/usr/share/doc/mia-2.4/userref/SecPlugintype2dimagefilter.html is in mia-tools-doc 2.4.3-5.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 | <html><head><meta http-equiv="Content-Type" content="text/html; charset=ISO-8859-1"><title>Plugin type: 2dimage/filter</title><link rel="stylesheet" type="text/css" href="progref.css"><meta name="generator" content="DocBook XSL Stylesheets V1.79.1"><link rel="home" href="index.html" title="Mia Program Reference"><link rel="up" href="plugins.html" title="Chapter 3. Plugin Reference"><link rel="prev" href="SecPlugintype2dimagecreator.html" title="Plugin type: 2dimage/creator"><link rel="next" href="SecPlugintype2dimagefullcost.html" title="Plugin type: 2dimage/fullcost"></head><body bgcolor="white" text="black" link="#0000FF" vlink="#840084" alink="#0000FF"><div class="navheader"><table width="100%" summary="Navigation header"><tr><th colspan="3" align="center">Plugin type: 2dimage/filter</th></tr><tr><td width="20%" align="left"><a accesskey="p" href="SecPlugintype2dimagecreator.html">Prev</a> </td><th width="60%" align="center">Chapter 3. Plugin Reference</th><td width="20%" align="right"> <a accesskey="n" href="SecPlugintype2dimagefullcost.html">Next</a></td></tr></table><hr></div><div class="section"><div class="titlepage"><div><div><h2 class="title" style="clear: both"><a name="SecPlugintype2dimagefilter"></a>Plugin type: 2dimage/filter</h2></div></div></div><p class="plugdescr">These plug-ins provide 2D image filters. Unless otherwise noted, they take a gray scale image of abitrary pixel type as input, process it and return the result as newly created image. Filters can be chained by specifying more then one filter description concated with the '+' sign. for example
bandpass:min=10,max=20+median:w=3+convert:repn=ushort:map=copy'
will create a filter chain that first runs a bandpass, then a median filter and a conversion to unsigned short values by a plain copy.</p><h4><a name="idp15373"></a>Plugins:</h4><p class="pluginlist">
<a class="xref" href="SecPlugintype2dimagefilter.html#pluginadaptmed2dimagefilter" title="adaptmed">adaptmed</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#pluginadmean2dimagefilter" title="admean">admean</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#pluginaniso2dimagefilter" title="aniso">aniso</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#pluginbandpass2dimagefilter" title="bandpass">bandpass</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#pluginbinarize2dimagefilter" title="binarize">binarize</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#pluginclose2dimagefilter" title="close">close</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#plugincombiner2dimagefilter" title="combiner">combiner</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#pluginconvert2dimagefilter" title="convert">convert</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#plugincrop2dimagefilter" title="crop">crop</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#plugindilate2dimagefilter" title="dilate">dilate</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#plugindistance2dimagefilter" title="distance">distance</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#plugindownscale2dimagefilter" title="downscale">downscale</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#pluginerode2dimagefilter" title="erode">erode</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#plugingauss2dimagefilter" title="gauss">gauss</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#plugingradnorm2dimagefilter" title="gradnorm">gradnorm</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#plugininvert2dimagefilter" title="invert">invert</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#pluginkmeans2dimagefilter" title="kmeans">kmeans</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#pluginlabel2dimagefilter" title="label">label</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#pluginlabelmap2dimagefilter" title="labelmap">labelmap</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#pluginlabelscale2dimagefilter" title="labelscale">labelscale</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#pluginload2dimagefilter" title="load">load</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#pluginmask2dimagefilter" title="mask">mask</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#pluginmaxflow2dimagefilter" title="maxflow">maxflow</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#pluginmean2dimagefilter" title="mean">mean</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#pluginmeanvar2dimagefilter" title="meanvar">meanvar</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#pluginmedian2dimagefilter" title="median">median</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#pluginmedianmad2dimagefilter" title="medianmad">medianmad</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#pluginmlv2dimagefilter" title="mlv">mlv</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#pluginngfnorm2dimagefilter" title="ngfnorm">ngfnorm</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#pluginnoise2dimagefilter" title="noise">noise</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#pluginopen2dimagefilter" title="open">open</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#pluginpruning2dimagefilter" title="pruning">pruning</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#pluginregiongrow2dimagefilter" title="regiongrow">regiongrow</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