/usr/share/doc/mia-2.4/userref/Secmia3dimagefilterstack.html is in mia-tools-doc 2.4.3-5.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 | <html><head><meta http-equiv="Content-Type" content="text/html; charset=ISO-8859-1"><title>mia-3dimagefilterstack</title><link rel="stylesheet" type="text/css" href="progref.css"><meta name="generator" content="DocBook XSL Stylesheets V1.79.1"><link rel="home" href="index.html" title="Mia Program Reference"><link rel="up" href="SecAnalysisfilteringcombiningandsegmentationof3Dimages.html" title="Analysis, filtering, combining, and segmentation of 3D images"><link rel="prev" href="Secmia3dimagefilter.html" title="mia-3dimagefilter"><link rel="next" href="Secmia3dimagestatisticsinmask.html" title="mia-3dimagestatistics-in-mask"></head><body bgcolor="white" text="black" link="#0000FF" vlink="#840084" alink="#0000FF"><div class="navheader"><table width="100%" summary="Navigation header"><tr><th colspan="3" align="center">mia-3dimagefilterstack</th></tr><tr><td width="20%" align="left"><a accesskey="p" href="Secmia3dimagefilter.html">Prev</a> </td><th width="60%" align="center">Analysis, filtering, combining, and segmentation of 3D images</th><td width="20%" align="right"> <a accesskey="n" href="Secmia3dimagestatisticsinmask.html">Next</a></td></tr></table><hr></div><div class="section"><div class="titlepage"><div><div><h3 class="title"><a name="Secmia3dimagefilterstack"></a>mia-3dimagefilterstack</h3></div></div></div><h4><a name="idp10059"></a>Sysnopis:</h4><div class="cmdsynopsis"><p><code class="command">mia-3dimagefilterstack</code> {-i <em class="replaceable"><code>io</code></em>} {-o <em class="replaceable"><code>io</code></em>} {-t <em class="replaceable"><code>set</code></em>} [
<em class="replaceable"><code>options</code></em>
...] [
<em class="replaceable"><code>
<a class="xref" href="SecPlugintype3dimagefilter.html" title="Plugin type: 3dimage/filter">Plugin type: 3dimage/filter</a>
</code></em>
...]</p></div><h4><a name="idp10073"></a>Description:</h4><p>This program is used to filter and convert a consecutive numbered series gray of scale images. File names must follow the pattern 'dataXXXX.v' (X being digits), i.e. the numbering comes right before the dot. </p><h4><a name="idp10075"></a>Options:</h4><div class="variablelist"><dl class="variablelist compact"><dt><span class="term">-i, --in-file=(input, required); io</span></dt><dd><p>input image(s) to be filtered. For supported file types see <a class="xref" href="SecPlugintype3dimageio.html" title="Plugin type: 3dimage/io">Plugin type: 3dimage/io</a></p></dd><dt><span class="term">-o, --out-file=(output, required); io</span></dt><dd><p>output file name base, numbers are added accorfing to the input file pattern, and the file extension is added according to the 'type' option.. For supported file types see <a class="xref" href="SecPlugintype3dimageio.html" title="Plugin type: 3dimage/io">Plugin type: 3dimage/io</a></p></dd><dt><span class="term">-t, --type=(required); set</span></dt><dd><p>output file typeoutput file type<td align="left" valign="top"> Supported values are:(analyze, datapool, dicom, hdf5, inria, mhd, nifti, vff, vista, vti, vtk, )</td></p></dd></dl></div><h4><a name="idp10092"></a>Help & Info</h4><div class="variablelist"><dl class="variablelist compact"><dt><span class="term">-V, --verbose=warning; dict</span></dt><dd><p>verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:</p><div class="informaltable"><table class="informaltable" border="0"><colgroup><col class="c1"><col class="c2"></colgroup><tbody><tr><td align="left" valign="top">info:</td><td align="left" valign="top">Low level messages</td></tr><tr><td align="left" valign="top">trace:</td><td align="left" valign="top">Function call trace</td></tr><tr><td align="left" valign="top">fail:</td><td align="left" valign="top">Report test failures</td></tr><tr><td align="left" valign="top">warning:</td><td align="left" valign="top">Warnings</td></tr><tr><td align="left" valign="top">error:</td><td align="left" valign="top">Report errors</td></tr><tr><td align="left" valign="top">debug:</td><td align="left" valign="top">Debug output</td></tr><tr><td align="left" valign="top">message:</td><td align="left" valign="top">Normal messages</td></tr><tr><td align="left" valign="top">fatal:</td><td align="left" valign="top">Report only fatal errors</td></tr></tbody></table></div></dd><dt><span class="term">--copyright=(); bool</span></dt><dd><p>print copyright information</p></dd><dt><span class="term">-h, --help=(); bool</span></dt><dd><p>print this help</p></dd><dt><span class="term">-?, --usage=(); bool</span></dt><dd><p>print a short help</p></dd><dt><span class="term">--version=(); bool</span></dt><dd><p>print the version number and exit</p></dd></dl></div><h4><a name="idp10143"></a>Processing</h4><div class="variablelist"><dl class="variablelist compact"><dt><span class="term">--threads=-1; int</span></dt><dd><p>Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).</p></dd></dl></div><h4><a name="idp10149"></a>Example:</h4><p>Run a mean-least-varaiance filter on a series of images that follow the numbering pattern imageXXXX.hdr and store the output in images filteredXXXX.hdr</p><pre class="screen">mia-3dimagefilterstack -i image0000.hdr -o filtered -t hdr mlv:w=2</pre><h4><a name="idp10152"></a>Author(s):</h4><p>Gert Wollny</p></div><div class="navfooter"><hr><table width="100%" summary="Navigation footer"><tr><td width="40%" align="left"><a accesskey="p" href="Secmia3dimagefilter.html">Prev</a> </td><td width="20%" align="center"><a accesskey="u" href="SecAnalysisfilteringcombiningandsegmentationof3Dimages.html">Up</a></td><td width="40%" align="right"> <a accesskey="n" href="Secmia3dimagestatisticsinmask.html">Next</a></td></tr><tr><td width="40%" align="left" valign="top">mia-3dimagefilter </td><td width="20%" align="center"><a accesskey="h" href="index.html">Home</a></td><td width="40%" align="right" valign="top"> mia-3dimagestatistics-in-mask</td></tr></table></div></body></html>
|