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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118 119 120 121 122 123 124 125 126 127 128 129 130 131 132 133 134 135 136 137 138 139 140 141 142 143 144 145 146 147 148 149 150 151 152 153 154 155 156 157 158 159 160 161 162 163 164 165 166 167 168 169 170 171 172 173 174 175 176 177 178 179 180 181 182 183 184 185 186 187 188 189 190 191 192 193 194 195 196 197 198 199 200 201 202 203 204 205 206 207 208 209 210 211 212 213 214 215 216 217 218 219 220 221 222 223 224 225 226 227 228 229 230 231 232 233 234 235 236 237 238 239 240 241 242 243 244 245 246 247 248 249 250 251 252 253 254 255 256 257 258 259 260 261 262 263 264 265 266 267 268 269 270 271 272 273 274 275 276 277 278 279 280 281 282 283 284 285 286 287 288 289 290 291 292 293 | Query d1ea0a1 b.80.4.1 (A:1203-1472) Alpha subunit of glutamate synthase, C-terminal domain {Azospirillum brasilense [TaxId: 192]}
Match_columns 270
No_of_seqs 194 out of 1507
Neff 5.2
Searched_HMMs 2936
Date Thu Jul 15 08:34:22 2010
Command ./hhsearch -i /ebio/abt1/kopec/projects/hhpred_on_cluster/split_fastas/d1ea0a1.hhm -d /ebio/abt1/kopec/projects/hhpred_on_cluster/astral_scop70_all_beta_only_v1.75_hhpred_database.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ea0a1 b.80.4.1 (A:1203-1472) 100.0 0 0 850.5 17.9 270 1-270 1-270 (270)
2 d1ofda1 b.80.4.1 (A:1240-1507) 100.0 0 0 758.3 23.2 263 3-266 2-266 (268)
3 d1ofda1 b.80.4.1 (A:1240-1507) 97.3 6.5E-05 2.2E-08 62.1 8.4 104 61-178 81-197 (268)
4 d1ea0a1 b.80.4.1 (A:1203-1472) 94.4 0.0042 1.4E-06 50.2 5.0 68 128-196 97-177 (270)
5 d1g3pa1 b.37.1.1 (A:1-65) N-te 35.1 1.2 0.00041 27.0 0.9 16 161-176 34-49 (65)
6 d1jv2a4 b.69.8.1 (A:1-438) Int 18.5 43 0.015 24.2 8.6 6 188-193 313-318 (438)
7 d1qvca_ b.40.4.3 (A:) ssDNA-bi 9.2 26 0.0089 21.8 3.5 32 60-91 53-84 (145)
8 d1yfba1 b.129.1.3 (A:3-53) Tra 9.1 13 0.0045 20.5 1.4 13 254-266 16-28 (51)
9 d1hf2a1 b.80.3.1 (A:100-206) C 8.4 20 0.0068 22.2 2.4 27 162-188 30-56 (107)
10 d1v8qa_ b.84.4.1 (A:) Ribosoma 8.2 30 0.01 19.6 3.1 43 95-138 9-52 (66)
10000 d1v8qa_ b.84.4.1 (A:) Riboso 8.2 30 0.01 19.6 3.1 43 95-138 9-52 (66)
No 1
>d1ea0a1 b.80.4.1 (A:1203-1472) Alpha subunit of glutamate synthase, C-terminal domain {Azospirillum brasilense [TaxId: 192]}
Probab=100.00 E-value=0 Score=850.47 Aligned_cols=270 Identities=100% Similarity=1.461 Sum_probs=268.3
