a271f1b63d0295463c2d5e658">ConstBegin</a> (void) const</td></tr>
<tr class="separator:aaf28504a271f1b63d0295463c2d5e658"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a7f4d1c337db23976c93fd5afb6cba4f0"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespace_bam_tools.html#aa01a6a0367d3a90968ae9065ecf5bb2a">SamReadGroupIterator</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#a7f4d1c337db23976c93fd5afb6cba4f0">End</a> (void)</td></tr>
<tr class="separator:a7f4d1c337db23976c93fd5afb6cba4f0"><td class="memSeparator" colspan="2"> </td></tr>
<tr class="memitem:a636360b97701ebfcc438c18cfad4b1b4"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespace_bam_tools.html#a13213686975a6efa187f21595507724e">SamReadGroupConstIterator</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#a636360b97701ebfcc438c18cfad4b1b4">End</a> (void) const</td></tr>
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<tr class="memitem:ac39dee9522fb6ecd6a8dbc6c1f5134cd"><td class="memItemLeft" align="right" valign="top"><a class="el" href="namespace_bam_tools.html#a13213686975a6efa187f21595507724e">SamReadGroupConstIterator</a> </td><td class="memItemRight" valign="bottom"><a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#ac39dee9522fb6ecd6a8dbc6c1f5134cd">ConstEnd</a> (void) const</td></tr>
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<a name="details" id="details"></a><h2 class="groupheader">Detailed Description</h2>
<div class="textblock"><p>Container of <a class="el" href="struct_bam_tools_1_1_sam_read_group.html" title="Represents a SAM read group entry. ">SamReadGroup</a> entries. </p>
<p>Provides methods for operating on a collection of <a class="el" href="struct_bam_tools_1_1_sam_read_group.html" title="Represents a SAM read group entry. ">SamReadGroup</a> entries. </p>
</div><h2 class="groupheader">Constructor & Destructor Documentation</h2>
<a id="a29eda318f5ecbf85653b13047a6690b9"></a>
<h2 class="memtitle"><span class="permalink"><a href="#a29eda318f5ecbf85653b13047a6690b9">◆ </a></span>SamReadGroupDictionary() <span class="overload">[1/2]</span></h2>
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<td class="memname">SamReadGroupDictionary::SamReadGroupDictionary </td>
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<td class="paramtype">void </td>
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<p>constructor </p>
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<h2 class="memtitle"><span class="permalink"><a href="#af1f5551b32ce98ab89d692b3f7ec1808">◆ </a></span>SamReadGroupDictionary() <span class="overload">[2/2]</span></h2>
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<td class="memname">SamReadGroupDictionary::SamReadGroupDictionary </td>
<td>(</td>
<td class="paramtype">const <a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html">SamReadGroupDictionary</a> & </td>
<td class="paramname"><em>other</em></td><td>)</td>
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<p>copy constructor </p>
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<h2 class="memtitle"><span class="permalink"><a href="#aaf7492fb7ddbaef8111d8949d129c12a">◆ </a></span>~SamReadGroupDictionary()</h2>
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<td class="memname">SamReadGroupDictionary::~SamReadGroupDictionary </td>
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<td class="paramtype">void </td>
<td class="paramname"></td><td>)</td>
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<p>destructor </p>
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<h2 class="groupheader">Member Function Documentation</h2>
<a id="aff2519ef4e2e43b42ca228946a71ab97"></a>
<h2 class="memtitle"><span class="permalink"><a href="#aff2519ef4e2e43b42ca228946a71ab97">◆ </a></span>Add() <span class="overload">[1/5]</span></h2>
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<td class="memname">void SamReadGroupDictionary::Add </td>
<td>(</td>
<td class="paramtype">const <a class="el" href="struct_bam_tools_1_1_sam_read_group.html">SamReadGroup</a> & </td>
<td class="paramname"><em>readGroup</em></td><td>)</td>
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<p>Appends a read group to the dictionary. </p>
<p>Duplicate entries are silently discarded.</p>
<dl class="params"><dt>Parameters</dt><dd>
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<tr><td class="paramdir">[in]</td><td class="paramname">readGroup</td><td>entry to be added </td></tr>
