librostlab-blast-doc 1.0.1-7 / usr / share / doc / librostlab-blast-doc / html / blast-parser-driver_8h_source.html

This file is indexed.

/usr/share/doc/librostlab-blast-doc/html/blast-parser-driver_8h_source.html is in librostlab-blast-doc 1.0.1-7.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below. 

  1
  2
  3
  4
  5
  6
  7
  8
  9
 10
 11
 12
 13
 14
 15
 16
 17
 18
 19
 20
 21
 22
 23
 24
 25
 26
 27
 28
 29
 30
 31
 32
 33
 34
 35
 36
 37
 38
 39
 40
 41
 42
 43
 44
 45
 46
 47
 48
 49
 50
 51
 52
 53
 54
 55
 56
 57
 58
 59
 60
 61
 62
 63
 64
 65
 66
 67
 68
 69
 70
 71
 72
 73
 74
 75
 76
 77
 78
 79
 80
 81
 82
 83
 84
 85
 86
 87
 88
 89
 90
 91
 92
 93
 94
 95
 96
 97
 98
 99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<meta http-equiv="Content-Type" content="text/xhtml;charset=UTF-8"/>
<meta http-equiv="X-UA-Compatible" content="IE=9"/>
<meta name="generator" content="Doxygen 1.8.11"/>
<title>librostlab-blast: rostlab/blast-parser-driver.h Source File</title>
<link href="tabs.css" rel="stylesheet" type="text/css"/>
<script type="text/javascript" src="jquery.js"></script>
<script type="text/javascript" src="dynsections.js"></script>
<link href="search/search.css" rel="stylesheet" type="text/css"/>
<script type="text/javascript" src="search/searchdata.js"></script>
<script type="text/javascript" src="search/search.js"></script>
<script type="text/javascript">
  $(document).ready(function() { init_search(); });
</script>
<link href="doxygen.css" rel="stylesheet" type="text/css" />
</head>
<body>
<div id="top"><!-- do not remove this div, it is closed by doxygen! -->
<div id="titlearea">
<table cellspacing="0" cellpadding="0">
 <tbody>
 <tr style="height: 56px;">
  <td id="projectalign" style="padding-left: 0.5em;">
   <div id="projectname">librostlab-blast
   &#160;<span id="projectnumber">1.0.1</span>
   </div>
  </td>
 </tr>
 </tbody>
</table>
</div>
<!-- end header part -->
<!-- Generated by Doxygen 1.8.11 -->
<script type="text/javascript">
var searchBox = new SearchBox("searchBox", "search",false,'Search');
</script>
  <div id="navrow1" class="tabs">
    <ul class="tablist">
      <li><a href="index.html"><span>Main&#160;Page</span></a></li>
      <li><a href="namespaces.html"><span>Namespaces</span></a></li>
      <li><a href="annotated.html"><span>Classes</span></a></li>
      <li class="current"><a href="files.html"><span>Files</span></a></li>
      <li>
        <div id="MSearchBox" class="MSearchBoxInactive">
        <span class="left">
          <img id="MSearchSelect" src="search/mag_sel.png"
               onmouseover="return searchBox.OnSearchSelectShow()"
               onmouseout="return searchBox.OnSearchSelectHide()"
               alt=""/>
          <input type="text" id="MSearchField" value="Search" accesskey="S"
               onfocus="searchBox.OnSearchFieldFocus(true)" 
               onblur="searchBox.OnSearchFieldFocus(false)" 
               onkeyup="searchBox.OnSearchFieldChange(event)"/>
          </span><span class="right">
            <a id="MSearchClose" href="javascript:searchBox.CloseResultsWindow()"><img id="MSearchCloseImg" border="0" src="search/close.png" alt=""/></a>
          </span>
        </div>
      </li>
    </ul>
  </div>
  <div id="navrow2" class="tabs2">
    <ul class="tablist">
      <li><a href="files.html"><span>File&#160;List</span></a></li>
      <li><a href="globals.html"><span>File&#160;Members</span></a></li>
    </ul>
  </div>
<!-- window showing the filter options -->
<div id="MSearchSelectWindow"
     onmouseover="return searchBox.OnSearchSelectShow()"
     onmouseout="return searchBox.OnSearchSelectHide()"
     onkeydown="return searchBox.OnSearchSelectKey(event)">
</div>

<!-- iframe showing the search results (closed by default) -->
<div id="MSearchResultsWindow">
