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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 | <html><head><meta http-equiv="Content-Type" content="text/html; charset=ISO-8859-1"><title>Plugin type: 3dimage/cost</title><link rel="stylesheet" type="text/css" href="progref.css"><meta name="generator" content="DocBook XSL Stylesheets V1.79.1"><link rel="home" href="index.html" title="Mia Program Reference"><link rel="up" href="plugins.html" title="Chapter 3. Plugin Reference"><link rel="prev" href="SecPlugintype3dimagecombiner.html" title="Plugin type: 3dimage/combiner"><link rel="next" href="SecPlugintype3dimagecreator.html" title="Plugin type: 3dimage/creator"></head><body bgcolor="white" text="black" link="#0000FF" vlink="#840084" alink="#0000FF"><div class="navheader"><table width="100%" summary="Navigation header"><tr><th colspan="3" align="center">Plugin type: 3dimage/cost</th></tr><tr><td width="20%" align="left"><a accesskey="p" href="SecPlugintype3dimagecombiner.html">Prev</a> </td><th width="60%" align="center">Chapter 3. Plugin Reference</th><td width="20%" align="right"> <a accesskey="n" href="SecPlugintype3dimagecreator.html">Next</a></td></tr></table><hr></div><div class="section"><div class="titlepage"><div><div><h2 class="title" style="clear: both"><a name="SecPlugintype3dimagecost"></a>Plugin type: 3dimage/cost</h2></div></div></div><p class="plugdescr">3D image similarity kernels evaluate the according similarity measure between two images. These kernels may be used standalone, like e.g. in linear registration, or will be called from generalized image similarity cost plug-ins that also take care of transforming and scaling the images during the image registration process.</p><h4><a name="idp18010"></a>Plugins:</h4><p class="pluginlist">
<a class="xref" href="SecPlugintype3dimagecost.html#pluginlncc3dimagecost" title="lncc">lncc</a>
<a class="xref" href="SecPlugintype3dimagecost.html#pluginmi3dimagecost" title="mi">mi</a>
<a class="xref" href="SecPlugintype3dimagecost.html#pluginncc3dimagecost" title="ncc">ncc</a>
<a class="xref" href="SecPlugintype3dimagecost.html#pluginngf3dimagecost" title="ngf">ngf</a>
<a class="xref" href="SecPlugintype3dimagecost.html#pluginssd3dimagecost" title="ssd">ssd</a>
<a class="xref" href="SecPlugintype3dimagecost.html#pluginssd-automask3dimagecost" title="ssd-automask">ssd-automask</a>
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginlncc3dimagecost"></a>lncc</h5></div></div></div><p class="plugindescr">local normalized cross correlation with masking support.. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">w</td><td align="center" valign="top">uint in [1, 256]</td><td align="center" valign="top">5</td><td align="left" valign="top">half width of the window used for evaluating the localized cross correlation</td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginmi3dimagecost"></a>mi</h5></div></div></div><p class="plugindescr">Spline parzen based mutual information.. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">cut</td><td align="center" valign="top">float in [0, 40]</td><td align="center" valign="top">0</td><td align="left" valign="top">Percentage of pixels to cut at high and low intensities to remove outliers</td></tr><tr><td align="center" valign="top">mbins</td><td align="center" valign="top">uint in [1, 256]</td><td align="center" valign="top">64</td><td align="left" valign="top">Number of histogram bins used for the moving image</td></tr><tr><td align="center" valign="top">mkernel</td><td align="center" valign="top">factory</td><td align="center" valign="top">[bspline:d=3]</td><td align="left" valign="top">Spline kernel for moving image parzen hinstogram. For supported plug-ins see <a class="xref" href="SecPlugintype1dsplinekernel.html" title="Plugin type: 1d/splinekernel">Plugin type: 1d/splinekernel</a></td></tr><tr><td align="center" valign="top">rbins</td><td align="center" valign="top">uint in [1, 256]</td><td align="center" valign="top">64</td><td align="left" valign="top">Number of histogram bins used for the reference image</td></tr><tr><td align="center" valign="top">rkernel</td><td align="center" valign="top">factory</td><td align="center" valign="top">[bspline:d=0]</td><td align="left" valign="top">Spline kernel for reference image parzen hinstogram. For supported plug-ins see <a class="xref" href="SecPlugintype1dsplinekernel.html" title="Plugin type: 1d/splinekernel">Plugin type: 1d/splinekernel</a></td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginncc3dimagecost"></a>ncc</h5></div></div></div><p class="plugindescr">normalized cross correlation.. (This plug-in doesn't take parameters)</p></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginngf3dimagecost"></a>ngf</h5></div></div></div><p class="plugindescr">This function evaluates the image similarity based on normalized gradient fields. Given normalized gradient fields $