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<h2 class="memtitle"><span class="permalink"><a href="#a45530ebe8d372f580f422079aab92d4f">◆ </a></span>Add() <span class="overload">[2/5]</span></h2>
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<td class="memname">void SamReadGroupDictionary::Add </td>
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<td class="paramname"><em>readGroupId</em></td><td>)</td>
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<p>Appends a read group to the dictionary. </p>
<p>This is an overloaded function.</p>
<dl class="params"><dt>Parameters</dt><dd>
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<tr><td class="paramdir">[in]</td><td class="paramname">readGroupId</td><td>ID of read group to be added </td></tr>
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<dl class="section see"><dt>See also</dt><dd><a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#aff2519ef4e2e43b42ca228946a71ab97" title="Appends a read group to the dictionary. ">Add()</a> </dd></dl>
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<td class="memname">void SamReadGroupDictionary::Add </td>
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<td class="paramtype">const <a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html">SamReadGroupDictionary</a> & </td>
<td class="paramname"><em>readGroups</em></td><td>)</td>
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<p>Appends another read group dictionary to this one. </p>
<p>This is an overloaded function.</p>
<dl class="params"><dt>Parameters</dt><dd>
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<tr><td class="paramdir">[in]</td><td class="paramname">readGroups</td><td>entries to be added </td></tr>
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</dd>
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<dl class="section see"><dt>See also</dt><dd><a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#aff2519ef4e2e43b42ca228946a71ab97" title="Appends a read group to the dictionary. ">Add()</a> </dd></dl>
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<td class="memname">void SamReadGroupDictionary::Add </td>
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<td class="paramtype">const std::vector< <a class="el" href="struct_bam_tools_1_1_sam_read_group.html">SamReadGroup</a> > & </td>
<td class="paramname"><em>readGroups</em></td><td>)</td>
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<p>Appends multiple read groups to the dictionary. </p>
<p>This is an overloaded function.</p>
<dl class="params"><dt>Parameters</dt><dd>
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<tr><td class="paramdir">[in]</td><td class="paramname">readGroups</td><td>entries to be added </td></tr>
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<dl class="section see"><dt>See also</dt><dd><a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#aff2519ef4e2e43b42ca228946a71ab97" title="Appends a read group to the dictionary. ">Add()</a> </dd></dl>
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<td class="memname">void SamReadGroupDictionary::Add </td>
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<td class="paramtype">const std::vector< std::string > & </td>
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<p>Appends multiple read groups to the dictionary. </p>
<p>This is an overloaded function.</p>
<dl class="params"><dt>Parameters</dt><dd>
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<tr><td class="paramdir">[in]</td><td class="paramname">readGroupIds</td><td>IDs of read groups to be added </td></tr>
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</dd>
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<dl class="section see"><dt>See also</dt><dd><a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#aff2519ef4e2e43b42ca228946a71ab97" title="Appends a read group to the dictionary. ">Add()</a> </dd></dl>
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<h2 class="memtitle"><span class="permalink"><a href="#a20ed952ccb94ec23d809355328beca99">◆ </a></span>Begin() <span class="overload">[1/2]</span></h2>
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<td class="memname"><a class="el" href="namespace_bam_tools.html#aa01a6a0367d3a90968ae9065ecf5bb2a">SamReadGroupIterator</a> SamReadGroupDictionary::Begin </td>
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<dl class="section return"><dt>Returns</dt><dd>an STL iterator pointing to the first read group </dd></dl>