<iframe src="javascript:void(0)" frameborder="0" 
        name="MSearchResults" id="MSearchResults">
</iframe>
</div>

<div id="nav-path" class="navpath">
  <ul>
<li class="navelem"><a class="el" href="dir_b7a5fe10b55060f48179abd50ad1f335.html">rostlab</a></li>  </ul>
</div>
</div><!-- top -->
<div class="header">
  <div class="headertitle">
<div class="title">blast-parser-driver.h</div>  </div>
</div><!--header-->
<div class="contents">
<a href="blast-parser-driver_8h.html">Go to the documentation of this file.</a><div class="fragment"><div class="line"><a name="l00001"></a><span class="lineno">    1</span>&#160;<span class="comment">/*</span></div><div class="line"><a name="l00002"></a><span class="lineno">    2</span>&#160;<span class="comment">    Copyright (C) 2011 Laszlo Kajan, Technical University of Munich, Germany</span></div><div class="line"><a name="l00003"></a><span class="lineno">    3</span>&#160;<span class="comment"></span></div><div class="line"><a name="l00004"></a><span class="lineno">    4</span>&#160;<span class="comment">    This file is part of librostlab.</span></div><div class="line"><a name="l00005"></a><span class="lineno">    5</span>&#160;<span class="comment"></span></div><div class="line"><a name="l00006"></a><span class="lineno">    6</span>&#160;<span class="comment">    librostlab is free software: you can redistribute it and/or modify</span></div><div class="line"><a name="l00007"></a><span class="lineno">    7</span>&#160;<span class="comment">    it under the terms of the GNU Lesser General Public License as published by</span></div><div class="line"><a name="l00008"></a><span class="lineno">    8</span>&#160;<span class="comment">    the Free Software Foundation, either version 3 of the License, or</span></div><div class="line"><a name="l00009"></a><span class="lineno">    9</span>&#160;<span class="comment">    (at your option) any later version.</span></div><div class="line"><a name="l00010"></a><span class="lineno">   10</span>&#160;<span class="comment"></span></div><div class="line"><a name="l00011"></a><span class="lineno">   11</span>&#160;<span class="comment">    This program is distributed in the hope that it will be useful,</span></div><div class="line"><a name="l00012"></a><span class="lineno">   12</span>&#160;<span class="comment">    but WITHOUT ANY WARRANTY; without even the implied warranty of</span></div><div class="line"><a name="l00013"></a><span class="lineno">   13</span>&#160;<span class="comment">    MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the</span></div><div class="line"><a name="l00014"></a><span class="lineno">   14</span>&#160;<span class="comment">    GNU Lesser General Public License for more details.</span></div><div class="line"><a name="l00015"></a><span class="lineno">   15</span>&#160;<span class="comment"></span></div><div class="line"><a name="l00016"></a><span class="lineno">   16</span>&#160;<span class="comment">    You should have received a copy of the GNU Lesser General Public License</span></div><div class="line"><a name="l00017"></a><span class="lineno">   17</span>&#160;<span class="comment">    along with this program.  If not, see &lt;http://www.gnu.org/licenses/&gt;.</span></div><div class="line"><a name="l00018"></a><span class="lineno">   18</span>&#160;<span class="comment">*/</span></div><div class="line"><a name="l00019"></a><span class="lineno">   19</span>&#160;<span class="preprocessor">#ifndef ROSTLAB_BLAST_PARSER_DRIVER_H</span></div><div class="line"><a name="l00020"></a><span class="lineno">   20</span>&#160;<span class="preprocessor">#define ROSTLAB_BLAST_PARSER_DRIVER_H 1</span></div><div class="line"><a name="l00021"></a><span class="lineno">   21</span>&#160;</div><div class="line"><a name="l00022"></a><span class="lineno">   22</span>&#160;<span