About

This package is 834.1 KB. It is available at http://ftp.debian.org/debian/pool/main/p/python-pysam/python-pysam-tests_0.10.0+ds-2_all.deb .

View its full control file here: debian/control.

Description

interface for the SAM/BAM sequence alignment and mapping format (test data)

Relations

This package does not depend on any other package.

This package does not recommend any other package.

This package does not suggest any other package.

This package does not conflict with any other package.

Package Contents

This package is indexed.

python-pysam-tests 0.10.0+ds-2 is in debian - stretch / main. This package's architecture is: architectureless.

File Mime Type Owner Mode Size
/usr/ root:root 0o755
/usr/share/ root:root 0o755
/usr/share/doc/ root:root 0o755
/usr/share/doc/python-pysam/ root:root 0o755
/usr/share/doc/python-pysam-tests/ root:root 0o755
/usr/share/doc/python-pysam/tests/ root:root 0o755
/usr/share/doc/python-pysam/tests/00README.txt text/plain root:root 0o644 1.1 KB
/usr/share/doc/python-pysam/tests/AlignedSegment_test.py.gz application/gzip root:root 0o644 4.6 KB
/usr/share/doc/python-pysam/tests/AlignmentFile_test.py.gz application/gzip root:root 0o644 15.9 KB
/usr/share/doc/python-pysam/tests/cbcf_data/ root:root 0o755
/usr/share/doc/python-pysam/tests/cbcf_data/example_empty.vcf application/x-empty root:root 0o644 0 bytes
/usr/share/doc/python-pysam/tests/cbcf_data/example_vcf40.vcf text/plain root:root 0o644 1.5 KB
/usr/share/doc/python-pysam/tests/cbcf_data/example_vcf42_only_header.vcf text/plain root:root 0o644 1.0 KB
/usr/share/doc/python-pysam/tests/cbcf_data/example_vcf42.vcf text/plain root:root 0o644 1.5 KB
/usr/share/doc/python-pysam/tests/cbcf_data/example_vcf42_withcontigs.vcf text/plain root:root 0o644 1.6 KB
/usr/share/doc/python-pysam/tests/cbcf_data/Makefile text/x-makefile root:root 0o644 414 bytes
/usr/share/doc/python-pysam/tests/cbcf_data/missing_genotypes.vcf text/plain root:root 0o644 239 bytes
/usr/share/doc/python-pysam-tests/changelog.Debian.gz application/gzip root:root 0o644 2.2 KB
/usr/share/doc/python-pysam/tests/compile_test.py text/x-c++ root:root 0o644 928 bytes
/usr/share/doc/python-pysam/tests/_compile_test.pyx text/x-python root:root 0o644 619 bytes
/usr/share/doc/python-pysam/tests/_compile_test.pyxbld text/x-python root:root 0o644 319 bytes
/usr/share/doc/python-pysam-tests/copyright text/plain root:root 0o644 6.7 KB
/usr/share/doc/python-pysam/tests/_cython_flagstat.pyx text/x-python root:root 0o644 537 bytes
/usr/share/doc/python-pysam/tests/_cython_flagstat.pyxbld text/x-python root:root 0o644 349 bytes
/usr/share/doc/python-pysam/tests/faidx_test.py.gz application/gzip root:root 0o644 2.7 KB
/usr/share/doc/python-pysam/tests/pysam_data/ root:root 0o755
/usr/share/doc/python-pysam/tests/pysam_data/ex10.sam text/plain root:root 0o644 1.7 KB
/usr/share/doc/python-pysam/tests/pysam_data/ex1.bed text/plain root:root 0o644 26 bytes
/usr/share/doc/python-pysam/tests/pysam_data/ex1.fa text/plain root:root 0o644 3.1 KB
/usr/share/doc/python-pysam/tests/pysam_data/ex1.sam.gz application/gzip root:root 0o644 110.5 KB
/usr/share/doc/python-pysam/tests/pysam_data/ex1.vcf.gz application/gzip root:root 0o644 16.6 KB
/usr/share/doc/python-pysam/tests/pysam_data/ex1.vcf.gz.tbi.gz application/gzip root:root 0o644 3.8 KB
/usr/share/doc/python-pysam/tests/pysam_data/ex3.sam text/plain root:root 0o644 869 bytes
/usr/share/doc/python-pysam/tests/pysam_data/ex4.sam text/plain root:root 0o644 460 bytes