<dl class="section see"><dt>See also</dt><dd><a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#aaf28504a271f1b63d0295463c2d5e658">ConstBegin()</a>, <a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#a7f4d1c337db23976c93fd5afb6cba4f0">End()</a> </dd></dl>
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<td class="memname"><a class="el" href="namespace_bam_tools.html#a13213686975a6efa187f21595507724e">SamReadGroupConstIterator</a> SamReadGroupDictionary::Begin </td>
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<dl class="section return"><dt>Returns</dt><dd>an STL const_iterator pointing to the first read group</dd></dl>
<p>This is an overloaded function.</p>
<dl class="section see"><dt>See also</dt><dd><a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#aaf28504a271f1b63d0295463c2d5e658">ConstBegin()</a>, <a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#a7f4d1c337db23976c93fd5afb6cba4f0">End()</a> </dd></dl>
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<h2 class="memtitle"><span class="permalink"><a href="#afafb0bdd7bcd20050c103a5b80e009d4">◆ </a></span>Clear()</h2>
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<td class="memname">void SamReadGroupDictionary::Clear </td>
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<p>Clears all read group entries. </p>
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<h2 class="memtitle"><span class="permalink"><a href="#aaf28504a271f1b63d0295463c2d5e658">◆ </a></span>ConstBegin()</h2>
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<td class="memname"><a class="el" href="namespace_bam_tools.html#a13213686975a6efa187f21595507724e">SamReadGroupConstIterator</a> SamReadGroupDictionary::ConstBegin </td>
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<dl class="section return"><dt>Returns</dt><dd>an STL const_iterator pointing to the first read group </dd></dl>
<dl class="section see"><dt>See also</dt><dd><a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#a20ed952ccb94ec23d809355328beca99">Begin()</a>, <a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#ac39dee9522fb6ecd6a8dbc6c1f5134cd">ConstEnd()</a> </dd></dl>
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<td class="memname"><a class="el" href="namespace_bam_tools.html#a13213686975a6efa187f21595507724e">SamReadGroupConstIterator</a> SamReadGroupDictionary::ConstEnd </td>
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<dl class="section return"><dt>Returns</dt><dd>an STL const_iterator pointing to the imaginary entry after the last read group </dd></dl>
<dl class="section see"><dt>See also</dt><dd><a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#aaf28504a271f1b63d0295463c2d5e658">ConstBegin()</a>, <a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#a7f4d1c337db23976c93fd5afb6cba4f0">End()</a> </dd></dl>
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<h2 class="memtitle"><span class="permalink"><a href="#a7466d351122e16fc9eaa263cf24c5cc4">◆ </a></span>Contains() <span class="overload">[1/2]</span></h2>
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<td class="memname">bool SamReadGroupDictionary::Contains </td>
<td>(</td>
<td class="paramtype">const <a class="el" href="struct_bam_tools_1_1_sam_read_group.html">SamReadGroup</a> & </td>
<td class="paramname"><em>readGroup</em></td><td>)</td>
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<p>Returns true if dictionary contains read group (matching on ID). </p>
<p>This is an overloaded function.</p>
<dl class="params"><dt>Parameters</dt><dd>
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<tr><td class="paramdir">[in]</td><td class="paramname">readGroup</td><td>search for this read group </td></tr>
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<dl class="section return"><dt>Returns</dt><dd><code>true</code> if dictionary contains read group (matching on ID). </dd></dl>
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<h2 class="memtitle"><span class="permalink"><a href="#a00f2c1867371c803daa512b53209f355">◆ </a></span>Contains() <span class="overload">[2/2]</span></h2>
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<td class="memname">bool SamReadGroupDictionary::Contains </td>
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<p>Returns true if dictionary contains read group. </p>
<dl class="params"><dt>Parameters</dt><dd>
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<tr><td class="paramdir">[in]</td><td class="paramname">readGroupId</td><td>search for read group matching this ID </td></tr>