class="preprocessor">#include &lt;stdio.h&gt;</span></div><div class="line"><a name="l00023"></a><span class="lineno">   23</span>&#160;<span class="preprocessor">#include &lt;string&gt;</span></div><div class="line"><a name="l00024"></a><span class="lineno">   24</span>&#160;<span class="preprocessor">#include &lt;map&gt;</span></div><div class="line"><a name="l00025"></a><span class="lineno">   25</span>&#160;<span class="preprocessor">#include &lt;rostlab/rostlab_stdexcept.h&gt;</span></div><div class="line"><a name="l00026"></a><span class="lineno">   26</span>&#160;<span class="preprocessor">#include &quot;<a class="code" href="blast-parser-parser_8h.html">rostlab/blast-parser-parser.h</a>&quot;</span></div><div class="line"><a name="l00027"></a><span class="lineno">   27</span>&#160;<span class="preprocessor">#include &quot;<a class="code" href="blast-result_8h.html">rostlab/blast-result.h</a>&quot;</span></div><div class="line"><a name="l00028"></a><span class="lineno">   28</span>&#160;</div><div class="line"><a name="l00029"></a><span class="lineno">   29</span>&#160;<span class="comment">// Tell Flex the lexer&#39;s prototype ...</span></div><div class="line"><a name="l00030"></a><span class="lineno"><a class="line" href="blast-parser-driver_8h.html#ae5b01ac2fa5a6ad5fb97559638abe686">   30</a></span>&#160;<span class="preprocessor">#define YY_DECL                                             \</span></div><div class="line"><a name="l00031"></a><span class="lineno">   31</span>&#160;<span class="preprocessor">  rostlab::blast::parser::token_type                        \</span></div><div class="line"><a name="l00032"></a><span class="lineno">   32</span>&#160;<span class="preprocessor">  yylex( rostlab::blast::parser::semantic_type* __yylval,   \</span></div><div class="line"><a name="l00033"></a><span class="lineno">   33</span>&#160;<span class="preprocessor">         rostlab::blast::parser::location_type* __yylloc,   \</span></div><div class="line"><a name="l00034"></a><span class="lineno">   34</span>&#160;<span class="preprocessor">         rostlab::blast::parser_driver&amp; __drv,              \</span></div><div class="line"><a name="l00035"></a><span class="lineno">   35</span>&#160;<span class="preprocessor">         void* yyscanner )</span></div><div class="line"><a name="l00036"></a><span class="lineno">   36</span>&#160;<span class="comment">// ... and declare it for the parser&#39;s sake.</span></div><div class="line"><a name="l00037"></a><span class="lineno"><a class="line" href="blast-parser-driver_8h.html#abcefb20c54ce0f92452cfbb9cf657670">   37</a></span>&#160;<a class="code" href="blast-parser-driver_8h.html#ae5b01ac2fa5a6ad5fb97559638abe686">YY_DECL</a>;</div><div class="line"><a name="l00038"></a><span class="lineno"><a class="line" href="blast-parser-driver_8h.html#a42a0bbb9c998707636151907fae15873">   38</a></span>&#160;<span class="preprocessor">#define YY_DECL_FRIEND                                      \</span></div><div class="line"><a name="l00039"></a><span class="lineno">   39</span>&#160;<span class="preprocessor">  rostlab::blast::parser::token_type                        \</span></div><div class="line"><a name="l00040"></a><span class="lineno">   40</span>&#160;<span class="preprocessor">  ::yylex( rostlab::blast::parser::semantic_type* __yylval, \</span></div><div class="line"><a name="l00041"></a><span class="lineno">   41</span>&#160;<span class="preprocessor">         rostlab::blast::parser::location_type* __yylloc,   \</span></div><div class="line"><a name="l00042"></a><span class="lineno">   42</span>&#160;<span class="preprocessor">         rostlab::blast::parser_driver&amp; __drv,              \</span></div><div class="line"><a name="l00043"></a><span class="lineno">   43</span>&#160;<span class="preprocessor">         