Q ss_dssp CCCCCCCCTHHHHHHHTHHHHHHCCCEEEEEEECTTCCSTTHHHHHHHHHHTTTTSSCTTSEEEEEEEEECSSTTTTCBT
Q ss_pred CCCCchhHHHHHHHHHHHHHHHcCCcEEEEEEEEecccchhHHHHHHHHHHhCcccCCCCcEEEEEecchhhhhhhhcCC
Q d1ea0a1 1 GRNEVPDTLDARIVADARPLFEEGEKMQLAYNARNTQRAIGTRLSSMVTRKFGMFGLQPGHITIRLRGTAGQSLGAFAVQ 80 (270)
Q Consensus 1 ~rh~~~~~LD~~li~~~~~ai~~~~~~~~~~~I~NtdRsvGa~Lsg~Iak~~G~~gL~~~~I~i~~~G~aGqsfgaf~~~ 80 (270)
|||++|++||++|+++++++|+++++++++|+|+||||||||||||+|+|+||++|||+++|+|+|+||||||||||+++
T Consensus 1 ~rh~~~~~LD~~li~~~~~ai~~~~~~~~~~~I~NtdRsvGa~Lsg~Iak~~G~~gL~~~~I~i~~~G~aGqsfgaf~~~ 80 (270)
T d1ea0a1 1 GRNEVPDTLDARIVADARPLFEEGEKMQLAYNARNTQRAIGTRLSSMVTRKFGMFGLQPGHITIRLRGTAGQSLGAFAVQ 80 (270)
T ss_dssp CCCCCCCCTHHHHHHHTHHHHHHCCCEEEEEEECTTCCSTTHHHHHHHHHHTTTTSSCTTSEEEEEEEEECSSTTTTCBT
T ss_pred CCCCchhHHHHHHHHHHHHHHHcCCcEEEEEEEEecccchhHHHHHHHHHHhCcccCCCCcEEEEEecchhhhhhhhcCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_dssp TEEEEEEEEECSCTTTTCEEEEEEEECCTTCCCCGGGSEEECSSTTTTCCEEEEEESSEECTTTTTTCEEEEEEESCBCS
Q ss_pred CcEEEEEccchhhhhhhccccceEEEcCccccccccccccccceeeeeeccceEEEcCCcccchhehhccceEEeccccc
Q d1ea0a1 81 GIKLEVMGDANDYVGKGLSGGTIVVRPTTSSPLETNKNTIIGNTVLYGATAGKLFAAGQAGERFAVRNSGATVVVEGCGS 160 (270)
Q Consensus 81 G~~l~~~G~anD~vgk~~~gg~i~i~~~~~~~~~~~~n~i~Gn~~lYGAt~G~~~~~G~aGeRf~VRnSGa~aVveG~Gd 160 (270)
||+|+|+|+||||||||||||+|+|+||+++++.+++|+|+|||||||||+|++|++|+||||||||||||+|||||+||
T Consensus 81 G~~l~~~G~anD~vgk~~~gg~i~i~~~~~~~~~~~~n~i~Gn~~lYGAt~G~~~~~G~aGeRf~VRnSGa~aVveG~Gd 160 (270)
T d1ea0a1 81 GIKLEVMGDANDYVGKGLSGGTIVVRPTTSSPLETNKNTIIGNTVLYGATAGKLFAAGQAGERFAVRNSGATVVVEGCGS 160 (270)
T ss_dssp TEEEEEEEEECSCTTTTCEEEEEEEECCTTCCCCGGGSEEECSSTTTTCCEEEEEESSEECTTTTTTCEEEEEEESCBCS
T ss_pred CcEEEEEccchhhhhhhccccceEEEcCccccccccccccccceeeeeeccceEEEcCCcccchhehhccceEEeccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_dssp STTTTCCEEEECCSSCBCSSBTTTCCSSEECCCCTTSCHHHHBCGGGEEEECCCSTTHHHHHHHHHHHHHHHHCCHHHHH
Q ss_pred cccceecCCEEEEecCCCcchhcccccceEEEeccccchhhhcCccceeeecCCCHHHHHHHHHHHHHHHHHHCCHHHHH
Q d1ea0a1 161 NGCEYMTGGTAVILGRVGDNFAAGMTGGMAYVYDLDDSLPLYINDESVIFQRIEVGHYESQLKHLIEEHVTETQSRFAAE 240 (270)
Q Consensus 161 h~cEYMtgG~vvvLG~~G~nfgAGMsGG~ayv~d~~~~f~~~vN~e~V~l~~i~~~~~e~~Lk~LIe~H~~~TgS~~Ak~ 240 (270)
|+|||||||+|||||++|+|||||||||+|||||++++|+++||+|||+++++++++|+++||+||++|+++|+|++|++
T Consensus 161 h~cEYMtgG~vvvLG~~G~nfgAGMsGG~ayv~d~~~~f~~~vN~e~V~l~~i~~~~~e~~Lk~LIe~H~~~TgS~~Ak~ 240 (270)
