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1 2 3 | <html><head><meta http-equiv="Content-Type" content="text/html; charset=ISO-8859-1"><title>mia-3drigidreg</title><link rel="stylesheet" type="text/css" href="progref.css"><meta name="generator" content="DocBook XSL Stylesheets V1.79.1"><link rel="home" href="index.html" title="Mia Program Reference"><link rel="up" href="SecRegistrationComparisonandTransformationof3Dimages.html" title="Registration, Comparison, and Transformation of 3D images"><link rel="prev" href="Secmia3dnonrigidregalt.html" title="mia-3dnonrigidreg-alt"><link rel="next" href="Secmia3dtransform.html" title="mia-3dtransform"></head><body bgcolor="white" text="black" link="#0000FF" vlink="#840084" alink="#0000FF"><div class="navheader"><table width="100%" summary="Navigation header"><tr><th colspan="3" align="center">mia-3drigidreg</th></tr><tr><td width="20%" align="left"><a accesskey="p" href="Secmia3dnonrigidregalt.html">Prev</a> </td><th width="60%" align="center">Registration, Comparison, and Transformation of 3D images</th><td width="20%" align="right"> <a accesskey="n" href="Secmia3dtransform.html">Next</a></td></tr></table><hr></div><div class="section"><div class="titlepage"><div><div><h3 class="title"><a name="Secmia3drigidreg"></a>mia-3drigidreg</h3></div></div></div><h4><a name="idp11866"></a>Sysnopis:</h4><div class="cmdsynopsis"><p><code class="command">mia-3drigidreg</code> {-i <em class="replaceable"><code>io</code></em>} {-r <em class="replaceable"><code>io</code></em>} {-o <em class="replaceable"><code>io</code></em>} [
<em class="replaceable"><code>options</code></em>
...]</p></div><h4><a name="idp11877"></a>Description:</h4><p>This program implements the registration of two gray scale 3D images. The transformation is not penalized, therefore, one should only use translation, rigid, or affine transformations as target and run mia-3dnonrigidreg of nonrigid registration is to be achieved.</p><h4><a name="idp11879"></a>Options:</h4><h4><a name="idp11880"></a>File I/O</h4><div class="variablelist"><dl class="variablelist compact"><dt><span class="term">-i, --in-image=(input, required); io</span></dt><dd><p>test image. For supported file types see <a class="xref" href="SecPlugintype3dimageio.html" title="Plugin type: 3dimage/io">Plugin type: 3dimage/io</a></p></dd><dt><span class="term">-r, --ref-image=(input, required); io</span></dt><dd><p>reference image. For supported file types see <a class="xref" href="SecPlugintype3dimageio.html" title="Plugin type: 3dimage/io">Plugin type: 3dimage/io</a></p></dd><dt><span class="term">-o, --out-image=(output, required); io</span></dt><dd><p>registered output image. For supported file types see <a class="xref" href="SecPlugintype3dimageio.html" title="Plugin type: 3dimage/io">Plugin type: 3dimage/io</a></p></dd><dt><span class="term">-t, --transformation=(output); io</span></dt><dd><p>transformation output file name. For supported file types see <a class="xref" href="SecPlugintype3dtransformio.html" title="Plugin type: 3dtransform/io">Plugin type: 3dtransform/io</a></p></dd><dt><span class="term">-c, --cost=ssd; factory</span></dt><dd><p>cost functioncost function. For supported plug-ins see <a class="xref" href="SecPlugintype3dimagecost.html" title="Plugin type: 3dimage/cost">Plugin type: 3dimage/cost</a></p></dd><dt><span class="term">-l, --levels=3; ulong</span></dt><dd><p>multigrid levelsmultigrid levels</p></dd><dt><span class="term">-O, --optimizer=gsl:opt=simplex,step=1.0; factory</span></dt><dd><p>Optimizer used for minimizationOptimizer used for minimization. For supported plug-ins see <a class="xref" href="SecPlugintypeminimizersinglecost.html" title="Plugin type: minimizer/singlecost">Plugin type: minimizer/singlecost</a></p></dd><dt><span class="term">-f, --transForm=rigid; factory</span></dt><dd><p>transformation typetransformation type. For supported plug-ins see <a class="xref" href="SecPlugintype3dimagetransform.html" title="Plugin type: 3dimage/transform">Plugin type: 3dimage/transform</a></p></dd></dl></div><h4><a name="idp11921"></a>Help & Info</h4><div class="variablelist"><dl class="variablelist compact"><dt><span class="term">-V, --verbose=warning; dict</span></dt><dd><p>verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:</p><div class="informaltable"><table class="informaltable" border="0"><colgroup><col class="c1"><col class="c2"></colgroup><tbody><tr><td align="left" valign="top">info:</td><td align="left" valign="top">Low level messages</td></tr><tr><td align="left" valign="top">trace:</td><td align="left" valign="top">Function call trace</td></tr><tr><td align="left" valign="top">fail:</td><td align="left" valign="top">Report test failures</td></tr><tr><td align="left" valign="top">warning:</td><td align="left" valign="top">Warnings</td></tr><tr><td align="left" valign="top">error:</td><td align="left" valign="top">Report errors</td></tr><tr><td align="left" valign="top">debug:</td><td align="left" valign="top">Debug output</td></tr><tr><td align="left" valign="top">message:</td><td align="left" valign="top">Normal messages</td></tr><tr><td align="left" valign="top">fatal:</td><td align="left" valign="top">Report only fatal errors</td></tr></tbody></table></div></dd><dt><span class="term">--copyright=(); bool</span></dt><dd><p>print copyright information</p></dd><dt><span class="term">-h, --help=(); bool</span></dt><dd><p>print this help</p></dd><dt><span class="term">-?, --usage=(); bool</span></dt><dd><p>print a short help</p></dd><dt><span class="term">--version=(); bool</span></dt><dd><p>print the version number and exit</p></dd></dl></div><h4><a name="idp11972"></a>Processing</h4><div class="variablelist"><dl class="variablelist compact"><dt><span class="term">--threads=-1; int</span></dt><dd><p>Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).</p></dd></dl></div><h4><a name="idp11978"></a>Example:</h4><p>Register image test.v to image ref.v affine and write the registered image to reg.v. Use two multiresolution levels and ssd as cost function.</p><pre class="screen">mia-3drigidreg -i test.v -r ref.v -o reg.v -l 2 -f affine -c ssd</pre><h4><a name="idp11981"></a>Author(s):</h4><p>Gert Wollny</p></div><div class="navfooter"><hr><table width="100%" summary="Navigation footer"><tr><td width="40%" align="left"><a accesskey="p" href="Secmia3dnonrigidregalt.html">Prev</a> </td><td width="20%" align="center"><a accesskey="u" href="SecRegistrationComparisonandTransformationof3Dimages.html">Up</a></td><td width="40%" align="right"> <a accesskey="n" href="Secmia3dtransform.html">Next</a></td></tr><tr><td width="40%" align="left" valign="top">mia-3dnonrigidreg-alt </td><td width="20%" align="center"><a accesskey="h" href="index.html">Home</a></td><td width="40%" align="right" valign="top"> mia-3dtransform</td></tr></table></div></body></html>
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