/var/lib/mobyle/programs/hmmstat.xml is in mobyle-programs 5.1.2-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 | <?xml version='1.0' encoding='UTF-8'?>
<!-- XML Authors: Corinne Maufrais -->
<!-- 'Biological Software and Databases' Group, Institut Pasteur, Paris. -->
<!-- Distributed under LGPLv2 License. Please refer to the COPYING.LIB document. -->
<program>
<head>
<name>hmmstat</name>
<xi:include xmlns:xi="http://www.w3.org/2001/XInclude" href="Entities/hmmer_package.xml"/>
<doc>
<title>HMMSTAT</title>
<description>
<text lang="en">Sisplay summary statistics for a profile file</text>
</description>
</doc>
<category>hmm:statistic</category>
<command>hmmstat</command>
</head>
<parameters>
<parameter ismandatory="1" issimple="1">
<name>Name</name>
<prompt lang="en">Name of the HMM profile</prompt>
<type>
<datatype>
<class>HmmProfile</class>
<superclass>AbstractText</superclass>
</datatype>
</type>
<format>
<code proglang="perl">" $value"</code>
<code proglang="python">" "+str(value)</code>
</format>
<argpos>2</argpos>
</parameter>
</parameters>
</program>
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