T d1ea0a1 161 NGCEYMTGGTAVILGRVGDNFAAGMTGGMAYVYDLDDSLPLYINDESVIFQRIEVGHYESQLKHLIEEHVTETQSRFAAE 240 (270)
T ss_dssp STTTTCCEEEECCSSCBCSSBTTTCCSSEECCCCTTSCHHHHBCGGGEEEECCCSTTHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred cccceecCCEEEEecCCCcchhcccccceEEEeccccchhhhcCccceeeecCCCHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_dssp HHHTHHHHHTTCCEEEEGGGGGGCSSCSCC
Q ss_pred HHHhHHHHhCcEEEEeCHHHHHhhccCCCC
Q d1ea0a1 241 ILNDWAREVTKFWQVVPKEMLNRLEVPVHL 270 (270)
Q Consensus 241 IL~nWd~~~~~FvkViPkey~~~Le~pi~~ 270 (270)
||+||++++++||||+|+||+++||+||||
T Consensus 241 IL~nWd~~~~~FvkViPkey~~~Le~pi~~ 270 (270)
T d1ea0a1 241 ILNDWAREVTKFWQVVPKEMLNRLEVPVHL 270 (270)
T ss_dssp HHHTHHHHHTTCCEEEEGGGGGGCSSCSCC
T ss_pred HHHhHHHHhCcEEEEeCHHHHHhhccCCCC
Confidence 999999999999999999999999999997
No 2
>d1ofda1 b.80.4.1 (A:1240-1507) Alpha subunit of glutamate synthase, C-terminal domain {Synechocystis sp. [TaxId: 1143]}
Probab=100.00 E-value=0 Score=758.32 Aligned_cols=263 Identities=47% Similarity=0.780 Sum_probs=257.9
Q ss_dssp CCCCCCTHHHHHHH--THHHHHHCCCEEEEEEECTTCCSTTHHHHHHHHHHTTTTSSCTTSEEEEEEEEECSSTTTTCBT
Q ss_pred CCchhHHHHHHHHH--HHHHHHcCCcEEEEEEEEecccchhHHHHHHHHHHhCcccCCCCcEEEEEecchhhhhhhhcCC
Q d1ea0a1 3 NEVPDTLDARIVAD--ARPLFEEGEKMQLAYNARNTQRAIGTRLSSMVTRKFGMFGLQPGHITIRLRGTAGQSLGAFAVQ 80 (270)
Q Consensus 3 h~~~~~LD~~li~~--~~~ai~~~~~~~~~~~I~NtdRsvGa~Lsg~Iak~~G~~gL~~~~I~i~~~G~aGqsfgaf~~~ 80 (270)
|.++.+||+++|.+ ++++|+++++++++++|+|+|||||||||++|+++||+.||| ++|+|+|+||||||||||+++
T Consensus 2 h~~~~~lD~~~l~~~~~~~ai~~~~~~~~~~~I~N~dRsvGa~Lsg~Ia~~~g~~gl~-~~i~i~~~G~aGqsfgaf~~~ 80 (268)
T d1ofda1 2 HSNGPVLDDDILADPDIQEAINHQTTATKTYRLVNTDRTVGTRLSGAIAKKYGNNGFE-GNITLNFQGAAGQSFGAFNLD 80 (268)
T ss_dssp CCCCSCHHHHHHHSHHHHHHHHHCCEEEEEEEECTTCCSTTHHHHHHHHHHHTTTCCC-CEEEEEEEEEECTTTTTTCCT
T ss_pred CCCchhhhHHHHhHHHHHHHHHcCCcEEEEEEEEecCcchhHHHHHHHHHHhccccCC-CCEEEEEecCcchhhHhhCCC
Confidence 78889999999984 589999999999999999999999999999999999999995 899999999999999999999
Q ss_dssp TEEEEEEEEECSCTTTTCEEEEEEEECCTTCCCCGGGSEEECSSTTTTCCEEEEEESSEECTTTTTTCEEEEEEESCBCS
Q ss_pred CcEEEEEccchhhhhhhccccceEEEcCccccccccccccccceeeeeeccceEEEcCCcccchhehhccceEEeccccc
Q d1ea0a1 81 GIKLEVMGDANDYVGKGLSGGTIVVRPTTSSPLETNKNTIIGNTVLYGATAGKLFAAGQAGERFAVRNSGATVVVEGCGS 160 (270)
Q Consensus 81 G~~l~~~G~anD~vgk~~~gg~i~i~~~~~~~~~~~~n~i~Gn~~lYGAt~G~~~~~G~aGeRf~VRnSGa~aVveG~Gd 160 (270)
|++|+|+|+|||||||||+||+|+|+||+++++.+++|+|+|||||||||+|++|++|+||||||||||||+|||||+||