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<dl class="section return"><dt>Returns</dt><dd><code>true</code> if dictionary contains a read group with this ID </dd></dl>
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<h2 class="memtitle"><span class="permalink"><a href="#a7f4d1c337db23976c93fd5afb6cba4f0">◆ </a></span>End() <span class="overload">[1/2]</span></h2>
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<td class="memname"><a class="el" href="namespace_bam_tools.html#aa01a6a0367d3a90968ae9065ecf5bb2a">SamReadGroupIterator</a> SamReadGroupDictionary::End </td>
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<dl class="section return"><dt>Returns</dt><dd>an STL iterator pointing to the imaginary entry after the last read group </dd></dl>
<dl class="section see"><dt>See also</dt><dd><a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#a20ed952ccb94ec23d809355328beca99">Begin()</a>, <a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#ac39dee9522fb6ecd6a8dbc6c1f5134cd">ConstEnd()</a> </dd></dl>
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<dl class="section return"><dt>Returns</dt><dd>an STL const_iterator pointing to the imaginary entry after the last read group</dd></dl>
<p>This is an overloaded function.</p>
<dl class="section see"><dt>See also</dt><dd><a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#a20ed952ccb94ec23d809355328beca99">Begin()</a>, <a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#ac39dee9522fb6ecd6a8dbc6c1f5134cd">ConstEnd()</a> </dd></dl>
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<h2 class="memtitle"><span class="permalink"><a href="#a36ccc0deef50198dee5a04cc71ce02e7">◆ </a></span>IsEmpty()</h2>
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<td class="memname">bool SamReadGroupDictionary::IsEmpty </td>
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<p>Returns <code>true</code> if dictionary contains no read groups. </p>
<dl class="section see"><dt>See also</dt><dd><a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#a194ae1f0ef3313d9a824e15ef4c74907" title="Returns number of read groups in dictionary. ">Size()</a> </dd></dl>
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<h2 class="memtitle"><span class="permalink"><a href="#a047ec69b52588094ac2c6c1eae9adf40">◆ </a></span>operator[]()</h2>
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<td class="memname"><a class="el" href="struct_bam_tools_1_1_sam_read_group.html">SamReadGroup</a> & SamReadGroupDictionary::operator[] </td>
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<p>Retrieves the modifiable <a class="el" href="struct_bam_tools_1_1_sam_read_group.html" title="Represents a SAM read group entry. ">SamReadGroup</a> that matches <em>readGroupId</em>. </p>
<dl class="section note"><dt>Note</dt><dd>If the dictionary contains no read group matching this ID, this function inserts a new one with this ID, and returns a reference to it. If you want to avoid this insertion behavior, check the result of <a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#a7466d351122e16fc9eaa263cf24c5cc4" title="Returns true if dictionary contains read group (matching on ID). ">Contains()</a> before using this operator.</dd></dl>
<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramdir">[in]</td><td class="paramname">readGroupId</td><td>ID of read group to retrieve </td></tr>
</table>
</dd>
</dl>
<dl class="section return"><dt>Returns</dt><dd>a modifiable reference to the <a class="el" href="struct_bam_tools_1_1_sam_read_group.html" title="Represents a SAM read group entry. ">SamReadGroup</a> associated with the ID </dd></dl>
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<a id="ab268524f66ee80d0272d29464e6319aa"></a>
<h2 class="memtitle"><span class="permalink"><a href="#ab268524f66ee80d0272d29464e6319aa">◆ </a></span>Remove() <span class="overload">[1/4]</span></h2>
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<td class="memname">void SamReadGroupDictionary::Remove </td>
<td>(</td>
<td class="paramtype">const <a class="el" href="struct_bam_tools_1_1_sam_read_group.html">SamReadGroup</a> & </td>
<td class="paramname"><em>readGroup</em></td><td>)</td>
<td></td>
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<p>Removes read group from dictionary, if found (matching on ID). </p>
<p>This is an overloaded function.</p>
<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramdir">[in]</td><td class="paramname">readGroup</td><td>read group to remove (matches on ID) </td></tr>
