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/usr/bin/sage3d is in python-sagenb 0.13+ds1-2.

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#!/bin/bash

java -classpath \
/usr/share/java/j3dcore.jar:\
/usr/share/java/vecmath.jar:\
/usr/share/java/j3dutils.jar:\
/usr/lib/python2.7/dist-packages/sagenb/data/sage3d/lib/sage3d.jar \
org.sagemath.sage3d.ObjectViewerApp "$@"