/usr/share/doc/python-pysam/tests/pysam_data/ex5.sam text/plain root:root 0o644 277 bytes
/usr/share/doc/python-pysam/tests/pysam_data/ex6.sam text/plain root:root 0o644 332 bytes
/usr/share/doc/python-pysam/tests/pysam_data/ex7.sam.donottest text/plain root:root 0o644 311 bytes
/usr/share/doc/python-pysam/tests/pysam_data/ex8.sam text/plain root:root 0o644 516 bytes
/usr/share/doc/python-pysam/tests/pysam_data/ex9_fail.sam.gz application/gzip root:root 0o644 5.2 KB
/usr/share/doc/python-pysam/tests/pysam_data/ex9_nofail.sam.gz application/gzip root:root 0o644 5.2 KB
/usr/share/doc/python-pysam/tests/pysam_data/example_aligned_pairs.sam.gz application/gzip root:root 0o644 4.5 KB
/usr/share/doc/python-pysam/tests/pysam_data/example_btag.sam text/plain root:root 0o644 2.9 KB
/usr/share/doc/python-pysam/tests/pysam_data/example_empty_header.sam.gz application/gzip root:root 0o644 3.9 KB
/usr/share/doc/python-pysam/tests/pysam_data/example_empty_with_header.sam text/plain root:root 0o644 26 bytes
/usr/share/doc/python-pysam/tests/pysam_data/example_unmapped_reads_no_sq.sam text/plain root:root 0o644 239 bytes
/usr/share/doc/python-pysam/tests/pysam_data/example_user_header.sam text/plain root:root 0o644 368 bytes
/usr/share/doc/python-pysam/tests/pysam_data/ex_spliced.sam.gz application/gzip root:root 0o644 6.0 KB
/usr/share/doc/python-pysam/tests/pysam_data/faidx_empty_seq.fq text/plain root:root 0o644 1.1 KB
/usr/share/doc/python-pysam/tests/pysam_data/faidx_ex1.fa.gz application/gzip root:root 0o644 33.1 KB
/usr/share/doc/python-pysam/tests/pysam_data/faidx_ex1.fq.gz application/gzip root:root 0o644 68.4 KB
/usr/share/doc/python-pysam/tests/pysam_data/issue100.sam.gz application/gzip root:root 0o644 3.9 KB
/usr/share/doc/python-pysam/tests/pysam_data/Makefile text/x-makefile root:root 0o644 1.9 KB
/usr/share/doc/python-pysam/tests/pysam_data/rg_with_tab.sam.gz application/gzip root:root 0o644 107.1 KB
/usr/share/doc/python-pysam/tests/pysam_data/softclip.sam text/plain root:root 0o644 237 bytes
/usr/share/doc/python-pysam/tests/pysam_data/tag_bug.sam text/plain root:root 0o644 540 bytes
/usr/share/doc/python-pysam/tests/pysam_data/test.gtf text/plain root:root 0o644 1.7 KB
/usr/share/doc/python-pysam/tests/pysam_data/test_mapped_unmapped.sam text/plain root:root 0o644 1.8 KB
/usr/share/doc/python-pysam/tests/pysam_data/test_query_position.sam text/plain root:root 0o644 559 bytes
/usr/share/doc/python-pysam/tests/pysam_data/test_unaligned.sam text/plain root:root 0o644 1013 bytes
/usr/share/doc/python-pysam-tests/README.Debian text/plain root:root 0o644 306 bytes
/usr/share/doc/python-pysam/tests/refactoring.pl text/plain root:root 0o644 1.8 KB
/usr/share/doc/python-pysam/tests/refactoring.txt.gz application/gzip root:root 0o644 3.1 KB
/usr/share/doc/python-pysam-tests/run-nose3-tests text/x-shellscript root:root 0o644 201 bytes
/usr/share/doc/python-pysam-tests/run-nose-tests text/x-shellscript root:root 0o644 565 bytes
/usr/share/doc/python-pysam/tests/SamFile_test.py.gz application/gzip root:root 0o644 13.0 KB
/usr/share/doc/python-pysam/tests/samtools_test.py.gz application/gzip root:root 0o644 3.6 KB
/usr/share/doc/python-pysam/tests/StreamFiledescriptors_test.py text/x-c++ root:root 0o644 2.5 KB
/usr/share/doc/python-pysam/tests/tabix_data/ root:root 0o755
/usr/share/doc/python-pysam/tests/tabix_data/empty.bed.gz application/gzip root:root 0o644 28 bytes
/usr/share/doc/python-pysam/tests/tabix_data/empty.bed.gz.tbi application/gzip root:root 0o644 75 bytes
