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1 2 3 | <html><head><meta http-equiv="Content-Type" content="text/html; charset=ISO-8859-1"><title>mia-raw2volume</title><link rel="stylesheet" type="text/css" href="progref.css"><meta name="generator" content="DocBook XSL Stylesheets V1.79.1"><link rel="home" href="index.html" title="Mia Program Reference"><link rel="up" href="SecImageconversion.html" title="Image conversion"><link rel="prev" href="Secmiaraw2image.html" title="mia-raw2image"><link rel="next" href="SecAnalysisfilteringcombiningandsegmentationof2Dimages.html" title="Analysis, filtering, combining, and segmentation of 2D images"></head><body bgcolor="white" text="black" link="#0000FF" vlink="#840084" alink="#0000FF"><div class="navheader"><table width="100%" summary="Navigation header"><tr><th colspan="3" align="center">mia-raw2volume</th></tr><tr><td width="20%" align="left"><a accesskey="p" href="Secmiaraw2image.html">Prev</a> </td><th width="60%" align="center">Image conversion</th><td width="20%" align="right"> <a accesskey="n" href="SecAnalysisfilteringcombiningandsegmentationof2Dimages.html">Next</a></td></tr></table><hr></div><div class="section"><div class="titlepage"><div><div><h3 class="title"><a name="Secmiaraw2volume"></a>mia-raw2volume</h3></div></div></div><h4><a name="idp763"></a>Sysnopis:</h4><div class="cmdsynopsis"><p><code class="command">mia-raw2volume</code> {-i <em class="replaceable"><code>string</code></em>} {-o <em class="replaceable"><code>io</code></em>} {-s <em class="replaceable"><code>3dbounds</code></em>} [
<em class="replaceable"><code>options</code></em>
...]</p></div><h4><a name="idp774"></a>Description:</h4><p>This program is used to convert raw data into 3D images with apropriate metadata.</p><h4><a name="idp776"></a>Options:</h4><div class="variablelist"><dl class="variablelist compact"><dt><span class="term">-i, --in-file=(input, required); string</span></dt><dd><p>input file name</p></dd><dt><span class="term">-o, --out-file=(output, required); io</span></dt><dd><p>output file name. For supported file types see <a class="xref" href="SecPlugintype3dimageio.html" title="Plugin type: 3dimage/io">Plugin type: 3dimage/io</a></p></dd><dt><span class="term">-r, --repn=ubyte; dict</span></dt><dd><p>input pixel type </p><div class="informaltable"><table class="informaltable" border="0"><colgroup><col class="c1"><col class="c2"></colgroup><tbody><tr><td align="left" valign="top">none:</td><td align="left" valign="top">no pixel type defined</td></tr><tr><td align="left" valign="top">float:</td><td align="left" valign="top">floating point 32 bit</td></tr><tr><td align="left" valign="top">sbyte:</td><td align="left" valign="top">signed 8 bit</td></tr><tr><td align="left" valign="top">ulong:</td><td align="left" valign="top">unsigned 64 bit</td></tr><tr><td align="left" valign="top">double:</td><td align="left" valign="top">floating point 64 bit</td></tr><tr><td align="left" valign="top">sint:</td><td align="left" valign="top">signed 32 bit</td></tr><tr><td align="left" valign="top">ushort:</td><td align="left" valign="top">unsigned 16 bit</td></tr><tr><td align="left" valign="top">sshort:</td><td align="left" valign="top">signed 16 bit</td></tr><tr><td align="left" valign="top">uint:</td><td align="left" valign="top">unsigned 32 bit</td></tr><tr><td align="left" valign="top">slong:</td><td align="left" valign="top">signed 64 bit</td></tr><tr><td align="left" valign="top">bit:</td><td align="left" valign="top">binary data</td></tr><tr><td align="left" valign="top">ubyte:</td><td align="left" valign="top">unsigned 8 bit</td></tr></tbody></table></div></dd><dt><span class="term">-b, --big-endian</span></dt><dd><p>input data is big endian</p></dd><dt><span class="term">-f, --scale=[1,1,1]; 3dfvector</span></dt><dd><p>scale of input voxels <FX,FY,FZ>scale of input voxels <FX,FY,FZ></p></dd><dt><span class="term">-k, --skip=0; ulong</span></dt><dd><p>skip number of bytes from beginning of fileskip number of bytes from beginning of file</p></dd><dt><span class="term">-s, --size=(required); 3dbounds</span></dt><dd><p>size of input <NX,NY,NZ>size of input <NX,NY,NZ></p></dd></dl></div><h4><a name="idp848"></a>Help & Info</h4><div class="variablelist"><dl class="variablelist compact"><dt><span class="term">-V, --verbose=warning; dict</span></dt><dd><p>verbosity of output, print messages of given level and higher priorities. Supported priorities starting at lowest level are:</p><div class="informaltable"><table class="informaltable" border="0"><colgroup><col class="c1"><col class="c2"></colgroup><tbody><tr><td align="left" valign="top">info:</td><td align="left" valign="top">Low level messages</td></tr><tr><td align="left" valign="top">trace:</td><td align="left" valign="top">Function call trace</td></tr><tr><td align="left" valign="top">fail:</td><td align="left" valign="top">Report test failures</td></tr><tr><td align="left" valign="top">warning:</td><td align="left" valign="top">Warnings</td></tr><tr><td align="left" valign="top">error:</td><td align="left" valign="top">Report errors</td></tr><tr><td align="left" valign="top">debug:</td><td align="left" valign="top">Debug output</td></tr><tr><td align="left" valign="top">message:</td><td align="left" valign="top">Normal messages</td></tr><tr><td align="left" valign="top">fatal:</td><td align="left" valign="top">Report only fatal errors</td></tr></tbody></table></div></dd><dt><span class="term">--copyright=(); bool</span></dt><dd><p>print copyright information</p></dd><dt><span class="term">-h, --help=(); bool</span></dt><dd><p>print this help</p></dd><dt><span class="term">-?, --usage=(); bool</span></dt><dd><p>print a short help</p></dd><dt><span class="term">--version=(); bool</span></dt><dd><p>print the version number and exit</p></dd></dl></div><h4><a name="idp899"></a>Processing</h4><div class="variablelist"><dl class="variablelist compact"><dt><span class="term">--threads=-1; int</span></dt><dd><p>Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).Maxiumum number of threads to use for processing,This number should be lower or equal to the number of logical processor cores in the machine. (-1: automatic estimation).</p></dd></dl></div><h4><a name="idp905"></a>Example:</h4><p>pixel size of <1.2, 2.3, 3.4> to an Analyze file image.hdr</p><pre class="screen">mia-raw2volume -i data.raw -o image.hdr -s "<10,20,30>" -k "<1.2,2.3,3.4>" -r ushort</pre><h4><a name="idp908"></a>Author(s):</h4><p>Gert Wollny</p></div><div class="navfooter"><hr><table width="100%" summary="Navigation footer"><tr><td width="40%" align="left"><a accesskey="p" href="Secmiaraw2image.html">Prev</a> </td><td width="20%" align="center"><a accesskey="u" href="SecImageconversion.html">Up</a></td><td width="40%" align="right"> <a accesskey="n" href="SecAnalysisfilteringcombiningandsegmentationof2Dimages.html">Next</a></td></tr><tr><td width="40%" align="left" valign="top">mia-raw2image </td><td width="20%" align="center"><a accesskey="h" href="index.html">Home</a></td><td width="40%" align="right" valign="top"> Analysis, filtering, combining, and segmentation of 2D images</td></tr></table></div></body></html>
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