/usr/lib/R/site-library/BSgenome/INDEX is in r-bioc-bsgenome 1.42.0-2.
This file is owned by root:root, with mode 0o644.
The actual contents of the file can be viewed below.
1 2 3 4 5 6 7 8 9 10 11 12 13 14 | BSParams-class Class "BSParams"
BSgenome-class BSgenome objects
BSgenome-utils BSgenome utilities
BSgenomeForge The BSgenomeForge functions
BSgenomeViews-class BSgenomeViews objects
SNPlocs-class SNPlocs objects
XtraSNPlocs-class XtraSNPlocs objects
available.genomes Find available/installed genomes
bsapply bsapply
export-methods Export a BSgenome object as a FASTA or twoBit
file
getSeq getSeq methods for BSgenome and XStringSet
objects
injectSNPs SNP injection
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