/usr/bin/sage3d is in python-sagenb 0.13+ds1-2.
This file is owned by root:root, with mode 0o755.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 | #!/bin/bash
java -classpath \
/usr/share/java/j3dcore.jar:\
/usr/share/java/vecmath.jar:\
/usr/share/java/j3dutils.jar:\
/usr/lib/python2.7/dist-packages/sagenb/data/sage3d/lib/sage3d.jar \
org.sagemath.sage3d.ObjectViewerApp "$@"
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