void* yyscanner )</span></div><div class="line"><a name="l00044"></a><span class="lineno">   44</span>&#160;</div><div class="line"><a name="l00045"></a><span class="lineno"><a class="line" href="namespacerostlab.html">   45</a></span>&#160;<span class="keyword">namespace </span><a class="code" href="namespacerostlab.html">rostlab</a> {</div><div class="line"><a name="l00046"></a><span class="lineno">   46</span>&#160;</div><div class="line"><a name="l00047"></a><span class="lineno"><a class="line" href="namespacerostlab_1_1blast.html">   47</a></span>&#160;<span class="keyword">namespace </span>blast {</div><div class="line"><a name="l00048"></a><span class="lineno">   48</span>&#160;</div><div class="line"><a name="l00049"></a><span class="lineno"><a class="line" href="classrostlab_1_1blast_1_1parser__error.html">   49</a></span>&#160;<span class="keyword">class </span><a class="code" href="classrostlab_1_1blast_1_1parser__error.html">parser_error</a> : <span class="keyword">public</span> rostlab::runtime_error</div><div class="line"><a name="l00050"></a><span class="lineno">   50</span>&#160;{</div><div class="line"><a name="l00051"></a><span class="lineno">   51</span>&#160;  <span class="keyword">public</span>:</div><div class="line"><a name="l00052"></a><span class="lineno"><a class="line" href="classrostlab_1_1blast_1_1parser__error.html#a90f098161f0a51cb592f6def82616d5b">   52</a></span>&#160;                  <a class="code" href="classrostlab_1_1blast_1_1parser__error.html#a90f098161f0a51cb592f6def82616d5b">parser_error</a>( <span class="keyword">const</span> std::string&amp; __msg ) : <a class="code" href="namespacerostlab.html">rostlab</a>::runtime_error(__msg){}</div><div class="line"><a name="l00053"></a><span class="lineno">   53</span>&#160;};</div><div class="line"><a name="l00054"></a><span class="lineno">   54</span>&#160;</div><div class="line"><a name="l00056"></a><span class="lineno">   56</span>&#160;</div><div class="line"><a name="l00059"></a><span class="lineno"><a class="line" href="classrostlab_1_1blast_1_1parser__driver.html">   59</a></span>&#160;<span class="keyword">class </span><a class="code" href="classrostlab_1_1blast_1_1parser__driver.html">parser_driver</a> {</div><div class="line"><a name="l00060"></a><span class="lineno"><a class="line" href="classrostlab_1_1blast_1_1parser__driver.html#af663df14ac06bd07784e5a25fb77bff5">   60</a></span>&#160;    <span class="keyword">friend</span> <span class="keyword">class </span><a class="code" href="classrostlab_1_1blast_1_1parser.html">rostlab::blast::parser</a>;</div><div class="line"><a name="l00061"></a><span class="lineno">   61</span>&#160;    <span class="keyword">friend</span> <a class="code" href="blast-parser-driver_8h.html#a42a0bbb9c998707636151907fae15873">YY_DECL_FRIEND</a>;</div><div class="line"><a name="l00062"></a><span class="lineno">   62</span>&#160;  <span class="keyword">public</span>:</div><div class="line"><a name="l00063"></a><span class="lineno"><a class="line" href="classrostlab_1_1blast_1_1parser__driver.html#aa4a066d4b51108c2aa2896e8fed77951">   63</a></span>&#160;    <span class="keyword">typedef</span>       <a class="code" href="structrostlab_1_1blast_1_1result.html">rostlab::blast::result</a>    <a class="code" href="classrostlab_1_1blast_1_1parser__driver.html#aa4a066d4b51108c2aa2896e8fed77951">result_type</a>;</div><div class="line"><a name="l00064"></a><span class="lineno">   64</span>&#160;  <span class="keyword">private</span>:</div><div class="line"><a name="l00065"></a><span class="lineno">   65</span>&#160;    std::string   _istream_name; <span class="comment">// a name for error reporting</span></div><div class="line"><a name="l00066"></a><span class="lineno">   66</span>&#160;    FILE*         _istream;</div><div class="line"><a name="l00067"></a><span