/usr/share/doc/python-pysam/tests/tabix_data/example_0v23.bed.gz application/gzip root:root 0o644 819 bytes
/usr/share/doc/python-pysam/tests/tabix_data/example_0v23.bed.gz.tbi application/gzip root:root 0o644 244 bytes
/usr/share/doc/python-pysam/tests/tabix_data/example_0v23.vcf.gz application/gzip root:root 0o644 328 bytes
/usr/share/doc/python-pysam/tests/tabix_data/example_0v23.vcf.gz.tbi application/gzip root:root 0o644 155 bytes
/usr/share/doc/python-pysam/tests/tabix_data/example_0v26.bed.gz application/gzip root:root 0o644 819 bytes
/usr/share/doc/python-pysam/tests/tabix_data/example_0v26.bed.gz.tbi application/gzip root:root 0o644 244 bytes
/usr/share/doc/python-pysam/tests/tabix_data/example_0v26.vcf.gz application/gzip root:root 0o644 328 bytes
/usr/share/doc/python-pysam/tests/tabix_data/example_0v26.vcf.gz.tbi application/gzip root:root 0o644 155 bytes
/usr/share/doc/python-pysam/tests/tabix_data/example_badcomments.bed.gz application/gzip root:root 0o644 879 bytes
/usr/share/doc/python-pysam/tests/tabix_data/example_badcomments.bed.gz.tbi application/gzip root:root 0o644 194 bytes
/usr/share/doc/python-pysam/tests/tabix_data/example_badcomments.gtf.gz application/gzip root:root 0o644 3.7 KB
/usr/share/doc/python-pysam/tests/tabix_data/example_badcomments.gtf.gz.tbi application/gzip root:root 0o644 198 bytes
/usr/share/doc/python-pysam/tests/tabix_data/example_badcomments.sam.gz application/gzip root:root 0o644 398 bytes
/usr/share/doc/python-pysam/tests/tabix_data/example_badcomments.sam.gz.tbi application/gzip root:root 0o644 128 bytes
/usr/share/doc/python-pysam/tests/tabix_data/example_badcomments.vcf.gz application/gzip root:root 0o644 753 bytes
/usr/share/doc/python-pysam/tests/tabix_data/example_badcomments.vcf.gz.tbi application/gzip root:root 0o644 186 bytes
/usr/share/doc/python-pysam/tests/tabix_data/example.bed.gz application/gzip root:root 0o644 819 bytes
/usr/share/doc/python-pysam/tests/tabix_data/example.bed.gz.tbi application/gzip root:root 0o644 192 bytes
/usr/share/doc/python-pysam/tests/tabix_data/example_comments.bed.gz application/gzip root:root 0o644 849 bytes
/usr/share/doc/python-pysam/tests/tabix_data/example_comments.bed.gz.tbi application/gzip root:root 0o644 194 bytes
/usr/share/doc/python-pysam/tests/tabix_data/example_comments.gtf.gz application/gzip root:root 0o644 3.7 KB
/usr/share/doc/python-pysam/tests/tabix_data/example_comments.gtf.gz.tbi application/gzip root:root 0o644 198 bytes
/usr/share/doc/python-pysam/tests/tabix_data/example_comments.sam.gz application/gzip root:root 0o644 398 bytes
/usr/share/doc/python-pysam/tests/tabix_data/example_comments.sam.gz.tbi application/gzip root:root 0o644 128 bytes
/usr/share/doc/python-pysam/tests/tabix_data/example_comments.vcf.gz application/gzip root:root 0o644 753 bytes
/usr/share/doc/python-pysam/tests/tabix_data/example_comments.vcf.gz.tbi application/gzip root:root 0o644 186 bytes
/usr/share/doc/python-pysam/tests/tabix_data/example.gtf.gz application/gzip root:root 0o644 3.7 KB
/usr/share/doc/python-pysam/tests/tabix_data/example.gtf.gz.tbi application/gzip root:root 0o644 196 bytes
/usr/share/doc/python-pysam/tests/tabix_data/example.sam.gz application/gzip root:root 0o644 398 bytes
/usr/share/doc/python-pysam/tests/tabix_data/example.sam.gz.tbi application/gzip root:root 0o644 128 bytes
/usr/share/doc/python-pysam/tests/tabix_data/example_unicode.vcf text/plain root:root 0o644 1.5 KB