#pluginsandp2dimagefilter" title="sandp">sandp</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#pluginscale2dimagefilter" title="scale">scale</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#pluginselectbig2dimagefilter" title="selectbig">selectbig</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#pluginsepconv2dimagefilter" title="sepconv">sepconv</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#pluginshmean2dimagefilter" title="shmean">shmean</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#pluginsobel2dimagefilter" title="sobel">sobel</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#pluginsort-label2dimagefilter" title="sort-label">sort-label</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#pluginsws2dimagefilter" title="sws">sws</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#plugintee2dimagefilter" title="tee">tee</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#pluginthinning2dimagefilter" title="thinning">thinning</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#pluginthresh2dimagefilter" title="thresh">thresh</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#plugintmean2dimagefilter" title="tmean">tmean</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#plugintransform2dimagefilter" title="transform">transform</a>
<a class="xref" href="SecPlugintype2dimagefilter.html#pluginws2dimagefilter" title="ws">ws</a>
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginadaptmed2dimagefilter"></a>adaptmed</h5></div></div></div><p class="plugindescr">2D image adaptive median filter. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">w</td><td align="center" valign="top">int in [1, inf)</td><td align="center" valign="top">2</td><td align="left" valign="top">half filter width</td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginadmean2dimagefilter"></a>admean</h5></div></div></div><p class="plugindescr">An adaptive mean filter that works like a normal mean filter, if the intensity variation within the filter mask is lower then the intensity variation in the whole image, that the uses a special formula if the local variation is higher then the image intensity variation.. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">w</td><td align="center" valign="top">int in [1, inf)</td><td align="center" valign="top">1</td><td align="left" valign="top">half filter width</td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginaniso2dimagefilter"></a>aniso</h5></div></div></div><p class="plugindescr">2D Anisotropic image filter. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">epsilon</td><td align="center" valign="top">float in (0, inf)</td><td align="center" valign="top">1</td><td align="left" valign="top">iteration change threshold</td></tr><tr><td align="center" valign="top">iter</td><td align="center" valign="top">int in [1, 10000]</td><td align="center" valign="top">100</td><td align="left" valign="top">number of iterations</td></tr><tr><td align="center" valign="top">k</td><td align="center" valign="top">float in [0, 100]</td><td align="center" valign="top">-1</td><td align="left" valign="top">k the noise threshold (<=0 -> adaptive)</td></tr><tr><td align="center" valign="top">n</td><td align="center" valign="top">set</td><td align="center" valign="top">8</td><td align="left" valign="top">neighbourhood Supported values are:(4, 8, )</td></tr><tr><td align="center" valign="top">psi</td><td align="center" valign="top">dict</td><td align="center" valign="top">tuckey</td><td><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col class="sc0"><col class="sc1"></colgroup><tbody><tr><td colspan="2" align="left" valign="top">edge stopping function</td></tr><tr><td align="left" valign="top">guess:</td><td align="left" valign="top">test stopping function</td></tr><tr><td align="left" valign="top">tuckey:</td><td align="left" valign="top">tukey stopping function</td></tr><tr><td align="left" valign="top">pm1:</td><td align="left" valign="top">stopping function 1</td></tr><tr><td align="left" valign="top">pm2:</td><td align="left" valign="top">stopping function 2</td></tr></tbody></table></div></td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginbandpass2dimagefilter"></a>bandpass</h5></div></div></div><p class="plugindescr">intensity bandpass filter. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">max</td><td align="center" valign="top">float</td><td align="center" valign="top">3.40282e+38</td><td align="left" valign="top">maximum of the band</td></tr><tr><td align="center" valign="top">min</td><td align="center" valign="top">float</td><td align="center" valign="top">0</td><td align="left" valign="top">minimum of the band</td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginbinarize2dimagefilter"></a>binarize</h5></div></div></div><p class="plugindescr">image binarize filter. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">max</td><td align="center" valign="top">float</td><td align="center" valign="top">3.40282e+38</td><td align="left" valign="top">maximum of accepted range</td></tr><tr><td align="center" valign="top">min</td><td align="center" valign="top">float</td><td align="center" valign="top">0</td><td align="left" valign="top">minimum of accepted range</td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginclose2dimagefilter"></a>close</h5></div></div></div><p class="plugindescr">morphological close. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">hint</td><td align="center" valign="top">set</td><td align="center" valign="top">black</td><td align="left" valign="top">a hint at the main image content Supported values are:(black, white, )</td></tr><tr><td align="center" valign="top">shape</td><td align="center" valign="top">factory</td><td align="center" valign="top">[sphere:r=2]</td><td align="left" valign="top">structuring element. For supported plug-ins see <a class="xref" href="SecPlugintype2dimageshape.html" title="Plugin type: 2dimage/shape">Plugin type: 2dimage/shape</a></td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="plugincombiner2dimagefilter"></a>combiner</h5></div></div></div><p class="plugindescr">Combine two images with the given combiner operator. if 'reverse' is set to false, the first operator is the image passed through the filter pipeline, and the second image is loaded from the file given with the 'image' parameter the moment the filter is run.. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">image</td><td align="center" valign="top">string</td><td align="center" valign="top">(input,required)</td><td align="left" valign="top">second image that is needed in the combiner</td></tr><tr><td align="center" valign="top">op</td><td align="center" valign="top">factory</td><td align="center" valign="top">(required)</td><td align="left" valign="top">Image combiner to be applied to the images. For supported plug-ins see <a class="xref" href="SecPlugintype2dimagecombiner.html" title="Plugin type: 2dimage/combiner">Plugin type: 2dimage/combiner</a></td></tr><tr><td align="center" valign="top">reverse</td><td align="center" valign="top">bool</td><td align="center" valign="top">0</td><td align="left" valign="top">reverse the order in which the images passed to the combiner</td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginconvert2dimagefilter"></a>convert</h5></div></div></div><p class="plugindescr">image pixel format conversion filter. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">a</td><td align="center" valign="top">float</td><td align="center" valign="top">1</td><td align="left" valign="top">linear conversion parameter a</td></tr><tr><td align="center" valign="top">b</td><td align="center" valign="top">float</td><td align="center" valign="top">0</td><td align="left" valign="top">linear conversion parameter b</td></tr><tr><td align="center" valign="top">map</td><td align="center" valign="top">dict</td><td align="center" valign="top">opt</td><td><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col class="sc0"><col class="sc1"></colgroup><tbody><tr><td colspan="2" align="left" valign="top">conversion mapping</td></tr><tr><td align="left" valign="top">opt:</td><td align="left" valign="top">apply a linear transformation that maps the real input range to the full output range</td></tr><tr><td align="left" valign="top">range:</td><td align="left" valign="top">apply linear transformation that maps the input data type range to the output data type range</td></tr><tr><td align="left" valign="top">copy:</td><td align="left" valign="top">copy data when converting</td></tr><tr><td align="left" valign="top">linear:</td><td align="left" valign="top">apply linear transformation x -> a*x+b</td></tr><tr><td align="left" valign="top">optstat:</td><td align="left" valign="top">apply a linear transform that maps based on input mean and variation to the full output range</td></tr></tbody></table></div></td></tr><tr><td align="center" valign="top">repn</td><td align="center" valign="top">dict</td><td align="center" valign="top">ubyte</td><td><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col class="sc0"><col class="sc1"></colgroup><tbody><tr><td colspan="2" align="left" valign="top">output pixel type</td></tr><tr><td align="left" valign="top">none:</td><td align="left" valign="top">no pixel type defined</td></tr><tr><td align="left" valign="top">float:</td><td align="left" valign="top">floating point 32 bit</td></tr><tr><td align="left" valign="top">sbyte:</td><td align="left" valign="top">signed 8 bit</td></tr><tr><td align="left" valign="top">ulong:</td><td align="left" valign="top">unsigned 64 bit</td></tr><tr><td align="left" valign="top">double:</td><td align="left" valign="top">floating point 64 bit</td></tr><tr><td align="left" valign="top">sint:</td><td align="left" valign="top">signed 32 bit</td></tr><tr><td align="left" valign="top">ushort:</td><td align="left" valign="top">unsigned 16 bit</td></tr><tr><td align="left" valign="top">sshort:</td><td align="left" valign="top">signed 16 bit</td></tr><tr><td align="left" valign="top">uint:</td><td align="left" valign="top">unsigned 32 bit</td></tr><tr><td align="left" valign="top">slong:</td><td align="left" valign="top">signed 64 bit</td></tr><tr><td align="left" valign="top">bit:</td><td align="left" valign="top">binary data</td></tr><tr><td align="left" valign="top">ubyte:</td><td align="left" valign="top">unsigned 8 bit</td></tr></tbody></table></div></td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="plugincrop2dimagefilter"></a>crop</h5></div></div></div><p class="plugindescr">Crop a region of an image, the region is always clamped to the original image size.. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">end</td><td align="center" valign="top">streamable</td><td align="center" valign="top">[[-1,-1]]</td><td align="left" valign="top">end of crop region</td></tr><tr><td align="center" valign="top">start</td><td align="center" valign="top">streamable</td><td align="center" valign="top">[[0,0]]</td><td align="left" valign="top">start of crop region</td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="plugindilate2dimagefilter"></a>dilate</h5></div></div></div><p class="plugindescr">2d image stack dilate filter. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">hint</td><td align="center" valign="top">set</td><td align="center" valign="top">black</td><td align="left" valign="top">a hint at the main image content Supported values are:(black, white, )</td></tr><tr><td align="center" valign="top">shape</td><td align="center" valign="top">factory</td><td align="center" valign="top">[sphere:r=2]</td><td align="left" valign="top">structuring element. For supported plug-ins see <a class="xref" href="SecPlugintype2dimageshape.html" title="Plugin type: 2dimage/shape">Plugin type: 2dimage/shape</a></td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="plugindistance2dimagefilter"></a>distance</h5></div></div></div><p class="plugindescr">2D image distance filter, evaluates the distance map for a binary mask.. (This plug-in doesn't take parameters)</p></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="plugindownscale2dimagefilter"></a>downscale</h5></div></div></div><p class="plugindescr">Downscale the input image by using a given block size to define the downscale factor. Prior to scaling the image is filtered by a smoothing filter to eliminate high frequency data and avoid aliasing artifacts.. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">b</td><td align="center" valign="top">2dbounds</td><td align="center" valign="top">[[1,1]]</td><td align="left" valign="top">blocksize</td></tr><tr><td align="center" valign="top">bx</td><td align="center" valign="top">uint in [1, inf)</td><td align="center" valign="top">1</td><td align="left" valign="top">blocksize in x direction</td></tr><tr><td align="center" valign="top">by</td><td align="center" valign="top">uint in [1, inf)</td><td align="center" valign="top">1</td><td align="left" valign="top">blocksize in y direction</td></tr><tr><td align="center" valign="top">kernel</td><td align="center" valign="top">string</td><td align="center" valign="top">gauss</td><td align="left" valign="top">smoothing filter kernel to be applied, the size of the filter is estimated based on the blocksize.</td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginerode2dimagefilter"></a>erode</h5></div></div></div><p class="plugindescr">2d image stack erode filter. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">hint</td><td align="center" valign="top">set</td><td align="center" valign="top">black</td><td align="left" valign="top">a hint at the main image content Supported values are:(black, white, )</td></tr><tr><td align="center" valign="top">shape</td><td align="center" valign="top">factory</td><td align="center" valign="top">[sphere:r=2]</td><td align="left" valign="top">structuring element. For supported plug-ins see <a class="xref" href="SecPlugintype2dimageshape.html" title="Plugin type: 2dimage/shape">Plugin type: 2dimage/shape</a></td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="plugingauss2dimagefilter"></a>gauss</h5></div></div></div><p class="plugindescr">isotropic 2D gauss filter. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">w</td><td align="center" valign="top">int in [0, inf)</td><td align="center" valign="top">1</td><td align="left" valign="top">filter width parameter</td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="plugingradnorm2dimagefilter"></a>gradnorm</h5></div></div></div><p class="plugindescr">2D image to gradient norm filter. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">normalize</td><td align="center" valign="top">bool</td><td align="center" valign="top">0</td><td align="left" valign="top">Normalize the gradient norms to range [0,1].</td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="plugininvert2dimagefilter"></a>invert</h5></div></div></div><p class="plugindescr">intensity invert filter. (This plug-in doesn't take parameters)</p></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginkmeans2dimagefilter"></a>kmeans</h5></div></div></div><p class="plugindescr">2D image k-means filter. In the output image the pixel value represents the class membership and the class centers are stored as attribute in the image.. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">c</td><td align="center" valign="top">int in [2, inf)</td><td align="center" valign="top">3</td><td align="left" valign="top">number of classes</td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginlabel2dimagefilter"></a>label</h5></div></div></div><p class="plugindescr">Label connected components in a binary 2D image.. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">n</td><td align="center" valign="top">factory</td><td align="center" valign="top">4n</td><td align="left" valign="top">Neighborhood mask to describe connectivity.. For supported plug-ins see <a class="xref" href="SecPlugintype2dimageshape.html" title="Plugin type: 2dimage/shape">Plugin type: 2dimage/shape</a></td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginlabelmap2dimagefilter"></a>labelmap</h5></div></div></div><p class="plugindescr">Image filter to remap label id's. Only applicable to images with integer valued intensities/labels.. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">map</td><td align="center" valign="top">string</td><td align="center" valign="top">(input,required)</td><td align="left" valign="top">Label mapping file</td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginlabelscale2dimagefilter"></a>labelscale</h5></div></div></div><p class="plugindescr">A filter that only creates output voxels that are already created in the input image. Scaling is done by using a voting algorithms that selects the target pixel value based on the highest pixel count of a certain label in the corresponding source region. If the region comprises two labels with the same count, the one with the lower number wins.. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">out-size</td><td align="center" valign="top">2dbounds</td><td align="center" valign="top">(required)</td><td align="left" valign="top">target size given as two coma separated values</td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginload2dimagefilter"></a>load</h5></div></div></div><p class="plugindescr">Load the input image from a file and use it to replace the current image in the pipeline.. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">file</td><td align="center" valign="top">string</td><td align="center" valign="top">(input,required)</td><td align="left" valign="top">name of the input file to load from.</td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginmask2dimagefilter"></a>mask</h5></div></div></div><p class="plugindescr">2D masking, one of the two input images must by of type bit.. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">fill</td><td align="center" valign="top">dict</td><td align="center" valign="top">min</td><td><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col class="sc0"><col class="sc1"></colgroup><tbody><tr><td colspan="2" align="left" valign="top">fill style for pixels outside of the mask</td></tr><tr><td align="left" valign="top">max:</td><td align="left" valign="top">set values outside the mask to the maximum value found in the image..</td></tr><tr><td align="left" valign="top">zero:</td><td align="left" valign="top">set the values outside the mask to zero.</td></tr><tr><td align="left" valign="top">min:</td><td align="left" valign="top">set values outside the mask to the minimum value found in the image.</td></tr></tbody></table></div></td></tr><tr><td align="center" valign="top">input</td><td align="center" valign="top">string</td><td align="center" valign="top">(input,required)</td><td align="left" valign="top">second input image file name</td></tr><tr><td align="center" valign="top">inverse</td><td align="center" valign="top">bool</td><td align="center" valign="top">0</td><td align="left" valign="top">set to true to use the inverse of the mask for masking</td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginmaxflow2dimagefilter"></a>maxflow</h5></div></div></div><p class="plugindescr">This filter implements the uses the max-flow min-cut algorithmfor image segmentation. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">sink-flow</td><td align="center" valign="top">string</td><td align="center" valign="top">(input,required)</td><td align="left" valign="top">Image of float type to define the per-pixel flow to the sink</td></tr><tr><td align="center" valign="top">source-flow</td><td align="center" valign="top">string</td><td align="center" valign="top">(input,required)</td><td align="left" valign="top">Image of float type to define the per-pixel flow to the source</td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginmean2dimagefilter"></a>mean</h5></div></div></div><p class="plugindescr">2D image mean filter. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">w</td><td align="center" valign="top">int in [1, inf)</td><td align="center" valign="top">1</td><td align="left" valign="top">half filter width</td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginmeanvar2dimagefilter"></a>meanvar</h5></div></div></div><p class="plugindescr">Filter that evaluates simultaniously the pixel wise mean and the variance of an image in a given window. Pixel intensities below the given threshold will be ignored and at their loctions the output mean and variation are set to zero. The mean intensity image is directly passed as float image to the pipeline, the variation image is saved to a file given with the varfile parameter.. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">thresh</td><td align="center" valign="top">double in [0, inf)</td><td align="center" valign="top">0</td><td align="left" valign="top">Intensity thresholding parameter: Pixels with intensities below this threshold will be set to zero, and also not used when evaluating mean and variation</td></tr><tr><td align="center" valign="top">varfile</td><td align="center" valign="top">string</td><td align="center" valign="top">(output,required)</td><td align="left" valign="top">name of the output file to save the variation image too.</td></tr><tr><td align="center" valign="top">w</td><td align="center" valign="top">uint in [1, inf)</td><td align="center" valign="top">1</td><td align="left" valign="top">filter width parameter</td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginmedian2dimagefilter"></a>median</h5></div></div></div><p class="plugindescr">2D image median filter. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">w</td><td align="center" valign="top">int in [1, inf)</td><td align="center" valign="top">1</td><td align="left" valign="top">half filter width</td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginmedianmad2dimagefilter"></a>medianmad</h5></div></div></div><p class="plugindescr">Filter that evaluates simultaniously the pixel wise median and the median absolute deviation (MAD) of an image in a given window. Pixel intensities below the given threshold will be ignored and at their loctions the output median and MAD are set to zero. The median intensity image is directly passed to the pipeline, the variation image is saved to a file given with the varfile parameter. Both output images have the same pixel type like the input image.. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">madfile</td><td align="center" valign="top">string</td><td align="center" valign="top">(output,required)</td><td align="left" valign="top">name of the output file to save the median absolute deviation image too.</td></tr><tr><td align="center" valign="top">thresh</td><td align="center" valign="top">double in [0, inf)</td><td align="center" valign="top">0</td><td align="left" valign="top">Intensity thresholding parameter: Pixels with intensities below this threshold will be set to zero, and also not used when evaluating mean and variation</td></tr><tr><td align="center" valign="top">w</td><td align="center" valign="top">uint in [1, inf)</td><td align="center" valign="top">1</td><td align="left" valign="top">filter width parameter</td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginmlv2dimagefilter"></a>mlv</h5></div></div></div><p class="plugindescr">Mean of Least Variance 2D image filter. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">w</td><td align="center" valign="top">int in [1, inf)</td><td align="center" valign="top">1</td><td align="left" valign="top">filter width parameter</td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginngfnorm2dimagefilter"></a>ngfnorm</h5></div></div></div><p class="plugindescr">2D image to normalized-gradiend-field-norm filter. (This plug-in doesn't take parameters)</p></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginnoise2dimagefilter"></a>noise</h5></div></div></div><p class="plugindescr">2D image noise filter: add additive or modulated noise to an image. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">g</td><td align="center" valign="top">factory</td><td align="center" valign="top">[gauss:mu=0,sigma=10]</td><td align="left" valign="top">noise generator. For supported plug-ins see <a class="xref" href="SecPlugintypegeneratornoise.html" title="Plugin type: generator/noise">Plugin type: generator/noise</a></td></tr><tr><td align="center" valign="top">mod</td><td align="center" valign="top">bool</td><td align="center" valign="top">0</td><td align="left" valign="top">additive or modulated noise</td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginopen2dimagefilter"></a>open</h5></div></div></div><p class="plugindescr">morphological open. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">hint</td><td align="center" valign="top">set</td><td align="center" valign="top">black</td><td align="left" valign="top">a hint at the main image content Supported values are:(black, white, )</td></tr><tr><td align="center" valign="top">shape</td><td align="center" valign="top">factory</td><td align="center" valign="top">[sphere:r=2]</td><td align="left" valign="top">structuring element. For supported plug-ins see <a class="xref" href="SecPlugintype2dimageshape.html" title="Plugin type: 2dimage/shape">Plugin type: 2dimage/shape</a></td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginpruning2dimagefilter"></a>pruning</h5></div></div></div><p class="plugindescr">Morphological pruning. Pruning until convergence will erase all pixels but closed loops.. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">iter</td><td align="center" valign="top">int in [1, 1000000]</td><td align="center" valign="top">0</td><td align="left" valign="top">Number of iterations to run, 0=until convergence</td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginregiongrow2dimagefilter"></a>regiongrow</h5></div></div></div><p class="plugindescr">Region growing startin from a seed until only along increasing gradients. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">n</td><td align="center" valign="top">factory</td><td align="center" valign="top">8n</td><td align="left" valign="top">Neighborhood shape. For supported plug-ins see <a class="xref" href="SecPlugintype2dimageshape.html" title="Plugin type: 2dimage/shape">Plugin type: 2dimage/shape</a></td></tr><tr><td align="center" valign="top">seed</td><td align="center" valign="top">string</td><td align="center" valign="top">(input,required)</td><td align="left" valign="top">seed image (bit valued)</td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginsandp2dimagefilter"></a>sandp</h5></div></div></div><p class="plugindescr">salt and pepper 3d filter. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">thresh</td><td align="center" valign="top">float in (0, inf)</td><td align="center" valign="top">100</td><td align="left" valign="top">thresh value</td></tr><tr><td align="center" valign="top">w</td><td align="center" valign="top">int in [1, inf)</td><td align="center" valign="top">1</td><td align="left" valign="top">filter width parameter</td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginscale2dimagefilter"></a>scale</h5></div></div></div><p class="plugindescr">2D image downscale filter. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">interp</td><td align="center" valign="top">factory</td><td align="center" valign="top">[bspline:d=3]</td><td align="left" valign="top">interpolation method to be used . For supported plug-ins see <a class="xref" href="SecPlugintype1dsplinekernel.html" title="Plugin type: 1d/splinekernel">Plugin type: 1d/splinekernel</a></td></tr><tr><td align="center" valign="top">s</td><td align="center" valign="top">2dbounds</td><td align="center" valign="top">[[0,0]]</td><td align="left" valign="top">target size as 2D vector</td></tr><tr><td align="center" valign="top">sx</td><td align="center" valign="top">uint in [0, inf)</td><td align="center" valign="top">0</td><td align="left" valign="top">target size in x direction, 0: use input size</td></tr><tr><td align="center" valign="top">sy</td><td align="center" valign="top">uint in [0, inf)</td><td align="center" valign="top">0</td><td align="left" valign="top">target size in y direction, 0: use input size</td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginselectbig2dimagefilter"></a>selectbig</h5></div></div></div><p class="plugindescr">2D label select biggest component filter. (This plug-in doesn't take parameters)</p></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginsepconv2dimagefilter"></a>sepconv</h5></div></div></div><p class="plugindescr">2D image intensity separaple convolution filter. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">kx</td><td align="center" valign="top">factory</td><td align="center" valign="top">[gauss:w=1]</td><td align="left" valign="top">filter kernel in x-direction. For supported plug-ins see <a class="xref" href="SecPlugintype1dspacialkernel.html" title="Plugin type: 1d/spacialkernel">Plugin type: 1d/spacialkernel</a></td></tr><tr><td align="center" valign="top">ky</td><td align="center" valign="top">factory</td><td align="center" valign="top">[gauss:w=1]</td><td align="left" valign="top">filter kernel in y-direction. For supported plug-ins see <a class="xref" href="SecPlugintype1dspacialkernel.html" title="Plugin type: 1d/spacialkernel">Plugin type: 1d/spacialkernel</a></td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginshmean2dimagefilter"></a>shmean</h5></div></div></div><p class="plugindescr">2D image filter that evaluates the mean over a given neighborhood shape. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">shape</td><td align="center" valign="top">factory</td><td align="center" valign="top">8n</td><td align="left" valign="top">neighborhood shape to evaluate the mean. For supported plug-ins see <a class="xref" href="SecPlugintype2dimageshape.html" title="Plugin type: 2dimage/shape">Plugin type: 2dimage/shape</a></td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginsobel2dimagefilter"></a>sobel</h5></div></div></div><p class="plugindescr">The 2D Sobel filter for gradient evaluation. Note that the output pixel type of the filtered image is the same as the input pixel type, so converting the input beforehand to a floating point valued image is recommendable.. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">dir</td><td align="center" valign="top">dict</td><td align="center" valign="top">x</td><td><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col class="sc0"><col class="sc1"></colgroup><tbody><tr><td colspan="2" align="left" valign="top">Gradient direction</td></tr><tr><td align="left" valign="top">y:</td><td align="left" valign="top">gradient in y-direction </td></tr><tr><td align="left" valign="top">x:</td><td align="left" valign="top">gradient in x-direction </td></tr></tbody></table></div></td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginsort-label2dimagefilter"></a>sort-label</h5></div></div></div><p class="plugindescr">This plug-in sorts the labels of a gray-scale image so that the lowest label value corresponts to the lable with themost pixels. The background (0) is not touched. (This plug-in doesn't take parameters)</p></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginsws2dimagefilter"></a>sws</h5></div></div></div><p class="plugindescr">seeded watershead. The algorithm extracts exactly so many reagions as initial labels are given in the seed image.. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">grad</td><td align="center" valign="top">bool</td><td align="center" valign="top">0</td><td align="left" valign="top">Interpret the input image as gradient. </td></tr><tr><td align="center" valign="top">mark</td><td align="center" valign="top">bool</td><td align="center" valign="top">0</td><td align="left" valign="top">Mark the segmented watersheds with a special gray scale value</td></tr><tr><td align="center" valign="top">n</td><td align="center" valign="top">factory</td><td align="center" valign="top">[sphere:r=1]</td><td align="left" valign="top">Neighborhood for watershead region growing. For supported plug-ins see <a class="xref" href="SecPlugintype2dimageshape.html" title="Plugin type: 2dimage/shape">Plugin type: 2dimage/shape</a></td></tr><tr><td align="center" valign="top">seed</td><td align="center" valign="top">string</td><td align="center" valign="top">(input,required)</td><td align="left" valign="top">seed input image containing the lables for the initial regions</td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="plugintee2dimagefilter"></a>tee</h5></div></div></div><p class="plugindescr">Save the input image to a file and also pass it through to the next filter. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">file</td><td align="center" valign="top">string</td><td align="center" valign="top">(output,required)</td><td align="left" valign="top">name of the output file to save the image too.