class="lineno">   67</span>&#160;    result_type   _result;</div><div class="line"><a name="l00068"></a><span class="lineno">   68</span>&#160;    <span class="keywordtype">void</span>*         _scanner; <span class="comment">// yyscan_t</span></div><div class="line"><a name="l00069"></a><span class="lineno">   69</span>&#160;  <span class="keyword">private</span>:</div><div class="line"><a name="l00070"></a><span class="lineno">   70</span>&#160;    <span class="comment">// this is a resource - disable copy contructor and copy assignment</span></div><div class="line"><a name="l00071"></a><span class="lineno">   71</span>&#160;                  <a class="code" href="classrostlab_1_1blast_1_1parser__driver.html">parser_driver</a>( <span class="keyword">const</span> <a class="code" href="classrostlab_1_1blast_1_1parser__driver.html">parser_driver</a>&amp; ){};</div><div class="line"><a name="l00072"></a><span class="lineno">   72</span>&#160;    <a class="code" href="classrostlab_1_1blast_1_1parser__driver.html">parser_driver</a>&amp; operator=(<span class="keyword">const</span> <a class="code" href="classrostlab_1_1blast_1_1parser__driver.html">parser_driver</a>&amp;){<span class="keywordflow">return</span> *<span class="keyword">this</span>;};</div><div class="line"><a name="l00073"></a><span class="lineno">   73</span>&#160;</div><div class="line"><a name="l00074"></a><span class="lineno">   74</span>&#160;    std::string   _buffer;</div><div class="line"><a name="l00075"></a><span class="lineno">   75</span>&#160;    <span class="keywordtype">int</span>           _n1, _n2;</div><div class="line"><a name="l00076"></a><span class="lineno">   76</span>&#160;    <span class="keywordtype">void</span>          _scan_init();</div><div class="line"><a name="l00077"></a><span class="lineno">   77</span>&#160;    <span class="keywordtype">void</span>          _scan_destroy();</div><div class="line"><a name="l00078"></a><span class="lineno">   78</span>&#160;  <span class="keyword">public</span>:</div><div class="line"><a name="l00079"></a><span class="lineno"><a class="line" href="classrostlab_1_1blast_1_1parser__driver.html#a7e9da8fb3b298b04f247856af3220b8d">   79</a></span>&#160;    <a class="code" href="classrostlab_1_1blast_1_1parser__driver.html#a7e9da8fb3b298b04f247856af3220b8d">parser_driver</a>( FILE* __istream = stdin, <span class="keyword">const</span> std::string&amp; __istream_name = <span class="stringliteral">&quot;stdin&quot;</span> ) : _istream_name(__istream_name), _istream(__istream)</div><div class="line"><a name="l00080"></a><span class="lineno">   80</span>&#160;    {</div><div class="line"><a name="l00081"></a><span class="lineno">   81</span>&#160;      _scan_init();</div><div class="line"><a name="l00082"></a><span class="lineno">   82</span>&#160;    }</div><div class="line"><a name="l00083"></a><span class="lineno"><a class="line" href="classrostlab_1_1blast_1_1parser__driver.html#aaaef30dfc4eb6380652d4d73e9c6ecb8">   83</a></span>&#160;    <span class="keyword">virtual</span> <a class="code" href="classrostlab_1_1blast_1_1parser__driver.html#aaaef30dfc4eb6380652d4d73e9c6ecb8">~parser_driver</a>()</div><div class="line"><a name="l00084"></a><span class="lineno">   84</span>&#160;    {</div><div class="line"><a name="l00085"></a><span class="lineno">   85</span>&#160;      _scan_destroy();</div><div class="line"><a name="l00086"></a><span class="lineno">   86</span>&#160;    }</div><div class="line"><a name="l00087"></a><span class="lineno">   87</span>&#160;</div><div class="line"><a name="l00089"></a><span class="lineno">   89</span>&#160;</div><div class="line"><a name="l00090"></a><span class="lineno">   90</span>&#160;    <span class="keyword">const</span> result_type&amp;</div><div class="line"><a name="l00091"></a><span class="lineno">   