/usr/share/doc/python-pysam/tests/tabix_data/example.vcf40 text/plain root:root 0o644 1.5 KB
/usr/share/doc/python-pysam/tests/tabix_data/example.vcf.gz application/gzip root:root 0o644 328 bytes
/usr/share/doc/python-pysam/tests/tabix_data/example.vcf.gz.tbi application/gzip root:root 0o644 182 bytes
/usr/share/doc/python-pysam/tests/tabix_data/gtf_toofew_fields.gtf.gz application/gzip root:root 0o644 400 bytes
/usr/share/doc/python-pysam/tests/tabix_data/gtf_toomany_fields.gtf.gz application/gzip root:root 0o644 400 bytes
/usr/share/doc/python-pysam/tests/tabix_data/gtf_wrong_fields.gtf.gz application/gzip root:root 0o644 400 bytes
/usr/share/doc/python-pysam/tests/tabix_data/vcf/ root:root 0o755
/usr/share/doc/python-pysam/tests/tabix_data/vcf/10.vcf.gz application/gzip root:root 0o644 3.6 KB
/usr/share/doc/python-pysam/tests/tabix_data/vcf/11.vcf.gz application/gzip root:root 0o644 13.4 KB
/usr/share/doc/python-pysam/tests/tabix_data/vcf/12.vcf.gz application/gzip root:root 0o644 18.1 KB
/usr/share/doc/python-pysam/tests/tabix_data/vcf/13.vcf.gz application/gzip root:root 0o644 17.1 KB
/usr/share/doc/python-pysam/tests/tabix_data/vcf/15.vcf.gz application/gzip root:root 0o644 19.1 KB
/usr/share/doc/python-pysam/tests/tabix_data/vcf/16.vcf.gz application/gzip root:root 0o644 49.8 KB
/usr/share/doc/python-pysam/tests/tabix_data/vcf/18.vcf.gz application/gzip root:root 0o644 18.1 KB
/usr/share/doc/python-pysam/tests/tabix_data/vcf/20.vcf.gz application/gzip root:root 0o644 2.4 KB
/usr/share/doc/python-pysam/tests/tabix_data/vcf/21.vcf.gz application/gzip root:root 0o644 2.8 KB
/usr/share/doc/python-pysam/tests/tabix_data/vcf/22.vcf.gz application/gzip root:root 0o644 56.7 KB
/usr/share/doc/python-pysam/tests/tabix_data/vcf/23.vcf.gz application/gzip root:root 0o644 38.4 KB
/usr/share/doc/python-pysam/tests/tabix_data/vcf/24.vcf.gz application/gzip root:root 0o644 9.0 KB
/usr/share/doc/python-pysam/tests/tabix_data/vcf/2.vcf.gz application/gzip root:root 0o644 45.3 KB
/usr/share/doc/python-pysam/tests/tabix_data/vcf/3.vcf.gz application/gzip root:root 0o644 23.7 KB
/usr/share/doc/python-pysam/tests/tabix_data/vcf/4.vcf.gz application/gzip root:root 0o644 12.1 KB
/usr/share/doc/python-pysam/tests/tabix_data/vcf/5.vcf.gz application/gzip root:root 0o644 34.6 KB
/usr/share/doc/python-pysam/tests/tabix_data/vcf/6.vcf.gz application/gzip root:root 0o644 17.8 KB
/usr/share/doc/python-pysam/tests/tabix_data/vcf/7.vcf.gz application/gzip root:root 0o644 11.6 KB
/usr/share/doc/python-pysam/tests/tabix_data/vcf/8.vcf.gz application/gzip root:root 0o644 3.6 KB
/usr/share/doc/python-pysam/tests/tabix_data/vcf/9.vcf.gz application/gzip root:root 0o644 18.1 KB
/usr/share/doc/python-pysam/tests/tabix_data/vcf/issue85.vcf text/plain root:root 0o644 2.4 KB
/usr/share/doc/python-pysam/tests/tabix_data/vcf/README.txt text/plain root:root 0o644 338 bytes
/usr/share/doc/python-pysam/tests/tabix_data/vcf/vcf_v42.vcf text/plain root:root 0o644 1.7 KB
/usr/share/doc/python-pysam/tests/tabix_test.py.gz application/gzip root:root 0o644 7.5 KB
/usr/share/doc/python-pysam/tests/test_samtools_python.py text/plain root:root 0o644 1.6 KB
/usr/share/doc/python-pysam/tests/TestUtils.py.gz application/gzip root:root 0o644 1.6 KB
/usr/share/doc/python-pysam/tests/VariantFile_test.py.gz application/gzip root:root 0o644 3.3 KB
/usr/share/lintian/ root:root 0o755
/usr/share/lintian/overrides/ root:root 0o755
/usr/share/lintian/overrides/python-pysam-tests text/plain root:root 0o644 382 bytes