</td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginthinning2dimagefilter"></a>thinning</h5></div></div></div><p class="plugindescr">Morphological thinning. Thinning until convergence will result in a 8-connected skeleton. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">iter</td><td align="center" valign="top">int in [1, 1000000]</td><td align="center" valign="top">0</td><td align="left" valign="top">Number of iterations to run, 0=until convergence</td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginthresh2dimagefilter"></a>thresh</h5></div></div></div><p class="plugindescr">This filter sets all pixels of an image to zero that fall below a certain threshold and whose neighbours in a given neighborhood shape also fall below a this threshold. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">shape</td><td align="center" valign="top">factory</td><td align="center" valign="top">4n</td><td align="left" valign="top">neighborhood shape to take into account. For supported plug-ins see <a class="xref" href="SecPlugintype2dimageshape.html" title="Plugin type: 2dimage/shape">Plugin type: 2dimage/shape</a></td></tr><tr><td align="center" valign="top">thresh</td><td align="center" valign="top">double</td><td align="center" valign="top">5</td><td align="left" valign="top">The threshold value</td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="plugintmean2dimagefilter"></a>tmean</h5></div></div></div><p class="plugindescr">2D image thresholded tmean filter: The output pixel value is zero if the input pixel value is below the given threshold, otherwise the pixels in the evaluation windows are only considered if the input pixel intensity is above the threshold.. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">t</td><td align="center" valign="top">float</td><td align="center" valign="top">0</td><td align="left" valign="top">Threshold for pixels not to take into account</td></tr><tr><td align="center" valign="top">w</td><td align="center" valign="top">int in [1, inf)</td><td align="center" valign="top">1</td><td align="left" valign="top">half filter width</td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="plugintransform2dimagefilter"></a>transform</h5></div></div></div><p class="plugindescr">Transform the input image with the given transformation.. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">file</td><td align="center" valign="top">string</td><td align="center" valign="top">(input,required)</td><td align="left" valign="top">Name of the file containing the transformation.</td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginws2dimagefilter"></a>ws</h5></div></div></div><p class="plugindescr">basic watershead segmentation.. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">evalgrad</td><td align="center" valign="top">bool</td><td align="center" valign="top">0</td><td align="left" valign="top">Set to 1 if the input image does not represent a gradient norm image</td></tr><tr><td align="center" valign="top">mark</td><td align="center" valign="top">bool</td><td align="center" valign="top">0</td><td align="left" valign="top">Mark the segmented watersheds with a special gray scale value</td></tr><tr><td align="center" valign="top">n</td><td align="center" valign="top">factory</td><td align="center" valign="top">[sphere:r=1]</td><td align="left" valign="top">Neighborhood for watershead region growing. For supported plug-ins see <a class="xref" href="SecPlugintype2dimageshape.html" title="Plugin type: 2dimage/shape">Plugin type: 2dimage/shape</a></td></tr><tr><td align="center" valign="top">thresh</td><td align="center" valign="top">float in [0, 1)</td><td align="center" valign="top">0</td><td align="left" valign="top">Relative gradient norm threshold. The actual value threshold value is thresh * (max_grad - min_grad) + min_grad. Bassins separated by gradients with a lower norm will be joined</td></tr></tbody></table></div></div><p class="plugin">
</p><h4><a name="idp16746"></a>Plugin consumers:</h4><p class="consumer">
<a class="xref" href="Secmia2dimagefilter.html" title="mia-2dimagefilter">mia-2dimagefilter</a>
<a class="xref" href="Secmia2dimagefilterstack.html" title="mia-2dimagefilterstack">mia-2dimagefilterstack</a>
<a class="xref" href="Secmia2dsegmentfuzzyw.html" title="mia-2dsegment-fuzzyw">mia-2dsegment-fuzzyw</a>
<a class="xref" href="Secmia2dseries2dordermedian.html" title="mia-2dseries2dordermedian">mia-2dseries2dordermedian</a>
<a class="xref" href="Secmia2dseriesgradMAD.html" title="mia-2dseriesgradMAD">mia-2dseriesgradMAD</a>
<a class="xref" href="Secmia2dseriessmoothgradMAD.html" title="mia-2dseriessmoothgradMAD">mia-2dseriessmoothgradMAD</a>
<a class="xref" href="Secmia2dstackfilter.html" title="mia-2dstackfilter">mia-2dstackfilter</a>
<a class="xref" href="SecPlugintype2dstackfilter.html#pluginbyslice2dstackfilter" title="byslice">byslice:2dstack/filter</a>
</p></div><div class="navfooter"><hr><table width="100%" summary="Navigation footer"><tr><td width="40%" align="left"><a accesskey="p" href="SecPlugintype2dimagecreator.html">Prev</a> </td><td width="20%" align="center"><a accesskey="u" href="plugins.html">Up</a></td><td width="40%" align="right"> <a accesskey="n" href="SecPlugintype2dimagefullcost.html">Next</a></td></tr><tr><td width="40%" align="left" valign="top">Plugin type: 2dimage/creator </td><td width="20%" align="center"><a accesskey="h" href="index.html">Home</a></td><td width="40%" align="right" valign="top"> Plugin type: 2dimage/fullcost</td></tr></table></div></body></html>
|