T Consensus 81 G~~l~~~G~anD~vgk~~~gg~i~v~~~~~~~~~~~~~~i~Gn~~~yGAt~G~~~~~g~ag~Rf~VRnSGa~aVveG~Gd 160 (268)
T d1ofda1 81 GMTLHLQGEANDYVGKGMNGGEIVIVPHPQASFAPEDNVIIGNTCLYGATGGNLYANGRAGERFAVRNSVGKAVIEGAGD 160 (268)
T ss_dssp TEEEEEEEEECSCTTTTCCSSEEEEECCTTCCSCGGGSBCSCSSTTTTCCSCEEEESSBCCSSTTTTCSSCEEEESCCCS
T ss_pred CCEEEEEeccchhhhhhccCceeEEEcCccccccccccccccccceeeeccceEEEcCCccceeeeeccccEEEEccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_dssp STTTTCCEEEECCSSCBCSSBTTTCCSSEECCCCTTSCHHHHBCGGGEEEECCCSTTHHHHHHHHHHHHHHHHCCHHHHH
Q ss_pred cccceecCCEEEEecCCCcchhcccccceEEEeccccchhhhcCccceeeecCCCHHHHHHHHHHHHHHHHHHCCHHHHH
Q d1ea0a1 161 NGCEYMTGGTAVILGRVGDNFAAGMTGGMAYVYDLDDSLPLYINDESVIFQRIEVGHYESQLKHLIEEHVTETQSRFAAE 240 (270)
Q Consensus 161 h~cEYMtgG~vvvLG~~G~nfgAGMsGG~ayv~d~~~~f~~~vN~e~V~l~~i~~~~~e~~Lk~LIe~H~~~TgS~~Ak~ 240 (270)
|+|||||||+|||||++|+|||||||||+||||||+++|++++|+|||+++++++++|+++||+||++|+++|+|.+|++
T Consensus 161 ~~~EYMtgG~vvvlG~~G~nfgaGMtGG~ayvyD~~~~f~~~iN~e~V~l~~i~~~~d~~~Lk~LI~~H~~~TgS~~Ak~ 240 (268)
T d1ofda1 161 HCCEYMTGGVIVVLGPVGRNVGAGMTGGLAYFLDEVGDLPEKINPEIITLQRITASKGEEQLKSLITAHVEHTGSPKGKA 240 (268)
T ss_dssp STTTTCEEEEEEECSCCCSSBTTTCCEEEEEEECSSSCHHHHBCTTTCEEECCCCHHHHHHHHHHHHHHHHHHCCHHHHH
T ss_pred cccccccCCEEEEEecCCcccccceecceEEEeccccchhhhcCcceeEEEecCcHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_dssp HHHTHHHHHTTCCEEEEGGGGGGCSS
Q ss_pred HHHhHHHHhCcEEEEeCHHHHHhhcc
Q d1ea0a1 241 ILNDWAREVTKFWQVVPKEMLNRLEV 266 (270)
Q Consensus 241 IL~nWd~~~~~FvkViPkey~~~Le~ 266 (270)
||+||++++++||||+|+||+++||.
T Consensus 241 IL~nW~~~~~~FvKVvPk~yk~~LE~ 266 (268)
T d1ofda1 241 ILANWSDYLGKFWQAVPPSEKDSPEA 266 (268)
T ss_dssp HHHTHHHHHTTEEEEECTTSTTSTTT
T ss_pred HHHhHHHHhcCEEEECCHHHHhhhhc
Confidence 99999999999999999999999985
No 3
>d1ofda1 b.80.4.1 (A:1240-1507) Alpha subunit of glutamate synthase, C-terminal domain {Synechocystis sp. [TaxId: 1143]}
Probab=97.30 E-value=6.5e-05 Score=62.07 Aligned_cols=104 Identities=27% Similarity=0.419 Sum_probs=65.2
Q ss_dssp SEEEEEEEEECSSTTTTCBTTEEEEEEEEE------------CSCTTTTCEEEEEEEECCTTCCCCGGGSEEECSSTTTT
Q ss_pred cEEEEEecchhhhhhhhcCCCcEEEEEccc------------hhhhhhhccccceEEEcCccccccccccccccceeeee
Q d1ea0a1 61 HITIRLRGTAGQSLGAFAVQGIKLEVMGDA------------NDYVGKGLSGGTIVVRPTTSSPLETNKNTIIGNTVLYG 128 (270)
Q Consensus 61 ~I~i~~~G~aGqsfgaf~~~G~~l~~~G~a------------nD~vgk~~~gg~i~i~~~~~~~~~~~~n~i~Gn~~lYG 128 (270)
-++|.++|.|.-.+|-=+ .|=++.+.+.. -+.++-|+.||++.|......+|.-+..