</table>
</dd>
</dl>
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<a id="a211a32fc74acb48f390781df7d701bf6"></a>
<h2 class="memtitle"><span class="permalink"><a href="#a211a32fc74acb48f390781df7d701bf6">◆ </a></span>Remove() <span class="overload">[2/4]</span></h2>
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<td class="memname">void SamReadGroupDictionary::Remove </td>
<td>(</td>
<td class="paramtype">const std::string & </td>
<td class="paramname"><em>readGroupId</em></td><td>)</td>
<td></td>
</tr>
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<p>Removes read group from dictionary, if found. </p>
<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramdir">[in]</td><td class="paramname">readGroupId</td><td>ID of read group to remove </td></tr>
</table>
</dd>
</dl>
<dl class="section see"><dt>See also</dt><dd><a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#ab268524f66ee80d0272d29464e6319aa" title="Removes read group from dictionary, if found (matching on ID). ">Remove()</a> </dd></dl>
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<a id="a9b33b2cd39bbf7ae0151fa1a9de09d9b"></a>
<h2 class="memtitle"><span class="permalink"><a href="#a9b33b2cd39bbf7ae0151fa1a9de09d9b">◆ </a></span>Remove() <span class="overload">[3/4]</span></h2>
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<td class="memname">void SamReadGroupDictionary::Remove </td>
<td>(</td>
<td class="paramtype">const std::vector< <a class="el" href="struct_bam_tools_1_1_sam_read_group.html">SamReadGroup</a> > & </td>
<td class="paramname"><em>readGroups</em></td><td>)</td>
<td></td>
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<p>Removes multiple read groups from dictionary (matching on ID). </p>
<p>This is an overloaded function.</p>
<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramdir">[in]</td><td class="paramname">readGroups</td><td>read groups to remove </td></tr>
</table>
</dd>
</dl>
<dl class="section see"><dt>See also</dt><dd><a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#ab268524f66ee80d0272d29464e6319aa" title="Removes read group from dictionary, if found (matching on ID). ">Remove()</a> </dd></dl>
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<a id="abe65c379d663dd702023377925a97d0c"></a>
<h2 class="memtitle"><span class="permalink"><a href="#abe65c379d663dd702023377925a97d0c">◆ </a></span>Remove() <span class="overload">[4/4]</span></h2>
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<td class="memname">void SamReadGroupDictionary::Remove </td>
<td>(</td>
<td class="paramtype">const std::vector< std::string > & </td>
<td class="paramname"><em>readGroupIds</em></td><td>)</td>
<td></td>
</tr>
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</div><div class="memdoc">
<p>Removes multiple read groups from dictionary. </p>
<p>This is an overloaded function.</p>
<dl class="params"><dt>Parameters</dt><dd>
<table class="params">
<tr><td class="paramdir">[in]</td><td class="paramname">readGroupIds</td><td>IDs of the read groups to remove </td></tr>
</table>
</dd>
</dl>
<dl class="section see"><dt>See also</dt><dd><a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#ab268524f66ee80d0272d29464e6319aa" title="Removes read group from dictionary, if found (matching on ID). ">Remove()</a> </dd></dl>
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<a id="a194ae1f0ef3313d9a824e15ef4c74907"></a>
<h2 class="memtitle"><span class="permalink"><a href="#a194ae1f0ef3313d9a824e15ef4c74907">◆ </a></span>Size()</h2>
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<td class="memname">int SamReadGroupDictionary::Size </td>
<td>(</td>
<td class="paramtype">void </td>
<td class="paramname"></td><td>)</td>
<td> const</td>
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<p>Returns number of read groups in dictionary. </p>
<dl class="section see"><dt>See also</dt><dd><a class="el" href="class_bam_tools_1_1_sam_read_group_dictionary.html#a36ccc0deef50198dee5a04cc71ce02e7" title="Returns true if dictionary contains no read groups. ">IsEmpty()</a> </dd></dl>
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</div>
<hr/>The documentation for this class was generated from the following files:<ul>
<li><a class="el" href="_sam_read_group_dictionary_8h_source.html">SamReadGroupDictionary.h</a></li>
<li><a class="el" href="_sam_read_group_dictionary_8cpp.html">SamReadGroupDictionary.cpp</a></li>
</ul>
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