/usr/share/doc/r-bioc-annotationdbi/README.test is in r-bioc-annotationdbi 1.36.1-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 | Notes on how this package can be tested.
────────────────────────────────────────
This package can be tested by running the provided test:
LC_ALL=C R --no-save <<EOT
require("AnnotationDbi") || stop("unable to load AnnotationDbi package")
AnnotationDbi:::.test()
EOT
in order to confirm its integrity. However, to successfully run this
testsuite you need to install several BioConductor databases. There is
some preparation to package these done at the following locations:
svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-reactome.db/trunk/
svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-hgu95av2.db/trunk/
svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-hom.hs.inp.db/trunk/
svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-org.tguttatatestingsubset.eg.db/trunk/
svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-org.at.tair.db/trunk/
svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-org.sc.sgd.db/trunk/
You might like to decide whether you want to create these packages yourself
locally or find any other means to install the relevant databases to run
the test suite. It was decided that creating Debian packages of large size
just to run the test suite is not very sensible.
-- Andreas Tille <tille@debian.org> Sun, 08 Jun 2014 17:46:30 +0200
|