/usr/bin/PicardCommandLine is in picard-tools 2.8.1+dfsg-1.
This file is owned by root:root, with mode 0o755.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 | #!/bin/sh
set -eu
PRG="$(basename -- "$0")"
case "$PRG" in
picard-tools)
echo 1>&2 'Warning: picard-tools is deprecated and should be replaced by PicardCommandLine'
;;
PicardCommandLine)
;;
*)
set -- "$PRG" "$@"
;;
esac
exec java ${JAVA_OPTIONS-} -jar /usr/share/java/picard.jar "$@"
|