T Consensus 81 G~~l~~~G~anD~vgk~~-~gg~i~v~~~~~~~~~~~~~~i~Gn~~~yGAt~G~~~~~g~ag~Rf~VRnS---------- 149 (268)
T d1ofda1 81 GMTLHLQGEANDYVGKGM-NGGEIVIVPHPQASFAPEDNVIIGNTCLYGATGGNLYANGRAGERFAVRNS---------- 149 (268)
T ss_dssp TEEEEEEEEECSCTTTTC-CSSEEEEECCTTCCSCGGGSBCSCSSTTTTCCSCEEEESSBCCSSTTTTCS----------
T ss_pred CCEEEEEeccchhhhhhc-cCceeEEEcCccccccccccccccccceeeeccceEEEcCCccceeeeecc----------
Confidence 356777777755555444 44477776552 3344456677777777766666554322
Q ss_dssp CCEEEEEESSEECTTTTTTCEEEEEEESC-BCSSTTTTCCEEEECCSSCBC
Q ss_pred eccceEEEcCCcccchhehhccceEEecc-ccccccceecCCEEEEecCCC
Q d1ea0a1 129 ATAGKLFAAGQAGERFAVRNSGATVVVEG-CGSNGCEYMTGGTAVILGRVG 178 (270)
Q Consensus 129 At~G~~~~~G~aGeRf~VRnSGa~aVveG-~Gdh~cEYMtgG~vvvLG~~G 178 (270)
|..+-|.| +|+.+|=-+.|-.+||=| +|..+|.=||||.+-|+.+-+
T Consensus 150 --Ga~aVveG-~Gd~~~EYMtgG~vvvlG~~G~nfgaGMtGG~ayvyD~~~ 197 (268)
T d1ofda1 150 --VGKAVIEG-AGDHCCEYMTGGVIVVLGPVGRNVGAGMTGGLAYFLDEVG 197 (268)
T ss_dssp --SCEEEESC-CCSSTTTTCEEEEEEECSCCCSSBTTTCCEEEEEEECSSS
T ss_pred --ccEEEEcc-ccccccccccCCEEEEEecCCcccccceecceEEEecccc
Confidence 23445555 677777777777777777 577777777777777776654
No 4
>d1ea0a1 b.80.4.1 (A:1203-1472) Alpha subunit of glutamate synthase, C-terminal domain {Azospirillum brasilense [TaxId: 192]}
Probab=94.36 E-value=0.0042 Score=50.16 Aligned_cols=68 Identities=22% Similarity=0.337 Sum_probs=28.9
Q ss_dssp TCCEEEEEESSEECTTTTTTCE------------EEEEEESC-BCSSTTTTCCEEEECCSSCBCSSBTTTCCSSEECCCC
Q ss_pred eeccceEEEcCCcccchhehhc------------cceEEecc-ccccccceecCCEEEEecCCCcchhcccccceEEEec
Q d1ea0a1 128 GATAGKLFAAGQAGERFAVRNS------------GATVVVEG-CGSNGCEYMTGGTAVILGRVGDNFAAGMTGGMAYVYD 194 (270)
Q Consensus 128 GAt~G~~~~~G~aGeRf~VRnS------------Ga~aVveG-~Gdh~cEYMtgG~vvvLG~~G~nfgAGMsGG~ayv~d 194 (270)
|+.||++.|......+|.-+.. |-.+-|.| +|+-+|==+.|-.+||=| +|..+|-=||||.+-|+.