_S$ of the src image and $
_R$ of the ref image various evaluators are implemented.. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">eval</td><td align="center" valign="top">dict</td><td align="center" valign="top">ds</td><td><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col class="sc0"><col class="sc1"></colgroup><tbody><tr><td colspan="2" align="left" valign="top">plugin subtype (sq, ds,dot,cross)</td></tr><tr><td align="left" valign="top">ds:</td><td align="left" valign="top">square of scaled difference</td></tr><tr><td align="left" valign="top">dot:</td><td align="left" valign="top">scalar product kernel</td></tr><tr><td align="left" valign="top">cross:</td><td align="left" valign="top">cross product kernel</td></tr></tbody></table></div></td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginssd3dimagecost"></a>ssd</h5></div></div></div><p class="plugindescr">3D image cost: sum of squared differences. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">autothresh</td><td align="center" valign="top">float in [0, 1000]</td><td align="center" valign="top">0</td><td align="left" valign="top">Use automatic masking of the moving image by only takeing intensity values into accound that are larger than the given threshold</td></tr><tr><td align="center" valign="top">norm</td><td align="center" valign="top">bool</td><td align="center" valign="top">0</td><td align="left" valign="top">Set whether the metric should be normalized by the number of image pixels</td></tr></tbody></table></div></div><p class="plugin">
</p><p class="plugin">
</p><div class="sect4"><div class="titlepage"><div><div><h5 class="title"><a name="pluginssd-automask3dimagecost"></a>ssd-automask</h5></div></div></div><p class="plugindescr">3D image cost: sum of squared differences, with automasking based on given thresholds. Supported parameters are:</p><div class="informaltable"><table class="informaltable" width="100%" border="1"><colgroup><col width="10%" class="c1"><col width="20%" class="c2"><col width="10%" class="c3"></colgroup><thead><tr><th align="center" valign="top">Name</th><th align="center" valign="top">Type</th><th align="center" valign="top">Default</th><th align="center" valign="top">Description</th></tr></thead><tbody><tr><td align="center" valign="top">rthresh</td><td align="center" valign="top">double</td><td align="center" valign="top">0</td><td align="left" valign="top">Threshold intensity value for reference image</td></tr><tr><td align="center" valign="top">sthresh</td><td align="center" valign="top">double</td><td align="center" valign="top">0</td><td align="left" valign="top">Threshold intensity value for source image</td></tr></tbody></table></div></div><p class="plugin">
</p><h4><a name="idp18186"></a>Plugin consumers:</h4><p class="consumer">
<a class="xref" href="Secmia3dcost.html" title="mia-3dcost">mia-3dcost</a>
<a class="xref" href="Secmia3dcosttranslatedgrad.html" title="mia-3dcost-translatedgrad">mia-3dcost-translatedgrad</a>
<a class="xref" href="Secmia3dforce.html" title="mia-3dforce">mia-3dforce</a>
<a class="xref" href="Secmia3dmany2onenonrigid.html" title="mia-3dmany2one-nonrigid">mia-3dmany2one-nonrigid</a>
<a class="xref" href="Secmia3dnonrigidreg.html" title="mia-3dnonrigidreg">mia-3dnonrigidreg</a>
<a class="xref" href="Secmia3dnonrigidregalt.html" title="mia-3dnonrigidreg-alt">mia-3dnonrigidreg-alt</a>
<a class="xref" href="Secmia3dprealignnonrigid.html" title="mia-3dprealign-nonrigid">mia-3dprealign-nonrigid</a>
<a class="xref" href="Secmia3drigidreg.html" title="mia-3drigidreg">mia-3drigidreg</a>
<a class="xref" href="Secmia3dserialnonrigid.html" title="mia-3dserial-nonrigid">mia-3dserial-nonrigid</a>
<a class="xref" href="SecPlugintype3dimagefullcost.html#pluginimage3dimagefullcost" title="image">image:3dimage/fullcost</a>
</p></div><div class="navfooter"><hr><table width="100%" summary="Navigation footer"><tr><td width="40%" align="left"><a accesskey="p" href="SecPlugintype3dimagecombiner.html">Prev</a> </td><td width="20%" align="center"><a accesskey="u" href="plugins.html">Up</a></td><td width="40%" align="right"> <a accesskey="n" href="SecPlugintype3dimagecreator.html">Next</a></td></tr><tr><td width="40%" align="left" valign="top">Plugin type: 3dimage/combiner </td><td width="20%" align="center"><a accesskey="h" href="index.html">Home</a></td><td width="40%" align="right" valign="top"> Plugin type: 3dimage/creator</td></tr></table></div></body></html>
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