91</span>&#160;                  <a class="code" href="classrostlab_1_1blast_1_1parser.html#abe30c76f148d07a83796df308c3b53fb">parse</a>( <span class="keywordtype">bool</span> __trace_parsing = <span class="keyword">false</span>, <span class="keywordtype">bool</span> __trace_scanning = <span class="keyword">false</span> ) <span class="keywordflow">throw</span> (<a class="code" href="classrostlab_1_1blast_1_1parser__error.html">rostlab::blast::parser_error</a>);</div><div class="line"><a name="l00092"></a><span class="lineno">   92</span>&#160;</div><div class="line"><a name="l00094"></a><span class="lineno">   94</span>&#160;    <span class="keywordtype">bool</span>          trace_scanning();</div><div class="line"><a name="l00096"></a><span class="lineno">   96</span>&#160;    <span class="keywordtype">void</span>          trace_scanning( <span class="keywordtype">bool</span> __b );</div><div class="line"><a name="l00097"></a><span class="lineno">   97</span>&#160;</div><div class="line"><a name="l00099"></a><span class="lineno"><a class="line" href="classrostlab_1_1blast_1_1parser__driver.html#a4720c3dfb131281b524172dc3152eaad">   99</a></span>&#160;    <span class="keywordtype">void</span>          <a class="code" href="classrostlab_1_1blast_1_1parser__driver.html#a4720c3dfb131281b524172dc3152eaad">error</a>( <span class="keyword">const</span> <a class="code" href="classrostlab_1_1blast_1_1location.html">rostlab::blast::location</a>&amp; __loc, <span class="keyword">const</span> std::string __msg )</div><div class="line"><a name="l00100"></a><span class="lineno">  100</span>&#160;    {</div><div class="line"><a name="l00101"></a><span class="lineno">  101</span>&#160;      std::cerr &lt;&lt; __loc &lt;&lt; <span class="stringliteral">&quot;: &quot;</span> &lt;&lt; __msg &lt;&lt; <span class="stringliteral">&quot;\n&quot;</span>;</div><div class="line"><a name="l00102"></a><span class="lineno">  102</span>&#160;    }</div><div class="line"><a name="l00103"></a><span class="lineno">  103</span>&#160;</div><div class="line"><a name="l00105"></a><span class="lineno"><a class="line" href="classrostlab_1_1blast_1_1parser__driver.html#a789b10a889c9c4127dc8174494b6672d">  105</a></span>&#160;    <span class="keywordtype">void</span>          <a class="code" href="classrostlab_1_1blast_1_1parser__driver.html#a789b10a889c9c4127dc8174494b6672d">error</a>( <span class="keyword">const</span> std::string __msg )</div><div class="line"><a name="l00106"></a><span class="lineno">  106</span>&#160;    {</div><div class="line"><a name="l00107"></a><span class="lineno">  107</span>&#160;      std::cerr &lt;&lt; __msg &lt;&lt; <span class="stringliteral">&quot;\n&quot;</span>;</div><div class="line"><a name="l00108"></a><span class="lineno">  108</span>&#160;    }</div><div class="line"><a name="l00109"></a><span class="lineno">  109</span>&#160;</div><div class="line"><a name="l00111"></a><span class="lineno">  111</span>&#160;</div><div class="line"><a name="l00112"></a><span class="lineno">  112</span>&#160;    <span class="keyword">const</span> result_type&amp;</div><div class="line"><a name="l00113"></a><span class="lineno"><a class="line" href="classrostlab_1_1blast_1_1parser__driver.html#a965558002c26320c6f53470f736ea4b5">  113</a></span>&#160;                  <a class="code" href="classrostlab_1_1blast_1_1parser__driver.html#a965558002c26320c6f53470f736ea4b5">result</a>()<span class="keyword"> const </span>{ <span class="keywordflow">return</span> _result; }</div><div class="line"><a name="l00114"></a><span class="lineno">  114</span>&#160;};</div><div class="line"><a name="l00115"></a><span class="lineno">  115</span>&#160;</div><div class="line"><a name="l00116"></a><span class="lineno">  116</span>&#160;} <span class="comment">// namespace blast</span></div><div