T Consensus 97 ~~~gg~i~i~~~~~~~~~~~~n~i~Gn~~lYGAt~G~~~~~G~aGeRf~VRnSGa~aVveG-~Gdh~cEYMtgG~vvvLG 175 (270)
T d1ea0a1 97 GLSGGTIVVRPTTSSPLETNKNTIIGNTVLYGATAGKLFAAGQAGERFAVRNSGATVVVEG-CGSNGCEYMTGGTAVILG 175 (270)
T ss_dssp TCEEEEEEEECCTTCCCCGGGSEEECSSTTTTCCEEEEEESSEECTTTTTTCEEEEEEESC-BCSSTTTTCCEEEECCSS
T ss_pred hccccceEEEcCccccccccccccccceeeeeeccceEEEcCCcccchhehhccceEEecc-ccccccceecCCEEEEec
Confidence 4445555555444444332211 11222223 344444444444444444 455555555555555554
Q ss_dssp TT
Q ss_pred cc
Q d1ea0a1 195 LD 196 (270)
Q Consensus 195 ~~ 196 (270)
+-
T Consensus 176 ~~ 177 (270)
T d1ea0a1 176 RV 177 (270)
T ss_dssp CB
T ss_pred CC
Confidence 33
No 5
>d1g3pa1 b.37.1.1 (A:1-65) N-terminal domains of the minor coat protein g3p {Bacteriophage M13 [TaxId: 10870]}
Probab=35.11 E-value=1.2 Score=27.01 Aligned_cols=16 Identities=31% Similarity=0.659 Sum_probs=13.1
Q ss_dssp STTTTCCEEEECCSSC
Q ss_pred cccceecCCEEEEecC
Q d1ea0a1 161 NGCEYMTGGTAVILGR 176 (270)
Q Consensus 161 h~cEYMtgG~vvvLG~ 176 (270)
.+|+||.-|++|.-|+
T Consensus 34 eGC~y~AtGViV~~~d 49 (65)
T d1g3pa1 34 EGCLWNATGVVVCTGD 49 (65)
T ss_dssp TTEEEEEEEEEEECTT
T ss_pred cCEEEEeeeEEEecCC
Confidence 3699999999988763
No 6
>d1jv2a4 b.69.8.1 (A:1-438) Integrin alpha N-terminal domain {Human (Homo sapiens), isoform V [TaxId: 9606]}
Probab=18.45 E-value=43 Score=24.23 Aligned_cols=6 Identities=33% Similarity=0.296 Sum_probs=2.4
Q ss_dssp SEECCC
Q ss_pred ceEEEe
Q d1ea0a1 188 GMAYVY 193 (270)
Q Consensus 188 G~ayv~ 193 (270)
|.+|||
T Consensus 313 G~vyv~ 318 (438)
T d1jv2a4 313 GQVSVS 318 (438)
T ss_dssp CEEEEE
T ss_pred ceeeEe
Confidence 344443
No 7
>d1qvca_ b.40.4.3 (A:) ssDNA-binding protein {Escherichia coli [TaxId: 562]}
Probab=9.18 E-value=26 Score=21.84 Aligned_cols=32 Identities=13% Similarity=0.213 Sum_probs=27.3
Q ss_dssp TSEEEEEEEEECSSTTTTCBTTEEEEEEEEEC
Q ss_pred CcEEEEEecchhhhhhhhcCCCcEEEEEccch
Q d1ea0a1 60 GHITIRLRGTAGQSLGAFAVQGIKLEVMGDAN 91 (270)
Q Consensus 60 ~~I~i~~~G~aGqsfgaf~~~G~~l~~~G~an 91 (270)
.-+++.+.|..++-+..++.+|..+.|+|...
T Consensus 53 ~w~~v~~~g~~Ae~~~~~l~KG~~V~V~G~l~ 84 (145)
T d1qvca_ 53 EWHRVVLFGKLAEVASEYLRKGSQVYIEGQLR 84 (145)
T ss_dssp EEEEEEEETHHHHHHHHHCCTTCEEEEEEEEE
T ss_pred eeeEeeeecccchhhhhheecCcEEEEEEEEE
Confidence 34788889998999999999999999999643
No 8
>d1yfba1 b.129.1.3 (A:3-53) Transcription-state regulator AbrB, the N-terminal DNA recognition domain {Bacillus subtilis [TaxId: 1423]}
Probab=9.09 E-value=13 Score=20.52 Aligned_cols=13 Identities=31% Similarity=0.542 Sum_probs=7.9
Q ss_dssp EEEEGGGGGGCSS
Q ss_pred EEeCHHHHHhhcc
Q d1ea0a1 254 QVVPKEMLNRLEV 266 (270)
Q Consensus 254 kViPkey~~~Le~ 266 (270)
-|+|+|.++.|..
