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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 | <html><head><meta http-equiv="Content-Type" content="text/html; charset=ISO-8859-1"><title>Plugin type: 2dimage/fullcost</title><link rel="stylesheet" type="text/css" href="progref.css"><meta name="generator" content="DocBook XSL Stylesheets V1.79.1"><link rel="home" href="index.html" title="Mia Program Reference"><link rel="up" href="plugins.html" title="Chapter 3. Plugin Reference"><link rel="prev" href="SecPlugintype2dimagefilter.html" title="Plugin type: 2dimage/filter"><link rel="next" href="SecPlugintype2dimageio.html" title="Plugin type: 2dimage/io"></head><body bgcolor="white" text="black" link="#0000FF" vlink="#840084" alink="#0000FF"><div class="navheader"><table width="100%" summary="Navigation header"><tr><th colspan="3" align="center">Plugin type: 2dimage/fullcost</th></tr><tr><td width="20%" align="left"><a accesskey="p" href="SecPlugintype2dimagefilter.html">Prev</a> </td><th width="60%" align="center">Chapter 3. Plugin Reference</th><td width="20%" align="right"> <a accesskey="n" href="SecPlugintype2dimageio.html">Next</a></td></tr></table><hr></div><div class="section"><div class="titlepage"><div><div><h2 class="title" style="clear: both"><a name="SecPlugintype2dimagefullcost"></a>Plugin type: 2dimage/fullcost</h2></div></div></div><p class="plugdescr">This class of cost functions evaluates the cost resulting from the use of a certain transformation. This may include a penalty term that ensures the smoothness of a transformation or the evaluation of a similarity measure between a transformed study data set and a reference data set.</p><h4><a name="idp16759"></a>Plugins:</h4><p class="pluginlist">
<a class="xref" href="SecPlugintype2dimagefullcost.html#pluginimage2dimagefullcost" title="image">image</a>
<a class="xref" href="SecPlugintype2dimagefullcost.html#pluginlabelimage2dimagefullcost" title="labelimage">labelimage</a>
<a class="xref" href="SecPlugintype2dimagefullcost.html#pluginmaskedimage2dimagefullcost" title="maskedimage">maskedimage</a>
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginimage2dimagefullcost"></a>image</h5></div></div></div><p class="plugindescr">Generalized image similarity cost function that also handles multi-resolution processing. The actual similarity measure is given es extra parameter.. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">cost</td><td align="center" valign="top">factory</td><td align="center" valign="top">ssd</td><td align="left" valign="top">Cost function kernel. For supported plug-ins see <a class="xref" href="SecPlugintype2dimagecost.html" title="Plugin type: 2dimage/cost">Plugin type: 2dimage/cost</a></td></tr><tr><td align="center" valign="top">debug</td><td align="center" valign="top">bool</td><td align="center" valign="top">0</td><td align="left" valign="top">Save intermediate resuts for debugging</td></tr><tr><td align="center" valign="top">ref</td><td align="center" valign="top">string</td><td align="center" valign="top">(input)</td><td align="left" valign="top">Reference image</td></tr><tr><td align="center" valign="top">src</td><td align="center" valign="top">string</td><td align="center" valign="top">(input)</td><td align="left" valign="top">Study image</td></tr><tr><td align="center" valign="top">weight</td><td align="center" valign="top">float</td><td align="center" valign="top">1</td><td align="left" valign="top">weight of cost function</td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginlabelimage2dimagefullcost"></a>labelimage</h5></div></div></div><p class="plugindescr">Similarity cost function that maps labels of two images and handles label-preserving multi-resolution processing.. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">debug</td><td align="center" valign="top">int in [0, 1]</td><td align="center" valign="top">0</td><td align="left" valign="top">write the distance transforms to a 3D image</td></tr><tr><td align="center" valign="top">maxlabel</td><td align="center" valign="top">int in [2, 32000]</td><td align="center" valign="top">256</td><td align="left" valign="top">maximum number of labels to consider</td></tr><tr><td align="center" valign="top">ref</td><td align="center" valign="top">string</td><td align="center" valign="top">(input)</td><td align="left" valign="top">Reference image</td></tr><tr><td align="center" valign="top">src</td><td align="center" valign="top">string</td><td align="center" valign="top">(input)</td><td align="left" valign="top">Study image</td></tr><tr><td align="center" valign="top">weight</td><td align="center" valign="top">float</td><td align="center" valign="top">1</td><td align="left" valign="top">weight of cost function</td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginmaskedimage2dimagefullcost"></a>maskedimage</h5></div></div></div><p class="plugindescr">Generalized masked image similarity cost function that also handles multi-resolution processing. The provided masks should be densly filled regions in multi-resolution procesing because otherwise the mask information may get lost when downscaling the image. The reference mask and the transformed mask of the study image are combined by binary AND. The actual similarity measure is given es extra parameter.. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">cost</td><td align="center" valign="top">factory</td><td align="center" valign="top">ssd</td><td align="left" valign="top">Cost function kernel. For supported plug-ins see <a class="xref" href="SecPlugintype2dimagemaskedcost.html" title="Plugin type: 2dimage/maskedcost">Plugin type: 2dimage/maskedcost</a></td></tr><tr><td align="center" valign="top">ref</td><td align="center" valign="top">string</td><td align="center" valign="top">(input)</td><td align="left" valign="top">Reference image</td></tr><tr><td align="center" valign="top">ref-mask</td><td align="center" valign="top">string</td><td align="center" valign="top">(input)</td><td align="left" valign="top">Reference image mask (binary)</td></tr><tr><td align="center" valign="top">src</td><td align="center" valign="top">string</td><td align="center" valign="top">(input)</td><td align="left" valign="top">Study image</td></tr><tr><td align="center" valign="top">src-mask</td><td align="center" valign="top">string</td><td align="center" valign="top">(input)</td><td align="left" valign="top">Study image mask (binary)</td></tr><tr><td align="center" valign="top">weight</td><td align="center" valign="top">float</td><td align="center" valign="top">1</td><td align="left" valign="top">weight of cost function</td></tr></tbody></table></div></div><p class="plugin">
</p><h4><a name="idp16900"></a>Plugin consumers:</h4><p class="consumer">
<a class="xref" href="Secmia2dcost.html" title="mia-2dcost">mia-2dcost</a>
<a class="xref" href="Secmia2dimageregistration.html" title="mia-2dimageregistration">mia-2dimageregistration</a>
<a class="xref" href="Secmia2dmany2onenonrigid.html" title="mia-2dmany2one-nonrigid">mia-2dmany2one-nonrigid</a>
<a class="xref" href="Secmia2dmultiforce.html" title="mia-2dmulti-force">mia-2dmulti-force</a>
<a class="xref" href="Secmia2dmultiimageregistration.html" title="mia-2dmultiimageregistration">mia-2dmultiimageregistration</a>
<a class="xref" href="Secmia2dmyoicafull.html" title="mia-2dmyoica-full">mia-2dmyoica-full</a>
<a class="xref" href="Secmia2dmyoicanonrigid.html" title="mia-2dmyoica-nonrigid">mia-2dmyoica-nonrigid</a>
<a class="xref" href="Secmia2dmyoicanonrigidparallel.html" title="mia-2dmyoica-nonrigid-parallel">mia-2dmyoica-nonrigid-parallel</a>
<a class="xref" href="Secmia2dmyoicapgt.html" title="mia-2dmyoicapgt">mia-2dmyoicapgt</a>
<a class="xref" href="Secmia2dmyoperiodicnonrigid.html" title="mia-2dmyoperiodic-nonrigid">mia-2dmyoperiodic-nonrigid</a>
<a class="xref" href="Secmia2dmyoserialnonrigid.html" title="mia-2dmyoserial-nonrigid">mia-2dmyoserial-nonrigid</a>
<a class="xref" href="Secmia2dmyosetall2onenonrigid.html" title="mia-2dmyoset-all2one-nonrigid">mia-2dmyoset-all2one-nonrigid</a>
</p></div><div class="navfooter"><hr><table width="100%" summary="Navigation footer"><tr><td width="40%" align="left"><a accesskey="p" href="SecPlugintype2dimagefilter.html">Prev</a> </td><td width="20%" align="center"><a accesskey="u" href="plugins.html">Up</a></td><td width="40%" align="right"> <a accesskey="n" href="SecPlugintype2dimageio.html">Next</a></td></tr><tr><td width="40%" align="left" valign="top">Plugin type: 2dimage/filter </td><td width="20%" align="center"><a accesskey="h" href="index.html">Home</a></td><td width="40%" align="right" valign="top"> Plugin type: 2dimage/io</td></tr></table></div></body></html>
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