class="line"><a name="l00117"></a><span class="lineno">  117</span>&#160;</div><div class="line"><a name="l00118"></a><span class="lineno">  118</span>&#160;} <span class="comment">// namespace rostlab</span></div><div class="line"><a name="l00119"></a><span class="lineno">  119</span>&#160;</div><div class="line"><a name="l00120"></a><span class="lineno">  120</span>&#160;<span class="preprocessor">#endif // ROSTLAB_BLAST_PARSER_DRIVER_H</span></div><div class="line"><a name="l00121"></a><span class="lineno">  121</span>&#160;</div><div class="line"><a name="l00122"></a><span class="lineno">  122</span>&#160;<span class="comment">// vim:et:ts=4:ai:</span></div><div class="ttc" id="classrostlab_1_1blast_1_1parser_html"><div class="ttname"><a href="classrostlab_1_1blast_1_1parser.html">rostlab::blast::parser</a></div><div class="ttdoc">A Bison parser. </div><div class="ttdef"><b>Definition:</b> <a href="blast-parser-parser_8h_source.html#l00128">blast-parser-parser.h:128</a></div></div>
<div class="ttc" id="classrostlab_1_1blast_1_1parser__driver_html_a965558002c26320c6f53470f736ea4b5"><div class="ttname"><a href="classrostlab_1_1blast_1_1parser__driver.html#a965558002c26320c6f53470f736ea4b5">rostlab::blast::parser_driver::result</a></div><div class="ttdeci">const result_type &amp; result() const </div><div class="ttdoc">Read-only access to results. </div><div class="ttdef"><b>Definition:</b> <a href="blast-parser-driver_8h_source.html#l00113">blast-parser-driver.h:113</a></div></div>
<div class="ttc" id="blast-result_8h_html"><div class="ttname"><a href="blast-result_8h.html">blast-result.h</a></div></div>
<div class="ttc" id="classrostlab_1_1blast_1_1parser_html_abe30c76f148d07a83796df308c3b53fb"><div class="ttname"><a href="classrostlab_1_1blast_1_1parser.html#abe30c76f148d07a83796df308c3b53fb">rostlab::blast::parser::parse</a></div><div class="ttdeci">virtual int parse()</div></div>
<div class="ttc" id="classrostlab_1_1blast_1_1parser__driver_html_aaaef30dfc4eb6380652d4d73e9c6ecb8"><div class="ttname"><a href="classrostlab_1_1blast_1_1parser__driver.html#aaaef30dfc4eb6380652d4d73e9c6ecb8">rostlab::blast::parser_driver::~parser_driver</a></div><div class="ttdeci">virtual ~parser_driver()</div><div class="ttdef"><b>Definition:</b> <a href="blast-parser-driver_8h_source.html#l00083">blast-parser-driver.h:83</a></div></div>
<div class="ttc" id="blast-parser-driver_8h_html_a42a0bbb9c998707636151907fae15873"><div class="ttname"><a href="blast-parser-driver_8h.html#a42a0bbb9c998707636151907fae15873">YY_DECL_FRIEND</a></div><div class="ttdeci">#define YY_DECL_FRIEND</div><div class="ttdef"><b>Definition:</b> <a href="blast-parser-driver_8h_source.html#l00038">blast-parser-driver.h:38</a></div></div>
<div class="ttc" id="blast-parser-driver_8h_html_ae5b01ac2fa5a6ad5fb97559638abe686"><div class="ttname"><a href="blast-parser-driver_8h.html#ae5b01ac2fa5a6ad5fb97559638abe686">YY_DECL</a></div><div class="ttdeci">#define YY_DECL</div><div class="ttdef"><b>Definition:</b> <a href="blast-parser-driver_8h_source.html#l00030">blast-parser-driver.h:30</a></div></div>
<div class="ttc" id="classrostlab_1_1blast_1_1parser__driver_html_a789b10a889c9c4127dc8174494b6672d"><div class="ttname"><a href="classrostlab_1_1blast_1_1parser__driver.html#a789b10a889c9c4127dc8174494b6672d">rostlab::blast::parser_driver::error</a></div><div class="ttdeci">void error(const std::string __msg)</div><div class="ttdoc">Print error message. </div><div class="ttdef"><b>Definition:</b> <a href="blast-parser-driver_8h_source.html#l00105">blast-parser-driver.h:105</a></div></div>
<div class="ttc" id="namespacerostlab_html"><div class="ttname"><a href="namespacerostlab.html">rostlab</a></div><div class="ttdef"><b>Definition:</b> <a href="blast-parser-driver_8h_source.html#l00045">blast-parser-driver.h:45</a></div></div>