T Consensus 16 IViPkelR~~L~I 28 (51)
T d1yfba1 16 VVIPIELRRTLGI 28 (51)
T ss_dssp EECCHHHHHHTTC
T ss_pred EEeeHHHHHhcCC
Confidence 3566666666654
No 9
>d1hf2a1 b.80.3.1 (A:100-206) Cell-division inhibitor MinC, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=8.43 E-value=20 Score=22.20 Aligned_cols=27 Identities=37% Similarity=0.833 Sum_probs=11.9
Q ss_dssp TTTTCCEEEECCSSCBCSSBTTTCCSS
Q ss_pred ccceecCCEEEEecCCCcchhcccccc
Q d1ea0a1 162 GCEYMTGGTAVILGRVGDNFAAGMTGG 188 (270)
Q Consensus 162 ~cEYMtgG~vvvLG~~G~nfgAGMsGG 188 (270)
+.|-.++|.|+|+|..-=..-||..|-
T Consensus 30 GA~V~A~GnI~V~G~l~G~v~AG~~g~ 56 (107)
T d1hf2a1 30 GAEILAGGSVVVFGKAQGNIRAGLNEG 56 (107)
T ss_dssp TCEEEESSCEEEEEEECSEEEECTTTC
T ss_pred CCEEEeCCCEEEEeeecceEEECCCCC
Confidence 333344555555554443444444333
No 10
>d1v8qa_ b.84.4.1 (A:) Ribosomal protein L27 {Thermus thermophilus [TaxId: 274]}
Probab=8.15 E-value=30 Score=19.62 Aligned_cols=43 Identities=23% Similarity=0.407 Sum_probs=32.2
Q ss_dssp TTTCEEEEEEEECCTTCCCCGGGSEEEC-SSTTTTCCEEEEEESS
Q ss_pred hhhccccceEEEcCcccccccccccccc-ceeeeeeccceEEEcC
Q d1ea0a1 95 GKGLSGGTIVVRPTTSSPLETNKNTIIG-NTVLYGATAGKLFAAG 138 (270)
Q Consensus 95 gk~~~gg~i~i~~~~~~~~~~~~n~i~G-n~~lYGAt~G~~~~~G 138 (270)
|.-...|.|+|+- ....|.+-+|+-+| +..||-...|.....-
T Consensus 9 Gq~V~~G~IivRQ-RGtk~~pG~nVg~GkD~TLfAl~~G~V~F~~ 52 (66)
T d1v8qa_ 9 GQVVRAGNILVRQ-RGTRFKPGKNVGMGRDFTLFALVDGVVEFQD 52 (66)
T ss_dssp TCEECTTCEEEEC-SSCSSEECTTEEECTTCCEEESSSEEEEEEE
T ss_pred CEEEeCCcEEEEe-ccCcEeCCCCeeecCCCeEEEecceEEEEEE
Confidence 3344678888884 56788899998775 6789999999887643
No 10000
>d1v8qa_ b.84.4.1 (A:) Ribosomal protein L27 {Thermus thermophilus [TaxId: 274]}
Probab=8.15 E-value=30 Score=19.62 Aligned_cols=43 Identities=23% Similarity=0.407 Sum_probs=32.2
Q ss_dssp TTTCEEEEEEEECCTTCCCCGGGSEEEC-SSTTTTCCEEEEEESS
Q ss_pred hhhccccceEEEcCcccccccccccccc-ceeeeeeccceEEEcC
Q d1ea0a1 95 GKGLSGGTIVVRPTTSSPLETNKNTIIG-NTVLYGATAGKLFAAG 138 (270)
Q Consensus 95 gk~~~gg~i~i~~~~~~~~~~~~n~i~G-n~~lYGAt~G~~~~~G 138 (270)
|.-...|.|+|+- ....|.+-+|+-+| +..||-...|.....-
T Consensus 9 Gq~V~~G~IivRQ-RGtk~~pG~nVg~GkD~TLfAl~~G~V~F~~ 52 (66)
T d1v8qa_ 9 GQVVRAGNILVRQ-RGTRFKPGKNVGMGRDFTLFALVDGVVEFQD 52 (66)
T ss_dssp TCEECTTCEEEEC-SSCSSEECTTEEECTTCCEEESSSEEEEEEE
T ss_pred CEEEeCCcEEEEe-ccCcEeCCCCeeecCCCeEEEecceEEEEEE
Confidence 3344678888884 56788899998775 6789999999887643
Done!
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