/usr/share/pymol/examples/devel/cgo02.py is in pymol-data 1.8.4.0+dfsg-1.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 | from pymol.cgo import *
from pymol import cmd
import math
# this is an example of creating a cgo object consisting of multiple
# states which form a movie
for a in range(1,62):
# create a state with some unique geometry
obj = [
BEGIN, LINES,
COLOR, 1.0, 1.0, 1.0,
VERTEX, 0.0, 0.0, 0.0,
VERTEX, 1.0, 0.0, 0.0,
VERTEX, 0.0, 0.0, 0.0,
VERTEX, 0.0, 2.0, 0.0,
VERTEX, 0.0, 0.0, 0.0,
VERTEX, 00, 0.0, 3.0,
END,
BEGIN, TRIANGLES,
COLOR, 1.0, 0.2, 0.2,
VERTEX, 0.0, 0.0, 0.0,
VERTEX, math.cos((a-1)/10.0), math.sin((a-1)/10.0), 2.0,
VERTEX, 0.0, 0.0, 2.0,
END
]
# load state into PyMOL
cmd.load_cgo(obj,'cgo02',a)
# this moves the rear clipping plane back a bit
cmd.clip('far',-5)
# now, start the movie
cmd.mplay()
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