This file is indexed.

/usr/lib/R/site-library/biomformat/help/AnIndex is in r-bioc-biomformat 1.2.0-1.

This file is owned by root:root, with mode 0o644.

The actual contents of the file can be viewed below.

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biom-package	biom-package
biom	biom-methods
biom,list-method	biom-methods
biom-class	biom-class
biom_data	biom_data-methods
biom_data,biom,ANY,character-method	biom_data-methods
biom_data,biom,character,ANY-method	biom_data-methods
biom_data,biom,missing,missing-method	biom_data-methods
biom_data,biom,missing,numeric-method	biom_data-methods
biom_data,biom,numeric,missing-method	biom_data-methods
biom_data,biom,numeric,numeric-method	biom_data-methods
biom_shape	biom_shape-methods
biom_shape,biom-method	biom_shape-methods
colnames,biom-method	colnames-methods
header	header-methods
header,biom-method	header-methods
make_biom	make_biom
matrix_element_type	matrix_element_type-methods
matrix_element_type,biom-method	matrix_element_type-methods
ncol,biom-method	ncol-methods
nrow,biom-method	nrow-methods
observation_metadata	observation_metadata-methods
observation_metadata,biom,character-method	observation_metadata-methods
observation_metadata,biom,missing-method	observation_metadata-methods
observation_metadata,biom,numeric-method	observation_metadata-methods
read_biom	read_biom
read_hdf5_biom	read_hdf5_biom
rownames,biom-method	rownames-methods
sample_metadata	sample_metadata-methods
sample_metadata,biom,character-method	sample_metadata-methods
sample_metadata,biom,missing-method	sample_metadata-methods
sample_metadata,biom,numeric-method	sample_metadata-methods
show,biom-method	show-methods
write_biom	write_biom