<div class="ttc" id="structrostlab_1_1blast_1_1result_html"><div class="ttname"><a href="structrostlab_1_1blast_1_1result.html">rostlab::blast::result</a></div><div class="ttdoc">Blast result for one query. </div><div class="ttdef"><b>Definition:</b> <a href="blast-result_8h_source.html#l00165">blast-result.h:165</a></div></div>
<div class="ttc" id="classrostlab_1_1blast_1_1parser__driver_html_a4720c3dfb131281b524172dc3152eaad"><div class="ttname"><a href="classrostlab_1_1blast_1_1parser__driver.html#a4720c3dfb131281b524172dc3152eaad">rostlab::blast::parser_driver::error</a></div><div class="ttdeci">void error(const rostlab::blast::location &amp;__loc, const std::string __msg)</div><div class="ttdoc">Print error message for given location. </div><div class="ttdef"><b>Definition:</b> <a href="blast-parser-driver_8h_source.html#l00099">blast-parser-driver.h:99</a></div></div>
<div class="ttc" id="classrostlab_1_1blast_1_1location_html"><div class="ttname"><a href="classrostlab_1_1blast_1_1location.html">rostlab::blast::location</a></div><div class="ttdoc">Abstract a location. </div><div class="ttdef"><b>Definition:</b> <a href="blast-parser-location_8h_source.html#l00047">blast-parser-location.h:47</a></div></div>
<div class="ttc" id="classrostlab_1_1blast_1_1parser__driver_html_a7e9da8fb3b298b04f247856af3220b8d"><div class="ttname"><a href="classrostlab_1_1blast_1_1parser__driver.html#a7e9da8fb3b298b04f247856af3220b8d">rostlab::blast::parser_driver::parser_driver</a></div><div class="ttdeci">parser_driver(FILE *__istream=stdin, const std::string &amp;__istream_name=&quot;stdin&quot;)</div><div class="ttdef"><b>Definition:</b> <a href="blast-parser-driver_8h_source.html#l00079">blast-parser-driver.h:79</a></div></div>
<div class="ttc" id="classrostlab_1_1blast_1_1parser__error_html_a90f098161f0a51cb592f6def82616d5b"><div class="ttname"><a href="classrostlab_1_1blast_1_1parser__error.html#a90f098161f0a51cb592f6def82616d5b">rostlab::blast::parser_error::parser_error</a></div><div class="ttdeci">parser_error(const std::string &amp;__msg)</div><div class="ttdef"><b>Definition:</b> <a href="blast-parser-driver_8h_source.html#l00052">blast-parser-driver.h:52</a></div></div>
<div class="ttc" id="blast-parser-parser_8h_html"><div class="ttname"><a href="blast-parser-parser_8h.html">blast-parser-parser.h</a></div></div>
<div class="ttc" id="classrostlab_1_1blast_1_1parser__error_html"><div class="ttname"><a href="classrostlab_1_1blast_1_1parser__error.html">rostlab::blast::parser_error</a></div><div class="ttdef"><b>Definition:</b> <a href="blast-parser-driver_8h_source.html#l00049">blast-parser-driver.h:49</a></div></div>
<div class="ttc" id="classrostlab_1_1blast_1_1parser__driver_html_aa4a066d4b51108c2aa2896e8fed77951"><div class="ttname"><a href="classrostlab_1_1blast_1_1parser__driver.html#aa4a066d4b51108c2aa2896e8fed77951">rostlab::blast::parser_driver::result_type</a></div><div class="ttdeci">rostlab::blast::result result_type</div><div class="ttdef"><b>Definition:</b> <a href="blast-parser-driver_8h_source.html#l00063">blast-parser-driver.h:63</a></div></div>
<div class="ttc" id="classrostlab_1_1blast_1_1parser__driver_html"><div class="ttname"><a href="classrostlab_1_1blast_1_1parser__driver.html">rostlab::blast::parser_driver</a></div><div class="ttdoc">Blast (default, -m 0) output parser. </div><div class="ttdef"><b>Definition:</b> <a href="blast-parser-driver_8h_source.html#l00059">blast-parser-driver.h:59</a></div></div>
</div><!-- fragment --></div><!-- contents -->
<!-- start footer part -->
<hr class="footer"/><address class="footer"><small>
Generated by &#160;<a href="http://www.doxygen.org/index.html">
<img class="footer" src="doxygen.png" alt="doxygen"/>
</a> 1.8.11
</small></address>
</body>
</html>

APT Browse - Built by Thomas Orozco.